Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03473

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03471 and MPMX19_03472 overlap by 4 nucleotidesMPMX19_03472 and MPMX19_03473 are separated by 217 nucleotidesMPMX19_03473 and MPMX19_03474 are separated by 19 nucleotidesMPMX19_03474 and MPMX19_03475 are separated by 4 nucleotides MPMX19_03471: MPMX19_03471 - Bifunctional protein Aas, at 880,857 to 884,270 _03471 MPMX19_03472: MPMX19_03472 - Fatty acid metabolism regulator protein, at 884,267 to 884,875 _03472 MPMX19_03473: MPMX19_03473 - hypothetical protein, at 885,093 to 885,506 _03473 MPMX19_03474: MPMX19_03474 - hypothetical protein, at 885,526 to 886,110 _03474 MPMX19_03475: MPMX19_03475 - Putative acid--amine ligase YgiC, at 886,115 to 887,323 _03475 Position (kb) 885 886Strain fitness (log2 ratio) -2 -1 0 1 2at 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.156 kb on - strandat 884.156 kb on - strandat 884.394 kb on + strand, within MPMX19_03472at 884.395 kb on - strand, within MPMX19_03472at 884.395 kb on - strand, within MPMX19_03472at 884.470 kb on + strand, within MPMX19_03472at 884.471 kb on - strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.698 kb on - strand, within MPMX19_03472at 884.944 kb on - strandat 884.944 kb on - strandat 884.944 kb on - strandat 884.944 kb on - strandat 884.948 kb on - strandat 884.948 kb on - strandat 884.948 kb on - strandat 884.949 kb on + strandat 884.981 kb on + strandat 884.981 kb on + strandat 884.982 kb on - strandat 884.982 kb on - strandat 884.982 kb on - strandat 884.984 kb on - strandat 884.984 kb on - strandat 884.991 kb on - strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.132 kb on + strandat 885.132 kb on + strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.438 kb on + strand, within MPMX19_03473at 885.439 kb on - strand, within MPMX19_03473at 885.486 kb on + strandat 885.486 kb on + strandat 885.486 kb on + strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.501 kb on + strandat 885.501 kb on + strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.623 kb on - strand, within MPMX19_03474at 885.623 kb on - strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.877 kb on + strand, within MPMX19_03474at 885.878 kb on - strand, within MPMX19_03474at 885.878 kb on - strand, within MPMX19_03474at 885.895 kb on + strand, within MPMX19_03474at 885.896 kb on - strand, within MPMX19_03474at 885.896 kb on - strand, within MPMX19_03474at 886.000 kb on + strand, within MPMX19_03474at 886.000 kb on + strand, within MPMX19_03474at 886.000 kb on + strand, within MPMX19_03474at 886.001 kb on - strand, within MPMX19_03474at 886.001 kb on - strand, within MPMX19_03474at 886.003 kb on + strand, within MPMX19_03474at 886.208 kb on + strandat 886.208 kb on + strandat 886.209 kb on - strandat 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.284 kb on - strand, within MPMX19_03475at 886.331 kb on + strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.332 kb on - strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.499 kb on + strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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884,155 + -0.9
884,155 + +0.3
884,155 + -0.4
884,155 + +0.8
884,155 + -0.3
884,155 + -0.8
884,155 + +0.6
884,155 + -1.9
884,155 + -1.9
884,156 - -2.1
