Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03499

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03497 and MPMX19_03498 are separated by 4 nucleotidesMPMX19_03498 and MPMX19_03499 overlap by 4 nucleotidesMPMX19_03499 and MPMX19_03500 are separated by 16 nucleotidesMPMX19_03500 and MPMX19_03501 are separated by 120 nucleotides MPMX19_03497: MPMX19_03497 - Formate dehydrogenase-O major subunit, at 914,140 to 917,202 _03497 MPMX19_03498: MPMX19_03498 - Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit, at 917,207 to 918,118 _03498 MPMX19_03499: MPMX19_03499 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 918,115 to 918,774 _03499 MPMX19_03500: MPMX19_03500 - Sulfur carrier protein FdhD, at 918,791 to 919,627 _03500 MPMX19_03501: MPMX19_03501 - hypothetical protein, at 919,748 to 920,326 _03501 Position (kb) 918 919Strain fitness (log2 ratio) -2 -1 0 1at 917.158 kb on + strandat 917.158 kb on + strandat 917.158 kb on + strandat 917.159 kb on - strandat 917.159 kb on - strandat 917.201 kb on - strandat 917.393 kb on + strand, within MPMX19_03498at 917.393 kb on + strand, within MPMX19_03498at 917.394 kb on - strand, within MPMX19_03498at 917.394 kb on - strand, within MPMX19_03498at 917.558 kb on + strand, within MPMX19_03498at 917.558 kb on + strand, within MPMX19_03498at 917.558 kb on + strand, within MPMX19_03498at 917.580 kb on - strand, within MPMX19_03498at 917.590 kb on + strand, within MPMX19_03498at 917.590 kb on + strand, within MPMX19_03498at 917.591 kb on - strand, within MPMX19_03498at 917.609 kb on + strand, within MPMX19_03498at 917.610 kb on - strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.837 kb on + strand, within MPMX19_03498at 917.837 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.906 kb on + strand, within MPMX19_03498at 917.906 kb on + strand, within MPMX19_03498at 918.023 kb on + strand, within MPMX19_03498at 918.023 kb on + strand, within MPMX19_03498at 918.023 kb on + strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.178 kb on + strandat 918.179 kb on - strandat 918.259 kb on + strand, within MPMX19_03499at 918.260 kb on - strand, within MPMX19_03499at 918.260 kb on - strand, within MPMX19_03499at 918.469 kb on + strand, within MPMX19_03499at 918.469 kb on + strand, within MPMX19_03499at 918.470 kb on - strand, within MPMX19_03499at 918.655 kb on + strand, within MPMX19_03499at 918.708 kb on + strand, within MPMX19_03499at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 919.084 kb on + strand, within MPMX19_03500at 919.084 kb on + strand, within MPMX19_03500at 919.085 kb on - strand, within MPMX19_03500at 919.085 kb on - strand, within MPMX19_03500at 919.085 kb on - strand, within MPMX19_03500at 919.598 kb on + strandat 919.598 kb on + strandat 919.598 kb on + strandat 919.599 kb on - strandat 919.599 kb on - strandat 919.599 kb on - strandat 919.664 kb on + strandat 919.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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917,158 + -1.2
917,158 + -0.2
917,158 + +0.1
917,159 - -1.9
917,159 - +0.2
917,201 - -1.1
917,393 + MPMX19_03498 0.20 -0.6
917,393 + MPMX19_03498 0.20 -0.8
917,394 - MPMX19_03498 0.21 +0.7
917,394 - MPMX19_03498 0.21 -1.5
917,558 + MPMX19_03498 0.38 -0.4
917,558 + MPMX19_03498 0.38 +0.7
917,558 + MPMX19_03498 0.38 -0.0
917,580 - MPMX19_03498 0.41 +1.2
917,590 + MPMX19_03498 0.42 -1.8
917,590 + MPMX19_03498 0.42 -1.2
917,591 - MPMX19_03498 0.42 +0.0
