Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03460

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03459 and MPMX19_03460 are separated by 196 nucleotidesMPMX19_03460 and MPMX19_03461 overlap by 4 nucleotides MPMX19_03459: MPMX19_03459 - hypothetical protein, at 856,557 to 868,442 _03459 MPMX19_03460: MPMX19_03460 - Signal transduction histidine-protein kinase AtoS, at 868,639 to 870,501 _03460 MPMX19_03461: MPMX19_03461 - Regulatory protein AtoC, at 870,498 to 871,919 _03461 Position (kb) 868 869 870 871Strain fitness (log2 ratio) -2 -1 0 1 2at 868.002 kb on + strandat 868.002 kb on + strandat 868.002 kb on + strandat 868.002 kb on + strandat 868.002 kb on + strandat 868.002 kb on + strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.003 kb on - strandat 868.332 kb on + strandat 868.332 kb on + strandat 868.332 kb on + strandat 868.398 kb on + strandat 868.398 kb on + strandat 868.398 kb on + strandat 868.399 kb on - strandat 868.399 kb on - strandat 868.399 kb on - strandat 868.399 kb on - strandat 868.399 kb on - strandat 868.521 kb on - strandat 868.545 kb on + strandat 868.612 kb on + strandat 868.612 kb on + strandat 868.613 kb on - strandat 868.613 kb on - strandat 868.744 kb on + strandat 868.744 kb on + strandat 868.744 kb on + strandat 868.984 kb on + strand, within MPMX19_03460at 868.984 kb on + strand, within MPMX19_03460at 868.988 kb on - strand, within MPMX19_03460at 868.988 kb on - strand, within MPMX19_03460at 868.988 kb on - strand, within MPMX19_03460at 868.988 kb on - strand, within MPMX19_03460at 869.017 kb on + strand, within MPMX19_03460at 869.017 kb on + strand, within MPMX19_03460at 869.017 kb on + strand, within MPMX19_03460at 869.017 kb on + strand, within MPMX19_03460at 869.017 kb on + strand, within MPMX19_03460at 869.018 kb on - strand, within MPMX19_03460at 869.018 kb on - strand, within MPMX19_03460at 869.018 kb on - strand, within MPMX19_03460at 869.018 kb on - strand, within MPMX19_03460at 869.018 kb on - strand, within MPMX19_03460at 869.018 kb on - strand, within MPMX19_03460at 869.018 kb on - strand, within MPMX19_03460at 869.035 kb on + strand, within MPMX19_03460at 869.036 kb on - strand, within MPMX19_03460at 869.036 kb on - strand, within MPMX19_03460at 869.188 kb on + strand, within MPMX19_03460at 869.188 kb on + strand, within MPMX19_03460at 869.188 kb on + strand, within MPMX19_03460at 869.189 kb on - strand, within MPMX19_03460at 869.189 kb on - strand, within MPMX19_03460at 869.190 kb on + strand, within MPMX19_03460at 869.190 kb on + strand, within MPMX19_03460at 869.190 kb on + strand, within MPMX19_03460at 869.190 kb on + strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.191 kb on - strand, within MPMX19_03460at 869.276 kb on + strand, within MPMX19_03460at 869.276 kb on + strand, within MPMX19_03460at 869.276 kb on + strand, within MPMX19_03460at 869.277 kb on - strand, within MPMX19_03460at 869.277 kb on - strand, within MPMX19_03460at 869.277 kb on - strand, within MPMX19_03460at 869.277 kb on - strand, within MPMX19_03460at 869.596 kb on + strand, within MPMX19_03460at 869.596 kb on + strand, within MPMX19_03460at 869.596 kb on + strand, within MPMX19_03460at 869.596 kb on + strand, within MPMX19_03460at 869.597 kb on - strand, within MPMX19_03460at 869.597 kb on - strand, within MPMX19_03460at 869.956 kb on + strand, within MPMX19_03460at 869.956 kb on + strand, within MPMX19_03460at 869.956 kb on + strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 870.778 kb on - strand, within MPMX19_03461at 870.778 kb on - strand, within MPMX19_03461at 870.778 kb on - strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.943 kb on - strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.353 kb on - strand, within MPMX19_03461at 871.431 kb on + strand, within MPMX19_03461at 871.432 kb on - strand, within MPMX19_03461at 871.432 kb on - strand, within MPMX19_03461