884,156 - -1.9
884,394 + MPMX19_03472 0.21 -0.6
884,395 - MPMX19_03472 0.21 -0.6
884,395 - MPMX19_03472 0.21 +0.4
884,470 + MPMX19_03472 0.33 +0.1
884,471 - MPMX19_03472 0.33 -0.8
884,697 + MPMX19_03472 0.71 +1.0
884,697 + MPMX19_03472 0.71 -0.1
884,697 + MPMX19_03472 0.71 -0.4
884,698 - MPMX19_03472 0.71 -0.6
884,944 - +0.7
884,944 - +0.4
884,944 - -0.6
884,944 - +0.4
884,948 - -0.7
884,948 - -0.5
884,948 - +0.6
884,949 + +1.0
884,981 + -0.6
884,981 + -2.1
884,982 - +1.1
884,982 - -0.4
884,982 - +1.2
884,984 - -0.8
884,984 - -1.5
884,991 - -0.5
885,092 + -0.9
885,092 + -1.0
885,092 + -0.0
885,092 + -1.6
885,092 + +0.2
885,092 + +0.2
885,092 + -0.6
885,093 - +0.4
885,093 - +0.1
885,093 - -1.0
885,093 - -1.6
885,132 + -0.4
885,132 + +0.5
885,133 - -1.9
885,133 - -0.2
885,133 - +2.2
885,186 + MPMX19_03473 0.22 +0.1
885,186 + MPMX19_03473 0.22 -0.8
885,186 + MPMX19_03473 0.22 +0.4
885,187 - MPMX19_03473 0.23 +1.5
885,187 - MPMX19_03473 0.23 +0.7
885,187 - MPMX19_03473 0.23 -0.8
885,187 - MPMX19_03473 0.23 +1.6
885,187 - MPMX19_03473 0.23 -0.8
885,372 + MPMX19_03473 0.67 -0.8
885,372 + MPMX19_03473 0.67 -0.4
885,372 + MPMX19_03473 0.67 -1.0
885,372 + MPMX19_03473 0.67 -0.0
885,372 + MPMX19_03473 0.67 +0.3
885,372 + MPMX19_03473 0.67 +0.2
885,372 + MPMX19_03473 0.67 -0.7
885,373 - MPMX19_03473 0.68 +1.0
885,373 - MPMX19_03473 0.68 -0.8
885,373 - MPMX19_03473 0.68 -0.4
885,373 - MPMX19_03473 0.68 -0.2
885,373 - MPMX19_03473 0.68 +1.6
885,373 - MPMX19_03473 0.68 -2.0
885,373 - MPMX19_03473 0.68 +0.7
885,438 + MPMX19_03473 0.83 -0.4
885,439 - MPMX19_03473 0.84 -0.0
885,486 + +0.1
885,486 + -0.5
885,486 + -0.8
885,487 - -0.0
885,487 - -0.8
885,487 - -0.2
885,487 - -1.5
885,501 + -0.1
885,501 + -1.0
885,502 - -1.2
885,502 - -0.1
885,502 - +0.2
885,502 - +0.4
885,502 - -1.8
885,502 - -1.6
885,502 - +0.1
885,502 - -1.2
885,502 - -0.8
885,623 - MPMX19_03474 0.17 -1.4
885,623 - MPMX19_03474 0.17 -1.2
885,877 + MPMX19_03474 0.60 +0.2
885,877 + MPMX19_03474 0.60 +0.4
885,877 + MPMX19_03474 0.60 +0.2
885,877 + MPMX19_03474 0.60 -1.7
885,877 + MPMX19_03474 0.60 -1.6
885,878 - MPMX19_03474 0.60 -1.4
885,878 - MPMX19_03474 0.60 -1.6
885,895 + MPMX19_03474 0.63 -0.4
885,896 - MPMX19_03474 0.63 +0.1
885,896 - MPMX19_03474 0.63 +1.2
886,000 + MPMX19_03474 0.81 -0.7
886,000 + MPMX19_03474 0.81 -0.7
886,000 + MPMX19_03474 0.81 -0.0
886,001 - MPMX19_03474 0.81 -2.0
886,001 - MPMX19_03474 0.81 -0.4
886,003 + MPMX19_03474 0.82 -0.6
886,208 + -0.8
886,208 + -0.3
886,209 - -0.4
886,284 - MPMX19_03475 0.14 -1.9
886,284 - MPMX19_03475 0.14 +0.6
886,284 - MPMX19_03475 0.14 +0.6
886,284 - MPMX19_03475 0.14 -0.6
886,284 - MPMX19_03475 0.14 -1.3
886,331 + MPMX19_03475 0.18 -1.3
886,332 - MPMX19_03475 0.18 +0.1
886,332 - MPMX19_03475 0.18 -0.6
886,332 - MPMX19_03475 0.18 -1.2
886,332 - MPMX19_03475 0.18 +0.3
886,332 - MPMX19_03475 0.18 -1.8
886,415 + MPMX19_03475 0.25 +0.6
886,415 + MPMX19_03475 0.25 -0.4
886,415 + MPMX19_03475 0.25 -0.4
886,415 + MPMX19_03475 0.25 +1.0
886,416 - MPMX19_03475 0.25 -0.5
886,416 - MPMX19_03475 0.25 -0.0
886,416 - MPMX19_03475 0.25 -1.4
886,416 - MPMX19_03475 0.25 -0.9
886,416 - MPMX19_03475 0.25 -1.0
886,499 + MPMX19_03475 0.32 -0.4
886,500 - MPMX19_03475 0.32 -1.9
886,500 - MPMX19_03475 0.32 -1.2
886,500 - MPMX19_03475 0.32 -0.0

Or see this region's nucleotide sequence