Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03475

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03473 and MPMX19_03474 are separated by 19 nucleotidesMPMX19_03474 and MPMX19_03475 are separated by 4 nucleotidesMPMX19_03475 and MPMX19_03476 are separated by 12 nucleotidesMPMX19_03476 and MPMX19_03477 are separated by 17 nucleotides MPMX19_03473: MPMX19_03473 - hypothetical protein, at 885,093 to 885,506 _03473 MPMX19_03474: MPMX19_03474 - hypothetical protein, at 885,526 to 886,110 _03474 MPMX19_03475: MPMX19_03475 - Putative acid--amine ligase YgiC, at 886,115 to 887,323 _03475 MPMX19_03476: MPMX19_03476 - hypothetical protein, at 887,336 to 888,100 _03476 MPMX19_03477: MPMX19_03477 - Nicotinate phosphoribosyltransferase, at 888,118 to 889,434 _03477 Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1 2at 885.132 kb on + strandat 885.132 kb on + strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.438 kb on + strand, within MPMX19_03473at 885.439 kb on - strand, within MPMX19_03473at 885.486 kb on + strandat 885.486 kb on + strandat 885.486 kb on + strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.501 kb on + strandat 885.501 kb on + strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.623 kb on - strand, within MPMX19_03474at 885.623 kb on - strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.878 kb on - strand, within MPMX19_03474at 885.878 kb on - strand, within MPMX19_03474at 885.895 kb on + strand, within MPMX19_03474at 885.896 kb on - strand, within MPMX19_03474at 885.896 kb on - strand, within MPMX19_03474at 886.000 kb on + strand, within MPMX19_03474at 886.000 kb on + strand, within MPMX19_03474at 886.000 kb on + strand, within MPMX19_03474at 886.001 kb on - strand, within MPMX19_03474at 886.001 kb on - strand, within MPMX19_03474at 886.003 kb on + strand, within MPMX19_03474at 886.208 kb on + strandat 886.208 kb on + strandat 886.209 kb on - strandat 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.331 kb on + strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.499 kb on + strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.694 kb on + strand, within MPMX19_03475at 886.695 kb on - strand, within MPMX19_03475at 886.695 kb on - strand, within MPMX19_03475at 886.761 kb on - strand, within MPMX19_03475at 886.826 kb on + strand, within MPMX19_03475at 886.826 kb on + strand, within MPMX19_03475at 887.029 kb on + strand, within MPMX19_03475at 887.029 kb on + strand, within MPMX19_03475at 887.029 kb on + strand, within MPMX19_03475at 887.030 kb on - strand, within MPMX19_03475at 887.030 kb on - strand, within MPMX19_03475at 887.142 kb on - strand, within MPMX19_03475at 887.163 kb on - strand, within MPMX19_03475at 887.163 kb on - strand, within MPMX19_03475at 887.394 kb on + strandat 887.395 kb on - strandat 887.395 kb on - strandat 887.395 kb on - strandat 887.481 kb on + strand, within MPMX19_03476at 887.481 kb on + strand, within MPMX19_03476at 887.482 kb on - strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.850 kb on + strand, within MPMX19_03476at 888.170 kb on + strandat 888.210 kb on - strandat 888.210 kb on - strandat 888.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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885,132 + -0.4
885,132 + +0.5
885,133 - -1.9
885,133 - -0.2
885,133 - +2.2
885,186 + MPMX19_03473 0.22 +0.1
885,186 + MPMX19_03473 0.22 -0.8
885,186 + MPMX19_03473 0.22 +0.4
