Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03469 and MPMX19_03470 overlap by 4 nucleotides MPMX19_03470 and MPMX19_03471 overlap by 4 nucleotides MPMX19_03471 and MPMX19_03472 overlap by 4 nucleotides MPMX19_03472 and MPMX19_03473 are separated by 217 nucleotides
MPMX19_03469: MPMX19_03469 - hypothetical protein, at 879,509 to 880,183
_03469
MPMX19_03470: MPMX19_03470 - Phosphatidylinositol phosphate synthase, at 880,180 to 880,860
_03470
MPMX19_03471: MPMX19_03471 - Bifunctional protein Aas, at 880,857 to 884,270
_03471
MPMX19_03472: MPMX19_03472 - Fatty acid metabolism regulator protein, at 884,267 to 884,875
_03472
MPMX19_03473: MPMX19_03473 - hypothetical protein, at 885,093 to 885,506
_03473
Position (kb)
880
881
882
883
884
885 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 879.969 kb on + strand, within MPMX19_03469 at 879.969 kb on + strand, within MPMX19_03469 at 879.970 kb on - strand, within MPMX19_03469 at 879.970 kb on - strand, within MPMX19_03469 at 880.068 kb on + strand, within MPMX19_03469 at 880.068 kb on + strand, within MPMX19_03469 at 880.068 kb on + strand, within MPMX19_03469 at 880.068 kb on + strand, within MPMX19_03469 at 880.068 kb on + strand, within MPMX19_03469 at 880.068 kb on + strand, within MPMX19_03469 at 880.069 kb on - strand, within MPMX19_03469 at 880.069 kb on - strand, within MPMX19_03469 at 880.069 kb on - strand, within MPMX19_03469 at 880.069 kb on - strand, within MPMX19_03469 at 880.069 kb on - strand, within MPMX19_03469 at 880.310 kb on + strand, within MPMX19_03470 at 880.310 kb on + strand, within MPMX19_03470 at 880.310 kb on + strand, within MPMX19_03470 at 880.311 kb on - strand, within MPMX19_03470 at 880.445 kb on + strand, within MPMX19_03470 at 880.445 kb on + strand, within MPMX19_03470 at 880.445 kb on + strand, within MPMX19_03470 at 880.446 kb on - strand, within MPMX19_03470 at 880.505 kb on + strand, within MPMX19_03470 at 880.559 kb on + strand, within MPMX19_03470 at 880.559 kb on + strand, within MPMX19_03470 at 880.560 kb on - strand, within MPMX19_03470 at 881.496 kb on - strand, within MPMX19_03471 at 881.497 kb on + strand, within MPMX19_03471 at 881.497 kb on + strand, within MPMX19_03471 at 881.497 kb on + strand, within MPMX19_03471 at 881.497 kb on + strand, within MPMX19_03471 at 881.497 kb on + strand, within MPMX19_03471 at 881.498 kb on - strand, within MPMX19_03471 at 881.560 kb on + strand, within MPMX19_03471 at 881.561 kb on - strand, within MPMX19_03471 at 881.566 kb on + strand, within MPMX19_03471 at 881.566 kb on + strand, within MPMX19_03471 at 881.567 kb on - strand, within MPMX19_03471 at 881.567 kb on - strand, within MPMX19_03471 at 881.638 kb on + strand, within MPMX19_03471 at 881.638 kb on + strand, within MPMX19_03471 at 882.298 kb on + strand, within MPMX19_03471 at 882.299 kb on - strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.132 kb on + strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.133 kb on - strand, within MPMX19_03471 at 883.150 kb on + strand, within MPMX19_03471 at 883.150 kb on + strand, within MPMX19_03471 at 883.150 kb on + strand, within MPMX19_03471 at 883.150 kb on + strand, within MPMX19_03471 at 883.150 kb on + strand, within MPMX19_03471 at 883.150 kb on + strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.151 kb on - strand, within MPMX19_03471 at 883.210 kb on + strand, within MPMX19_03471 at 883.210 kb on + strand, within MPMX19_03471 at 883.211 kb on - strand, within MPMX19_03471 at 883.211 kb on - strand, within MPMX19_03471 at 883.438 kb on + strand, within MPMX19_03471 