Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03480

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03479 and MPMX19_03480 are separated by 142 nucleotidesMPMX19_03480 and MPMX19_03481 are separated by 53 nucleotidesMPMX19_03481 and MPMX19_03482 are separated by 14 nucleotides MPMX19_03479: MPMX19_03479 - Bifunctional NMN adenylyltransferase/Nudix hydrolase, at 891,272 to 892,405 _03479 MPMX19_03480: MPMX19_03480 - hypothetical protein, at 892,548 to 892,889 _03480 MPMX19_03481: MPMX19_03481 - hypothetical protein, at 892,943 to 893,512 _03481 MPMX19_03482: MPMX19_03482 - Gamma-glutamylputrescine oxidoreductase, at 893,527 to 894,840 _03482 Position (kb) 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 891.735 kb on + strand, within MPMX19_03479at 891.735 kb on + strand, within MPMX19_03479at 891.735 kb on + strand, within MPMX19_03479at 891.736 kb on - strand, within MPMX19_03479at 891.747 kb on + strand, within MPMX19_03479at 891.747 kb on + strand, within MPMX19_03479at 891.747 kb on + strand, within MPMX19_03479at 891.747 kb on + strand, within MPMX19_03479at 891.747 kb on + strand, within MPMX19_03479at 891.747 kb on + strand, within MPMX19_03479at 891.747 kb on + strand, within MPMX19_03479at 891.748 kb on - strand, within MPMX19_03479at 891.774 kb on + strand, within MPMX19_03479at 891.774 kb on + strand, within MPMX19_03479at 891.774 kb on + strand, within MPMX19_03479at 891.774 kb on + strand, within MPMX19_03479at 891.870 kb on + strand, within MPMX19_03479at 891.870 kb on + strand, within MPMX19_03479at 891.870 kb on + strand, within MPMX19_03479at 891.870 kb on + strand, within MPMX19_03479at 891.870 kb on + strand, within MPMX19_03479at 891.870 kb on + strand, within MPMX19_03479at 891.871 kb on - strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.952 kb on - strand, within MPMX19_03479at 891.952 kb on - strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 892.084 kb on - strand, within MPMX19_03479at 892.084 kb on - strand, within MPMX19_03479at 892.442 kb on + strandat 892.462 kb on + strandat 892.549 kb on + strandat 892.549 kb on + strandat 892.549 kb on + strandat 892.550 kb on - strandat 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.593 kb on - strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 893.184 kb on + strand, within MPMX19_03481at 893.184 kb on + strand, within MPMX19_03481at 893.184 kb on + strand, within MPMX19_03481at 893.184 kb on + strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.236 kb on - strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.586 kb on + strandat 893.586 kb on + strandat 893.587 kb on - strandat 893.587 kb on - strandat 893.587 kb on - strandat 893.587 kb on - strandat 893.588 kb on + strandat 893.588 kb on + strandat 893.588 kb on + strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.619 kb on + strandat 893.801 kb on + strand, within MPMX19_03482at 893.802 kb on - strand, within MPMX19_03482