885,187 - MPMX19_03473 0.23 +1.5
885,187 - MPMX19_03473 0.23 +0.7
885,187 - MPMX19_03473 0.23 -0.8
885,187 - MPMX19_03473 0.23 +1.6
885,187 - MPMX19_03473 0.23 -0.8
885,372 + MPMX19_03473 0.67 -0.8
885,372 + MPMX19_03473 0.67 -0.4
885,372 + MPMX19_03473 0.67 -1.0
885,372 + MPMX19_03473 0.67 -0.0
885,372 + MPMX19_03473 0.67 +0.3
885,372 + MPMX19_03473 0.67 +0.2
885,372 + MPMX19_03473 0.67 -0.7
885,373 - MPMX19_03473 0.68 +1.0
885,373 - MPMX19_03473 0.68 -0.8
885,373 - MPMX19_03473 0.68 -0.4
885,373 - MPMX19_03473 0.68 -0.2
885,373 - MPMX19_03473 0.68 +1.6
885,373 - MPMX19_03473 0.68 -2.0
885,373 - MPMX19_03473 0.68 +0.7
885,438 + MPMX19_03473 0.83 -0.4
885,439 - MPMX19_03473 0.84 -0.0
885,486 + +0.1
885,486 + -0.5
885,486 + -0.8
885,487 - -0.0
885,487 - -0.8
885,487 - -0.2
885,487 - -1.5
885,501 + -0.1
885,501 + -1.0
885,502 - -1.2
885,502 - -0.1
885,502 - +0.2
885,502 - +0.4
885,502 - -1.8
885,502 - -1.6
885,502 - +0.1
885,502 - -1.2
885,502 - -0.8
885,623 - MPMX19_03474 0.17 -1.4
885,623 - MPMX19_03474 0.17 -1.2
885,877 + MPMX19_03474 0.60 +0.2
885,877 + MPMX19_03474 0.60 +0.4
885,877 + MPMX19_03474 0.60 +0.2
885,877 + MPMX19_03474 0.60 -1.7
885,877 + MPMX19_03474 0.60 -1.6
885,878 - MPMX19_03474 0.60 -1.4
885,878 - MPMX19_03474 0.60 -1.6
885,895 + MPMX19_03474 0.63 -0.4
885,896 - MPMX19_03474 0.63 +0.1
885,896 - MPMX19_03474 0.63 +1.2
886,000 + MPMX19_03474 0.81 -0.7
886,000 + MPMX19_03474 0.81 -0.7
886,000 + MPMX19_03474 0.81 -0.0
886,001 - MPMX19_03474 0.81 -2.0
886,001 - MPMX19_03474 0.81 -0.4
886,003 + MPMX19_03474 0.82 -0.6
886,208 + -0.8
886,208 + -0.3
886,209 - -0.4
886,284 - MPMX19_03475 0.14 -1.9
886,284 - MPMX19_03475 0.14 +0.6
886,284 - MPMX19_03475 0.14 +0.6
886,284 - MPMX19_03475 0.14 -0.6
886,284 - MPMX19_03475 0.14 -1.3
886,331 + MPMX19_03475 0.18 -1.3
886,332 - MPMX19_03475 0.18 +0.1
886,332 - MPMX19_03475 0.18 -0.6
886,332 - MPMX19_03475 0.18 -1.2
886,332 - MPMX19_03475 0.18 +0.3
886,332 - MPMX19_03475 0.18 -1.8
886,415 + MPMX19_03475 0.25 +0.6
886,415 + MPMX19_03475 0.25 -0.4
886,415 + MPMX19_03475 0.25 -0.4
886,415 + MPMX19_03475 0.25 +1.0
886,416 - MPMX19_03475 0.25 -0.5
886,416 - MPMX19_03475 0.25 -0.0
886,416 - MPMX19_03475 0.25 -1.4
886,416 - MPMX19_03475 0.25 -0.9
886,416 - MPMX19_03475 0.25 -1.0
886,499 + MPMX19_03475 0.32 -0.4
886,500 - MPMX19_03475 0.32 -1.9
886,500 - MPMX19_03475 0.32 -1.2
886,500 - MPMX19_03475 0.32 -0.0
886,694 + MPMX19_03475 0.48 -0.5
886,695 - MPMX19_03475 0.48 -0.5
886,695 - MPMX19_03475 0.48 +1.0
886,761 - MPMX19_03475 0.53 -0.4
886,826 + MPMX19_03475 0.59 -1.3
886,826 + MPMX19_03475 0.59 -2.0
887,029 + MPMX19_03475 0.76 -0.6
887,029 + MPMX19_03475 0.76 +0.7
887,029 + MPMX19_03475 0.76 -1.9
887,030 - MPMX19_03475 0.76 -0.3
887,030 - MPMX19_03475 0.76 -0.4
887,142 - MPMX19_03475 0.85 -0.1
887,163 - MPMX19_03475 0.87 -2.0
887,163 - MPMX19_03475 0.87 -0.6
887,394 + +1.2
887,395 - -1.7
887,395 - -1.8
887,395 - -0.0
887,481 + MPMX19_03476 0.19 +1.4
887,481 + MPMX19_03476 0.19 +0.1
887,482 - MPMX19_03476 0.19 -1.2
887,502 + MPMX19_03476 0.22 -0.4
887,502 + MPMX19_03476 0.22 +1.7
887,502 + MPMX19_03476 0.22 +1.2
887,502 + MPMX19_03476 0.22 -0.3
887,502 + MPMX19_03476 0.22 -1.0
887,502 + MPMX19_03476 0.22 -0.8
887,503 - MPMX19_03476 0.22 -1.9
887,503 - MPMX19_03476 0.22 -1.4
887,503 - MPMX19_03476 0.22 +0.2
887,850 + MPMX19_03476 0.67 +0.6
888,170 + -0.8
888,210 - -1.2
888,210 - -1.3
888,210 - -1.2

Or see this region's nucleotide sequence