Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03455

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03454 and MPMX19_03455 are separated by 205 nucleotidesMPMX19_03455 and MPMX19_03456 are separated by 264 nucleotidesMPMX19_03456 and MPMX19_03457 are separated by 11 nucleotides MPMX19_03454: MPMX19_03454 - Nitrate import ATP-binding protein NrtC, at 851,116 to 851,949 _03454 MPMX19_03455: MPMX19_03455 - HTH-type transcriptional repressor NagR, at 852,155 to 852,874 _03455 MPMX19_03456: MPMX19_03456 - hypothetical protein, at 853,139 to 853,303 _03456 MPMX19_03457: MPMX19_03457 - hypothetical protein, at 853,315 to 855,117 _03457 Position (kb) 852 853Strain fitness (log2 ratio) -2 -1 0 1at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.652 kb on - strand, within MPMX19_03454at 851.652 kb on - strand, within MPMX19_03454at 851.652 kb on - strand, within MPMX19_03454at 851.843 kb on + strand, within MPMX19_03454at 851.843 kb on + strand, within MPMX19_03454at 851.843 kb on + strand, within MPMX19_03454at 851.844 kb on - strand, within MPMX19_03454at 852.189 kb on - strandat 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.872 kb on + strandat 852.872 kb on + strandat 852.872 kb on + strandat 853.301 kb on + strandat 853.302 kb on - strandat 853.302 kb on - strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.324 kb on - strandat 853.324 kb on - strandat 853.324 kb on - strandat 853.324 kb on - strandat 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.728 kb on + strand, within MPMX19_03457at 853.728 kb on + strand, within MPMX19_03457at 853.859 kb on + strand, within MPMX19_03457at 853.860 kb on - strand, within MPMX19_03457

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
851,651 + MPMX19_03454 0.64 -1.0
851,651 + MPMX19_03454 0.64 -0.4
851,651 + MPMX19_03454 0.64 -0.6
851,651 + MPMX19_03454 0.64 -0.5
851,651 + MPMX19_03454 0.64 -1.0
851,651 + MPMX19_03454 0.64 -1.7
851,652 - MPMX19_03454 0.64 -0.5
851,652 - MPMX19_03454 0.64 +0.2
851,652 - MPMX19_03454 0.64 -2.2
851,843 + MPMX19_03454 0.87 -0.0
851,843 + MPMX19_03454 0.87 -0.2
851,843 + MPMX19_03454 0.87 -0.6
851,844 - MPMX19_03454 0.87 +1.2
852,189 - -0.5
852,642 - MPMX19_03455 0.68 -0.8
852,642 - MPMX19_03455 0.68 -1.2
852,642 - MPMX19_03455 0.68 -0.4
852,642 - MPMX19_03455 0.68 -1.8
852,872 + -0.6
852,872 + -1.0
852,872 + -0.4
853,301 + -0.7
853,302 - -1.0
853,302 - -0.0
853,323 + -0.5
853,323 + -1.2
853,323 + -0.4
853,323 + -0.2
853,323 + -1.2
853,323 + -1.7
853,323 + -2.2
853,324 - -0.4
853,324 - -0.5
853,324 - -0.6
853,324 - +1.7
853,655 + MPMX19_03457 0.19 -0.8
853,655 + MPMX19_03457 0.19 -1.8
853,655 + MPMX19_03457 0.19 -1.9
853,655 + MPMX19_03457 0.19 -1.2
853,655 + MPMX19_03457 0.19 -0.0
853,655 + MPMX19_03457 0.19 -0.0
853,655 + MPMX19_03457 0.19 -0.3
853,655 + MPMX19_03457 0.19 -1.6
853,655 + MPMX19_03457 0.19 -1.6
853,655 + MPMX19_03457 0.19 +0.3
853,655 + MPMX19_03457 0.19 -1.6
853,656 - MPMX19_03457 0.19 -0.2
853,656 - MPMX19_03457 0.19 -0.3
853,656 - MPMX19_03457 0.19 -0.4
853,656 - MPMX19_03457 0.19 -2.0
853,728 + MPMX19_03457 0.23 -1.7
853,728 + MPMX19_03457 0.23 -0.4
853,859 + MPMX19_03457 0.30 +0.3
853,860 - MPMX19_03457 0.30 -2.4

Or see this region's nucleotide sequence