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
891,735 + MPMX19_03479 0.41 +3.0
891,735 + MPMX19_03479 0.41 -0.7
891,735 + MPMX19_03479 0.41 -1.5
891,736 - MPMX19_03479 0.41 -1.4
891,747 + MPMX19_03479 0.42 -0.2
891,747 + MPMX19_03479 0.42 -0.0
891,747 + MPMX19_03479 0.42 +0.9
891,747 + MPMX19_03479 0.42 -0.6
891,747 + MPMX19_03479 0.42 -0.2
891,747 + MPMX19_03479 0.42 -1.0
891,747 + MPMX19_03479 0.42 -0.7
891,748 - MPMX19_03479 0.42 +0.2
891,774 + MPMX19_03479 0.44 +0.2
891,774 + MPMX19_03479 0.44 -0.5
891,774 + MPMX19_03479 0.44 -1.5
891,774 + MPMX19_03479 0.44 +0.3
891,870 + MPMX19_03479 0.53 -0.6
891,870 + MPMX19_03479 0.53 -0.0
891,870 + MPMX19_03479 0.53 -0.8
891,870 + MPMX19_03479 0.53 -1.7
891,870 + MPMX19_03479 0.53 +0.5
891,870 + MPMX19_03479 0.53 -0.7
891,871 - MPMX19_03479 0.53 -0.8
891,951 + MPMX19_03479 0.60 +0.4
891,951 + MPMX19_03479 0.60 -0.1
891,951 + MPMX19_03479 0.60 -1.3
891,951 + MPMX19_03479 0.60 +0.4
891,951 + MPMX19_03479 0.60 -0.6
891,951 + MPMX19_03479 0.60 -1.9
891,952 - MPMX19_03479 0.60 -0.6
891,952 - MPMX19_03479 0.60 +0.4
891,954 + MPMX19_03479 0.60 -1.0
891,954 + MPMX19_03479 0.60 +0.1
891,954 + MPMX19_03479 0.60 -1.0
891,954 + MPMX19_03479 0.60 -0.7
891,954 + MPMX19_03479 0.60 +0.1
891,955 - MPMX19_03479 0.60 -0.5
891,955 - MPMX19_03479 0.60 -0.2
891,955 - MPMX19_03479 0.60 +0.4
891,955 - MPMX19_03479 0.60 +1.3
891,955 - MPMX19_03479 0.60 -1.0
891,955 - MPMX19_03479 0.60 +0.4
891,955 - MPMX19_03479 0.60 -1.4
891,955 - MPMX19_03479 0.60 +1.2
891,955 - MPMX19_03479 0.60 -0.7
891,955 - MPMX19_03479 0.60 +1.2
892,084 - MPMX19_03479 0.72 -0.6
892,084 - MPMX19_03479 0.72 +0.4
892,442 + -2.8
892,462 + -0.0
892,549 + -0.7
892,549 + -0.2
892,549 + -1.4
892,550 - -1.7
892,591 + MPMX19_03480 0.13 -1.0
892,591 + MPMX19_03480 0.13 -2.3
892,591 + MPMX19_03480 0.13 -1.5
892,591 + MPMX19_03480 0.13 -0.6
892,591 + MPMX19_03480 0.13 -0.4
892,591 + MPMX19_03480 0.13 -0.0
892,592 - MPMX19_03480 0.13 -1.9
892,592 - MPMX19_03480 0.13 +0.3
892,592 - MPMX19_03480 0.13 -0.4
892,592 - MPMX19_03480 0.13 -0.5
892,592 - MPMX19_03480 0.13 +0.4
892,592 - MPMX19_03480 0.13 +1.0
892,592 - MPMX19_03480 0.13 -1.6
892,593 - MPMX19_03480 0.13 -1.2
892,846 + MPMX19_03480 0.87 -1.2
892,846 + MPMX19_03480 0.87 -0.3
892,846 + MPMX19_03480 0.87 -0.8
892,846 + MPMX19_03480 0.87 +0.3
892,846 + MPMX19_03480 0.87 -0.0
892,847 - MPMX19_03480 0.87 -0.6
892,847 - MPMX19_03480 0.87 -1.2
892,847 - MPMX19_03480 0.87 +1.2
892,847 - MPMX19_03480 0.87 -1.4
892,847 - MPMX19_03480 0.87 -0.7
892,847 - MPMX19_03480 0.87 -0.5
892,847 - MPMX19_03480 0.87 +0.7
893,184 + MPMX19_03481 0.42 +0.4
893,184 + MPMX19_03481 0.42 -0.4
893,184 + MPMX19_03481 0.42 +0.1
893,184 + MPMX19_03481 0.42 -0.9
893,185 - MPMX19_03481 0.42 +0.2
893,185 - MPMX19_03481 0.42 -0.8
893,185 - MPMX19_03481 0.42 -0.1
893,185 - MPMX19_03481 0.42 +1.0
893,185 - MPMX19_03481 0.42 -0.4
893,185 - MPMX19_03481 0.42 -0.4
893,185 - MPMX19_03481 0.42 -1.8
893,185 - MPMX19_03481 0.42 +0.9
893,235 + MPMX19_03481 0.51 -1.4
893,235 + MPMX19_03481 0.51 -0.4
893,235 + MPMX19_03481 0.51 -1.0
893,235 + MPMX19_03481 0.51 -0.6
893,235 + MPMX19_03481 0.51 -0.4
893,235 + MPMX19_03481 0.51 -2.0
893,236 - MPMX19_03481 0.51 -0.9
893,280 + MPMX19_03481 0.59 +0.8
893,280 + MPMX19_03481 0.59 -0.8
893,280 + MPMX19_03481 0.59 +0.4
893,280 + MPMX19_03481 0.59 +0.2
893,281 - MPMX19_03481 0.59 -2.4
893,281 - MPMX19_03481 0.59 +0.0
893,281 - MPMX19_03481 0.59 +0.4
893,281 - MPMX19_03481 0.59 -0.0
893,313 + MPMX19_03481 0.65 +1.0
893,313 + MPMX19_03481 0.65 +0.4
893,313 + MPMX19_03481 0.65 -1.5
893,313 + MPMX19_03481 0.65 -0.8
893,313 + MPMX19_03481 0.65 -1.4
893,313 + MPMX19_03481 0.65 -0.8
893,313 + MPMX19_03481 0.65 +0.6
893,586 + -1.0
893,586 + -0.3
893,587 - -1.1
893,587 - -1.4
893,587 - -1.8
893,587 - +2.0
893,588 + -0.1
893,588 + +1.2
893,588 + -1.4
893,589 - -1.2
893,589 - -0.8
893,589 - +0.1
893,589 - +0.6
893,589 - +0.4
893,589 - -1.2
893,589 - +0.4
893,589 - +1.0
893,589 - -0.8
893,619 + -0.3
893,801 + MPMX19_03482 0.21 -0.4
893,802 - MPMX19_03482 0.21 +2.0

Or see this region's nucleotide sequence