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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868,002 + +0.0
868,002 + -1.4
868,002 + +1.1
868,002 + +1.1
868,002 + -0.8
868,002 + -0.1
868,003 - -1.7
868,003 - +0.5
868,003 - -1.4
868,003 - -0.8
868,003 - -0.5
868,003 - -0.7
868,003 - -0.0
868,003 - -1.7
868,003 - +0.3
868,332 + -1.4
868,332 + -0.1
868,332 + +0.1
868,398 + -1.1
868,398 + -0.4
868,398 + -1.7
868,399 - -0.0
868,399 - -1.1
868,399 - -0.6
868,399 - -0.9
868,399 - -0.5
868,521 - -1.4
868,545 + -1.2
868,612 + +0.2
868,612 + -0.0
868,613 - -1.3
868,613 - -0.1
868,744 + +0.6
868,744 + +0.4
868,744 + -2.6
868,984 + MPMX19_03460 0.19 -0.6
868,984 + MPMX19_03460 0.19 -0.4
868,988 - MPMX19_03460 0.19 -0.8
868,988 - MPMX19_03460 0.19 -0.0
868,988 - MPMX19_03460 0.19 -0.4
868,988 - MPMX19_03460 0.19 -1.5
869,017 + MPMX19_03460 0.20 +0.4
869,017 + MPMX19_03460 0.20 +0.1
869,017 + MPMX19_03460 0.20 +1.0
869,017 + MPMX19_03460 0.20 -0.4
869,017 + MPMX19_03460 0.20 -0.6
869,018 - MPMX19_03460 0.20 -0.0
869,018 - MPMX19_03460 0.20 -0.0
869,018 - MPMX19_03460 0.20 +0.1
869,018 - MPMX19_03460 0.20 +1.0
869,018 - MPMX19_03460 0.20 -0.4
869,018 - MPMX19_03460 0.20 -0.0
869,018 - MPMX19_03460 0.20 -0.8
869,035 + MPMX19_03460 0.21 +0.3
869,036 - MPMX19_03460 0.21 -1.1
869,036 - MPMX19_03460 0.21 -0.5
869,188 + MPMX19_03460 0.29 +0.3
869,188 + MPMX19_03460 0.29 -0.4
869,188 + MPMX19_03460 0.29 +0.4
869,189 - MPMX19_03460 0.30 -1.4
869,189 - MPMX19_03460 0.30 -0.7
869,190 + MPMX19_03460 0.30 -0.0
869,190 + MPMX19_03460 0.30 +1.0
869,190 + MPMX19_03460 0.30 +1.4
869,190 + MPMX19_03460 0.30 +0.1
869,191 - MPMX19_03460 0.30 -2.7
869,191 - MPMX19_03460 0.30 +0.6
869,191 - MPMX19_03460 0.30 -1.0
869,191 - MPMX19_03460 0.30 -0.4
869,191 - MPMX19_03460 0.30 -1.6
869,191 - MPMX19_03460 0.30 -0.4
869,191 - MPMX19_03460 0.30 -0.8
869,191 - MPMX19_03460 0.30 -0.5
869,191 - MPMX19_03460 0.30 -0.8
869,191 - MPMX19_03460 0.30 -0.4
869,191 - MPMX19_03460 0.30 -1.1
869,276 + MPMX19_03460 0.34 -0.0
869,276 + MPMX19_03460 0.34 +0.4
869,276 + MPMX19_03460 0.34 -1.9
869,277 - MPMX19_03460 0.34 -1.4
869,277 - MPMX19_03460 0.34 -0.4
869,277 - MPMX19_03460 0.34 -0.4
869,277 - MPMX19_03460 0.34 -1.6
869,596 + MPMX19_03460 0.51 -1.6
869,596 + MPMX19_03460 0.51 -0.5
869,596 + MPMX19_03460 0.51 +0.2
869,596 + MPMX19_03460 0.51 -0.2
869,597 - MPMX19_03460 0.51 +0.2
869,597 - MPMX19_03460 0.51 -0.8
869,956 + MPMX19_03460 0.71 -1.2
869,956 + MPMX19_03460 0.71 +0.6
869,956 + MPMX19_03460 0.71 +1.0
869,957 - MPMX19_03460 0.71 +2.0
869,957 - MPMX19_03460 0.71 -1.3
869,957 - MPMX19_03460 0.71 -0.1
869,957 - MPMX19_03460 0.71 -1.4
870,778 - MPMX19_03461 0.20 -1.2
870,778 - MPMX19_03461 0.20 -0.8
870,778 - MPMX19_03461 0.20 -0.8
870,828 + MPMX19_03461 0.23 -0.0
870,828 + MPMX19_03461 0.23 -0.0
870,828 + MPMX19_03461 0.23 -0.8
870,828 + MPMX19_03461 0.23 +0.4
870,829 - MPMX19_03461 0.23 -0.2
870,829 - MPMX19_03461 0.23 +0.1
870,829 - MPMX19_03461 0.23 -0.4
870,829 - MPMX19_03461 0.23 +0.4
870,829 - MPMX19_03461 0.23 -0.9
870,829 - MPMX19_03461 0.23 -0.7
870,829 - MPMX19_03461 0.23 -1.4
870,943 - MPMX19_03461 0.31 -0.3
871,086 + MPMX19_03461 0.41 -1.0
871,086 + MPMX19_03461 0.41 +0.5
871,086 + MPMX19_03461 0.41 -0.2
871,086 + MPMX19_03461 0.41 -0.6
871,086 + MPMX19_03461 0.41 -0.2
871,086 + MPMX19_03461 0.41 -1.3
871,086 + MPMX19_03461 0.41 -2.1
871,086 + MPMX19_03461 0.41 +0.4
871,087 - MPMX19_03461 0.41 -0.6
871,087 - MPMX19_03461 0.41 +1.2
871,087 - MPMX19_03461 0.41 +0.3
871,087 - MPMX19_03461 0.41 -2.4
871,087 - MPMX19_03461 0.41 -1.0
871,087 - MPMX19_03461 0.41 -0.0
871,353 - MPMX19_03461 0.60 -0.4
871,431 + MPMX19_03461 0.66 -1.0
871,432 - MPMX19_03461 0.66 -0.7
871,432 - MPMX19_03461 0.66 -1.0

Or see this region's nucleotide sequence