917,609 + MPMX19_03498 0.44 -0.5
917,610 - MPMX19_03498 0.44 -0.5
917,669 + MPMX19_03498 0.51 +0.2
917,669 + MPMX19_03498 0.51 -1.3
917,669 + MPMX19_03498 0.51 +0.6
917,669 + MPMX19_03498 0.51 -0.6
917,669 + MPMX19_03498 0.51 -1.2
917,669 + MPMX19_03498 0.51 -0.6
917,670 - MPMX19_03498 0.51 -0.6
917,670 - MPMX19_03498 0.51 -0.5
917,670 - MPMX19_03498 0.51 +1.4
917,670 - MPMX19_03498 0.51 -2.6
917,670 - MPMX19_03498 0.51 -1.1
917,670 - MPMX19_03498 0.51 -0.0
917,837 + MPMX19_03498 0.69 -0.3
917,837 + MPMX19_03498 0.69 +1.5
917,873 + MPMX19_03498 0.73 -0.8
917,873 + MPMX19_03498 0.73 -0.7
917,873 + MPMX19_03498 0.73 -0.6
917,873 + MPMX19_03498 0.73 -0.8
917,873 + MPMX19_03498 0.73 -0.6
917,873 + MPMX19_03498 0.73 +0.4
917,873 + MPMX19_03498 0.73 +0.7
917,873 + MPMX19_03498 0.73 -1.5
917,873 + MPMX19_03498 0.73 -1.7
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 -1.7
917,873 + MPMX19_03498 0.73 +0.5
917,873 + MPMX19_03498 0.73 -1.8
917,873 + MPMX19_03498 0.73 -1.5
917,873 + MPMX19_03498 0.73 -0.2
917,873 + MPMX19_03498 0.73 -0.6
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 -0.6
917,873 + MPMX19_03498 0.73 +0.6
917,873 + MPMX19_03498 0.73 +1.0
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 +0.6
917,873 + MPMX19_03498 0.73 +0.2
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 -0.9
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 -2.0
917,874 - MPMX19_03498 0.73 -0.7
917,874 - MPMX19_03498 0.73 +0.6
917,874 - MPMX19_03498 0.73 -2.0
917,874 - MPMX19_03498 0.73 -1.6
917,874 - MPMX19_03498 0.73 -0.0
917,874 - MPMX19_03498 0.73 -0.7
917,874 - MPMX19_03498 0.73 +0.8
917,874 - MPMX19_03498 0.73 -0.2
917,874 - MPMX19_03498 0.73 +1.0
917,874 - MPMX19_03498 0.73 -0.2
917,874 - MPMX19_03498 0.73 -2.0
917,874 - MPMX19_03498 0.73 +1.0
917,874 - MPMX19_03498 0.73 +0.6
917,874 - MPMX19_03498 0.73 +0.1
917,874 - MPMX19_03498 0.73 -1.6
917,874 - MPMX19_03498 0.73 -1.0
917,874 - MPMX19_03498 0.73 -0.4
917,874 - MPMX19_03498 0.73 -0.8
917,874 - MPMX19_03498 0.73 -1.5
917,874 - MPMX19_03498 0.73 -1.1
917,874 - MPMX19_03498 0.73 -0.4
917,906 + MPMX19_03498 0.77 -1.3
917,906 + MPMX19_03498 0.77 +0.4
918,023 + MPMX19_03498 0.89 -1.4
918,023 + MPMX19_03498 0.89 +0.7
918,023 + MPMX19_03498 0.89 -0.1
918,024 - MPMX19_03498 0.90 -1.0
918,024 - MPMX19_03498 0.90 +0.5
918,024 - MPMX19_03498 0.90 -1.0
918,024 - MPMX19_03498 0.90 -1.4
918,024 - MPMX19_03498 0.90 -0.3
918,024 - MPMX19_03498 0.90 +0.1
918,024 - MPMX19_03498 0.90 +0.3
918,024 - MPMX19_03498 0.90 -1.1
918,178 + +0.6
918,179 - -0.0
918,259 + MPMX19_03499 0.22 -0.9
918,260 - MPMX19_03499 0.22 -1.5
918,260 - MPMX19_03499 0.22 +0.7
918,469 + MPMX19_03499 0.54 -1.6
918,469 + MPMX19_03499 0.54 -1.7
918,470 - MPMX19_03499 0.54 -0.8
918,655 + MPMX19_03499 0.82 -1.9
918,708 + MPMX19_03499 0.90 -1.6
918,932 + MPMX19_03500 0.17 +0.6
918,932 + MPMX19_03500 0.17 -2.5
918,932 + MPMX19_03500 0.17 -0.4
918,932 + MPMX19_03500 0.17 +0.1
918,932 + MPMX19_03500 0.17 -0.0
918,932 + MPMX19_03500 0.17 -0.2
918,933 - MPMX19_03500 0.17 -1.0
918,933 - MPMX19_03500 0.17 -0.4
918,933 - MPMX19_03500 0.17 -0.7
918,933 - MPMX19_03500 0.17 -2.4
918,933 - MPMX19_03500 0.17 -0.9
919,084 + MPMX19_03500 0.35 -0.0
919,084 + MPMX19_03500 0.35 -1.0
919,085 - MPMX19_03500 0.35 +0.1
919,085 - MPMX19_03500 0.35 +0.2
919,085 - MPMX19_03500 0.35 -1.9
919,598 + +0.6
919,598 + -0.6
919,598 + +0.5
919,599 - +1.2
919,599 - -0.6
919,599 - -0.5
919,664 + -0.8
919,664 + -1.1

Or see this region's nucleotide sequence