Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03419 and MPMX19_03420 are separated by 1 nucleotides MPMX19_03420 and MPMX19_03421 are separated by 142 nucleotides MPMX19_03421 and MPMX19_03422 are separated by 47 nucleotides
MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534
_03419
MPMX19_03420: MPMX19_03420 - hypothetical protein, at 812,536 to 813,021
_03420
MPMX19_03421: MPMX19_03421 - hypothetical protein, at 813,164 to 813,673
_03421
MPMX19_03422: MPMX19_03422 - hypothetical protein, at 813,721 to 815,190
_03422
Position (kb)
812
813
814 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 811.555 kb on + strand, within MPMX19_03419 at 811.741 kb on + strand, within MPMX19_03419 at 811.742 kb on - strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.772 kb on - strand, within MPMX19_03419 at 811.790 kb on - strand, within MPMX19_03419 at 811.790 kb on - strand, within MPMX19_03419 at 811.790 kb on - strand, within MPMX19_03419 at 811.790 kb on - strand, within MPMX19_03419 at 811.903 kb on + strand, within MPMX19_03419 at 811.904 kb on - strand, within MPMX19_03419 at 811.904 kb on - strand, within MPMX19_03419 at 811.904 kb on - strand, within MPMX19_03419 at 812.077 kb on + strand, within MPMX19_03419 at 812.137 kb on + strand, within MPMX19_03419 at 812.138 kb on - strand, within MPMX19_03419 at 812.138 kb on - strand, within MPMX19_03419 at 812.138 kb on - strand, within MPMX19_03419 at 812.138 kb on - strand, within MPMX19_03419 at 812.138 kb on - strand, within MPMX19_03419 at 812.453 kb on - strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.506 kb on + strand at 812.506 kb on + strand at 812.506 kb on + strand at 812.507 kb on - strand at 812.507 kb on - strand at 812.807 kb on + strand, within MPMX19_03420 at 812.807 kb on + strand, within MPMX19_03420 at 812.807 kb on + strand, within MPMX19_03420 at 812.808 kb on - strand, within MPMX19_03420 at 812.808 kb on - strand, within MPMX19_03420 at 813.243 kb on + strand, within MPMX19_03421 at 813.243 kb on + strand, within MPMX19_03421 at 813.244 kb on - strand, within MPMX19_03421 at 813.244 kb on - strand, within MPMX19_03421 at 813.252 kb on + strand, within MPMX19_03421 at 813.252 kb on + strand, within MPMX19_03421 at 813.253 kb on - strand, within MPMX19_03421 at 813.253 kb on - strand, within MPMX19_03421 at 813.687 kb on + strand at 813.815 kb on + strand at 813.842 kb on + strand at 813.842 kb on + strand at 813.842 kb on + strand at 813.842 kb on + strand at 813.843 kb on - strand at 813.843 kb on - strand at 813.843 kb on - strand at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.941 kb on + strand, within MPMX19_03422 at 813.942 kb on - strand, within MPMX19_03422 at 813.942 kb on - strand, within MPMX19_03422 at 814.004 kb on + strand, within MPMX19_03422 at 814.004 kb on + strand, within MPMX19_03422 at 814.004 kb on + strand, within MPMX19_03422 at 814.005 kb on - strand, within MPMX19_03422 at 814.005 kb on - strand, within MPMX19_03422 at 814.005 kb on - strand, within MPMX19_03422