at 883.438 kb on + strand, within MPMX19_03471 at 883.438 kb on + strand, within MPMX19_03471 at 883.438 kb on + strand, within MPMX19_03471 at 883.438 kb on + strand, within MPMX19_03471 at 883.438 kb on + strand, within MPMX19_03471 at 883.439 kb on - strand, within MPMX19_03471 at 883.439 kb on - strand, within MPMX19_03471 at 883.439 kb on - strand, within MPMX19_03471 at 883.439 kb on - strand, within MPMX19_03471 at 883.885 kb on + strand, within MPMX19_03471 at 883.885 kb on + strand, within MPMX19_03471 at 883.885 kb on + strand, within MPMX19_03471 at 883.885 kb on + strand, within MPMX19_03471 at 883.885 kb on + strand, within MPMX19_03471 at 883.885 kb on + strand, within MPMX19_03471 at 884.155 kb on + strand at 884.155 kb on + strand at 884.155 kb on + strand at 884.155 kb on + strand at 884.155 kb on + strand at 884.155 kb on + strand at 884.155 kb on + strand at 884.155 kb on + strand at 884.155 kb on + strand at 884.156 kb on - strand at 884.156 kb on - strand at 884.394 kb on + strand, within MPMX19_03472 at 884.395 kb on - strand, within MPMX19_03472 at 884.395 kb on - strand, within MPMX19_03472 at 884.470 kb on + strand, within MPMX19_03472 at 884.471 kb on - strand, within MPMX19_03472 at 884.697 kb on + strand, within MPMX19_03472 at 884.697 kb on + strand, within MPMX19_03472 at 884.697 kb on + strand, within MPMX19_03472 at 884.698 kb on - strand, within MPMX19_03472 at 884.944 kb on - strand at 884.944 kb on - strand at 884.944 kb on - strand at 884.944 kb on - strand at 884.948 kb on - strand at 884.948 kb on - strand at 884.948 kb on - strand at 884.949 kb on + strand at 884.981 kb on + strand at 884.981 kb on + strand at 884.982 kb on - strand at 884.982 kb on - strand at 884.982 kb on - strand at 884.984 kb on - strand at 884.984 kb on - strand at 884.991 kb on - strand at 885.092 kb on + strand at 885.092 kb on + strand at 885.092 kb on + strand at 885.092 kb on + strand at 885.092 kb on + strand at 885.092 kb on + strand at 885.092 kb on + strand at 885.093 kb on - strand at 885.093 kb on - strand at 885.093 kb on - strand at 885.093 kb on - strand at 885.132 kb on + strand at 885.132 kb on + strand at 885.133 kb on - strand at 885.133 kb on - strand at 885.133 kb on - strand at 885.186 kb on + strand, within MPMX19_03473 at 885.186 kb on + strand, within MPMX19_03473 at 885.186 kb on + strand, within MPMX19_03473 at 885.187 kb on - strand, within MPMX19_03473 at 885.187 kb on - strand, within MPMX19_03473 at 885.187 kb on - strand, within MPMX19_03473 at 885.187 kb on - strand, within MPMX19_03473 at 885.187 kb on - strand, within MPMX19_03473
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 879,969 + MPMX19_03469 0.68 -0.6 879,969 + MPMX19_03469 0.68 -0.0 879,970 - MPMX19_03469 0.68 -0.9 879,970 - MPMX19_03469 0.68 -1.3 880,068 + MPMX19_03469 0.83 -0.5 880,068 + MPMX19_03469 0.83 -1.8 880,068 + MPMX19_03469 0.83 -0.4 880,068 + MPMX19_03469 0.83 +0.2 880,068 + MPMX19_03469 0.83 -1.2 880,068 + MPMX19_03469 0.83 +0.4 880,069 - MPMX19_03469 0.83 -0.6 880,069 - MPMX19_03469 0.83 -0.4 880,069 - MPMX19_03469 0.83 -1.4 880,069 - MPMX19_03469 0.83 -1.2 880,069 - MPMX19_03469 0.83 +0.2 880,310 + MPMX19_03470 0.19 +0.4 880,310 + MPMX19_03470 0.19 -0.4 880,310 + MPMX19_03470 0.19 +0.2 880,311 - MPMX19_03470 0.19 -1.0 880,445 + MPMX19_03470 0.39 +0.4 880,445 + MPMX19_03470 0.39 -1.4 880,445 + MPMX19_03470 0.39 +1.0 880,446 - MPMX19_03470 0.39 -0.6 880,505 + MPMX19_03470 0.48 -0.2 880,559 + MPMX19_03470 0.56 +0.9 880,559 + MPMX19_03470 0.56 -1.3 880,560 - MPMX19_03470 0.56 -0.8 881,496 - MPMX19_03471 0.19 -1.2 881,497 + MPMX19_03471 0.19 +0.2 881,497 + MPMX19_03471 0.19 -2.1 881,497 + MPMX19_03471 0.19 -0.8 881,497 + MPMX19_03471 0.19 -0.2 881,497 + MPMX19_03471 0.19 +0.2 881,498 - MPMX19_03471 0.19 -2.0 881,560 + MPMX19_03471 0.21 -0.1 881,561 - MPMX19_03471 0.21 -0.5 881,566 + MPMX19_03471 0.21 -1.0 881,566 + MPMX19_03471 0.21 -2.2 881,567 - MPMX19_03471 0.21 -1.2 881,567 - MPMX19_03471 0.21 -0.6 881,638 + MPMX19_03471 0.23 +2.0 881,638 + MPMX19_03471 0.23 -1.6 882,298 + MPMX19_03471 0.42 -0.1 882,299 - MPMX19_03471 0.42 -1.3 883,132 + MPMX19_03471 0.67 -1.0 883,132 + MPMX19_03471 0.67 +0.9 883,132 + MPMX19_03471 0.67 -1.7 883,132 + MPMX19_03471 0.67 +0.6 883,132 + MPMX19_03471 0.67 +0.6 883,132 + MPMX19_03471 0.67 -0.5 883,132 + MPMX19_03471 0.67 -0.1 883,132 + MPMX19_03471 0.67 -2.1 883,132 + MPMX19_03471 0.67 -0.3 883,133 - MPMX19_03471 0.67 -0.6 883,133 - MPMX19_03471 0.67 -0.8 883,133 - MPMX19_03471 0.67 -0.4 883,133 - MPMX19_03471 0.67 -0.3 883,133 - MPMX19_03471 0.67 -0.4 883,133 - MPMX19_03471 0.67 -1.1 883,133 - MPMX19_03471 0.67 -1.3 883,133 - MPMX19_03471 0.67 -0.5 883,150 + MPMX19_03471 0.67 +0.7 883,150 + MPMX19_03471 0.67 -0.0 883,150 + MPMX19_03471 0.67 -0.1 883,150 + MPMX19_03471 0.67 +0.7 883,150 + MPMX19_03471 0.67 -0.6 883,150 + MPMX19_03471 0.67 -1.2 883,151 - MPMX19_03471 0.67 -1.0 883,151 - MPMX19_03471 0.67 -0.2 883,151 - MPMX19_03471 0.67 -0.6 883,151 - MPMX19_03471 0.67 -1.8 883,151 - MPMX19_03471 0.67 -0.0 883,151 - MPMX19_03471 0.67 +0.4 883,151 - MPMX19_03471 0.67 -1.0 883,151 - MPMX19_03471 0.67 -1.7 883,151 - MPMX19_03471 0.67 -0.4 883,151 - MPMX19_03471 0.67 -0.7 883,151 - MPMX19_03471 0.67 +1.6 883,151 - MPMX19_03471 0.67 +0.4 883,210 + MPMX19_03471 0.69 +0.7 883,210 + MPMX19_03471 0.69 -0.5 883,211 - MPMX19_03471 0.69 -0.3 883,211 - MPMX19_03471 0.69 -2.1 883,438 + MPMX19_03471 0.76 -1.2 883,438 + MPMX19_03471 0.76 -2.2 883,438 + MPMX19_03471 0.76 -0.0 883,438 + MPMX19_03471 0.76 -1.6 883,438 + MPMX19_03471 0.76 -0.7 883,438 + MPMX19_03471 0.76 -1.9 883,439 - MPMX19_03471 0.76 +0.0 883,439 - MPMX19_03471 0.76 +1.1 883,439 - MPMX19_03471 0.76 -1.3 883,439 - MPMX19_03471 0.76 -0.8 883,885 + MPMX19_03471 0.89 -0.0 883,885 + MPMX19_03471 0.89 -0.6 883,885 + MPMX19_03471 0.89 +1.0 883,885 + MPMX19_03471 0.89 -1.6 883,885 + MPMX19_03471 0.89 +0.2 883,885 + MPMX19_03471 0.89 +0.1 884,155 + -0.9 884,155 + +0.3 884,155 + -0.4 884,155 + +0.8 884,155 + -0.3 884,155 + -0.8 884,155 + +0.6 884,155 + -1.9 884,155 + -1.9 884,156 - -2.1 884,156 - -1.9 884,394 + MPMX19_03472 0.21 -0.6 884,395 - MPMX19_03472 0.21 -0.6 884,395 - MPMX19_03472 0.21 +0.4 884,470 + MPMX19_03472 0.33 +0.1 884,471 - MPMX19_03472 0.33 -0.8 884,697 + MPMX19_03472 0.71 +1.0 884,697 + MPMX19_03472 0.71 -0.1 884,697 + MPMX19_03472 0.71 -0.4 884,698 - MPMX19_03472 0.71 -0.6 884,944 - +0.7 884,944 - +0.4 884,944 - -0.6 884,944 - +0.4 884,948 - -0.7 884,948 - -0.5 884,948 - +0.6 884,949 + +1.0 884,981 + -0.6 884,981 + -2.1 884,982 - +1.1 884,982 - -0.4 884,982 - +1.2 884,984 - -0.8 884,984 - -1.5 884,991 - -0.5 885,092 + -0.9 885,092 + -1.0 885,092 + -0.0 885,092 + -1.6 885,092 + +0.2 885,092 + +0.2 885,092 + -0.6 885,093 - +0.4 885,093 - +0.1 885,093 - -1.0 885,093 - -1.6 885,132 + -0.4 885,132 + +0.5 885,133 - -1.9 885,133 - -0.2 885,133 - +2.2 885,186 + MPMX19_03473 0.22 +0.1 885,186 + MPMX19_03473 0.22 -0.8 885,186 + MPMX19_03473 0.22 +0.4 885,187 - MPMX19_03473 0.23 +1.5 885,187 - MPMX19_03473 0.23 +0.7 885,187 - MPMX19_03473 0.23 -0.8 885,187 - MPMX19_03473 0.23 +1.6 885,187 - MPMX19_03473 0.23 -0.8
Or see this region's nucleotide sequence