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 811,555 + MPMX19_03419 0.45 -0.4 811,741 + MPMX19_03419 0.56 +0.2 811,742 - MPMX19_03419 0.56 -0.2 811,771 + MPMX19_03419 0.57 -0.4 811,771 + MPMX19_03419 0.57 -1.0 811,771 + MPMX19_03419 0.57 -0.9 811,771 + MPMX19_03419 0.57 -0.4 811,772 - MPMX19_03419 0.58 -0.2 811,790 - MPMX19_03419 0.59 -0.0 811,790 - MPMX19_03419 0.59 -1.4 811,790 - MPMX19_03419 0.59 +0.1 811,790 - MPMX19_03419 0.59 -1.4 811,903 + MPMX19_03419 0.65 +0.1 811,904 - MPMX19_03419 0.65 -1.4 811,904 - MPMX19_03419 0.65 -0.1 811,904 - MPMX19_03419 0.65 +0.5 812,077 + MPMX19_03419 0.75 +0.0 812,137 + MPMX19_03419 0.78 -0.5 812,138 - MPMX19_03419 0.78 -1.0 812,138 - MPMX19_03419 0.78 -0.6 812,138 - MPMX19_03419 0.78 +0.3 812,138 - MPMX19_03419 0.78 -1.7 812,138 - MPMX19_03419 0.78 -0.0 812,453 - -0.9 812,488 + -1.6 812,488 + -0.3 812,488 + +0.5 812,488 + -2.0 812,488 + +0.5 812,488 + +0.1 812,489 - +0.4 812,489 - -0.4 812,489 - -0.5 812,489 - -1.7 812,489 - -0.6 812,489 - +0.6 812,489 - -0.5 812,489 - +1.0 812,506 + +0.8 812,506 + -0.4 812,506 + +1.0 812,507 - +0.1 812,507 - -0.7 812,807 + MPMX19_03420 0.56 -1.6 812,807 + MPMX19_03420 0.56 -1.2 812,807 + MPMX19_03420 0.56 +0.2 812,808 - MPMX19_03420 0.56 -0.4 812,808 - MPMX19_03420 0.56 -0.6 813,243 + MPMX19_03421 0.15 -1.1 813,243 + MPMX19_03421 0.15 -0.6 813,244 - MPMX19_03421 0.16 -1.5 813,244 - MPMX19_03421 0.16 -0.0 813,252 + MPMX19_03421 0.17 -0.0 813,252 + MPMX19_03421 0.17 -2.2 813,253 - MPMX19_03421 0.17 -0.4 813,253 - MPMX19_03421 0.17 +0.5 813,687 + -0.4 813,815 + -0.9 813,842 + +0.5 813,842 + +0.6 813,842 + -1.0 813,842 + -0.2 813,843 - -0.4 813,843 - +1.5 813,843 - +0.2 813,917 + MPMX19_03422 0.13 -0.5 813,917 + MPMX19_03422 0.13 -0.6 813,917 + MPMX19_03422 0.13 -0.0 813,917 + MPMX19_03422 0.13 -1.5 813,917 + MPMX19_03422 0.13 -1.2 813,917 + MPMX19_03422 0.13 -1.1 813,917 + MPMX19_03422 0.13 +0.2 813,917 + MPMX19_03422 0.13 +3.0 813,917 + MPMX19_03422 0.13 +0.2 813,917 + MPMX19_03422 0.13 -0.0 813,917 + MPMX19_03422 0.13 -0.6 813,917 + MPMX19_03422 0.13 -1.7 813,917 + MPMX19_03422 0.13 -0.1 813,918 - MPMX19_03422 0.13 +0.1 813,918 - MPMX19_03422 0.13 -0.7 813,918 - MPMX19_03422 0.13 -0.3 813,918 - MPMX19_03422 0.13 +0.1 813,918 - MPMX19_03422 0.13 +0.5 813,918 - MPMX19_03422 0.13 -1.2 813,918 - MPMX19_03422 0.13 -0.3 813,918 - MPMX19_03422 0.13 +0.1 813,918 - MPMX19_03422 0.13 -0.1 813,918 - MPMX19_03422 0.13 +0.6 813,918 - MPMX19_03422 0.13 -1.9 813,918 - MPMX19_03422 0.13 -0.4 813,941 + MPMX19_03422 0.15 -0.9 813,942 - MPMX19_03422 0.15 -1.5 813,942 - MPMX19_03422 0.15 -0.0 814,004 + MPMX19_03422 0.19 -0.8 814,004 + MPMX19_03422 0.19 +0.2 814,004 + MPMX19_03422 0.19 -2.1 814,005 - MPMX19_03422 0.19 +0.4 814,005 - MPMX19_03422 0.19 +0.1 814,005 - MPMX19_03422 0.19 -1.0
Or see this region's nucleotide sequence