Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03420

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03419 and MPMX19_03420 are separated by 1 nucleotidesMPMX19_03420 and MPMX19_03421 are separated by 142 nucleotidesMPMX19_03421 and MPMX19_03422 are separated by 47 nucleotides MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534 _03419 MPMX19_03420: MPMX19_03420 - hypothetical protein, at 812,536 to 813,021 _03420 MPMX19_03421: MPMX19_03421 - hypothetical protein, at 813,164 to 813,673 _03421 MPMX19_03422: MPMX19_03422 - hypothetical protein, at 813,721 to 815,190 _03422 Position (kb) 812 813 814Strain fitness (log2 ratio) -2 -1 0 1 2 3at 811.555 kb on + strand, within MPMX19_03419at 811.741 kb on + strand, within MPMX19_03419at 811.742 kb on - strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.772 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.903 kb on + strand, within MPMX19_03419at 811.904 kb on - strand, within MPMX19_03419at 811.904 kb on - strand, within MPMX19_03419at 811.904 kb on - strand, within MPMX19_03419at 812.077 kb on + strand, within MPMX19_03419at 812.137 kb on + strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.453 kb on - strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.506 kb on + strandat 812.506 kb on + strandat 812.506 kb on + strandat 812.507 kb on - strandat 812.507 kb on - strandat 812.807 kb on + strand, within MPMX19_03420at 812.807 kb on + strand, within MPMX19_03420at 812.807 kb on + strand, within MPMX19_03420at 812.808 kb on - strand, within MPMX19_03420at 812.808 kb on - strand, within MPMX19_03420at 813.243 kb on + strand, within MPMX19_03421at 813.243 kb on + strand, within MPMX19_03421at 813.244 kb on - strand, within MPMX19_03421at 813.244 kb on - strand, within MPMX19_03421at 813.252 kb on + strand, within MPMX19_03421at 813.252 kb on + strand, within MPMX19_03421at 813.253 kb on - strand, within MPMX19_03421at 813.253 kb on - strand, within MPMX19_03421at 813.687 kb on + strandat 813.815 kb on + strandat 813.842 kb on + strandat 813.842 kb on + strandat 813.842 kb on + strandat 813.842 kb on + strandat 813.843 kb on - strandat 813.843 kb on - strandat 813.843 kb on - strandat 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.941 kb on + strand, within MPMX19_03422at 813.942 kb on - strand, within MPMX19_03422at 813.942 kb on - strand, within MPMX19_03422at 814.004 kb on + strand, within MPMX19_03422at 814.004 kb on + strand, within MPMX19_03422at 814.004 kb on + strand, within MPMX19_03422at 814.005 kb on - strand, within MPMX19_03422at 814.005 kb on - strand, within MPMX19_03422at 814.005 kb on - strand, within MPMX19_03422

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
811,555 + MPMX19_03419 0.45 -0.4
811,741 + MPMX19_03419 0.56 +0.2
811,742 - MPMX19_03419 0.56 -0.2
811,771 + MPMX19_03419 0.57 -0.4
811,771 + MPMX19_03419 0.57 -1.0
811,771 + MPMX19_03419 0.57 -0.9
811,771 + MPMX19_03419 0.57 -0.4
811,772 - MPMX19_03419 0.58 -0.2
811,790 - MPMX19_03419 0.59 -0.0
811,790 - MPMX19_03419 0.59 -1.4
811,790 - MPMX19_03419 0.59 +0.1
811,790 - MPMX19_03419 0.59 -1.4
811,903 + MPMX19_03419 0.65 +0.1
811,904 - MPMX19_03419 0.65 -1.4
811,904 - MPMX19_03419 0.65 -0.1
811,904 - MPMX19_03419 0.65 +0.5
812,077 + MPMX19_03419 0.75 +0.0
812,137 + MPMX19_03419 0.78 -0.5
812,138 - MPMX19_03419 0.78 -1.0
812,138 - MPMX19_03419 0.78 -0.6
812,138 - MPMX19_03419 0.78 +0.3
812,138 - MPMX19_03419 0.78 -1.7
812,138 - MPMX19_03419 0.78 -0.0
812,453 - -0.9
812,488 + -1.6
812,488 + -0.3
812,488 + +0.5
812,488 + -2.0
812,488 + +0.5
812,488 + +0.1
812,489 - +0.4
812,489 - -0.4
812,489 - -0.5
812,489 - -1.7
812,489 - -0.6
812,489 - +0.6
812,489 - -0.5
812,489 - +1.0
812,506 + +0.8
812,506 + -0.4
812,506 + +1.0
812,507 - +0.1
812,507 - -0.7
812,807 + MPMX19_03420 0.56 -1.6
812,807 + MPMX19_03420 0.56 -1.2
812,807 + MPMX19_03420 0.56 +0.2
812,808 - MPMX19_03420 0.56 -0.4
812,808 - MPMX19_03420 0.56 -0.6
813,243 + MPMX19_03421 0.15 -1.1
813,243 + MPMX19_03421 0.15 -0.6
813,244 - MPMX19_03421 0.16 -1.5
813,244 - MPMX19_03421 0.16 -0.0
813,252 + MPMX19_03421 0.17 -0.0
813,252 + MPMX19_03421 0.17 -2.2
813,253 - MPMX19_03421 0.17 -0.4
813,253 - MPMX19_03421 0.17 +0.5
813,687 + -0.4
813,815 + -0.9
813,842 + +0.5
813,842 + +0.6
813,842 + -1.0
813,842 + -0.2
813,843 - -0.4
813,843 - +1.5
813,843 - +0.2
813,917 + MPMX19_03422 0.13 -0.5
813,917 + MPMX19_03422 0.13 -0.6
813,917 + MPMX19_03422 0.13 -0.0
813,917 + MPMX19_03422 0.13 -1.5
813,917 + MPMX19_03422 0.13 -1.2
813,917 + MPMX19_03422 0.13 -1.1
813,917 + MPMX19_03422 0.13 +0.2
813,917 + MPMX19_03422 0.13 +3.0
813,917 + MPMX19_03422 0.13 +0.2
813,917 + MPMX19_03422 0.13 -0.0
813,917 + MPMX19_03422 0.13 -0.6
813,917 + MPMX19_03422 0.13 -1.7
813,917 + MPMX19_03422 0.13 -0.1
813,918 - MPMX19_03422 0.13 +0.1
813,918 - MPMX19_03422 0.13 -0.7
813,918 - MPMX19_03422 0.13 -0.3
813,918 - MPMX19_03422 0.13 +0.1
813,918 - MPMX19_03422 0.13 +0.5
813,918 - MPMX19_03422 0.13 -1.2
813,918 - MPMX19_03422 0.13 -0.3
813,918 - MPMX19_03422 0.13 +0.1
813,918 - MPMX19_03422 0.13 -0.1
813,918 - MPMX19_03422 0.13 +0.6
813,918 - MPMX19_03422 0.13 -1.9
813,918 - MPMX19_03422 0.13 -0.4
813,941 + MPMX19_03422 0.15 -0.9
813,942 - MPMX19_03422 0.15 -1.5
813,942 - MPMX19_03422 0.15 -0.0
814,004 + MPMX19_03422 0.19 -0.8
814,004 + MPMX19_03422 0.19 +0.2
814,004 + MPMX19_03422 0.19 -2.1
814,005 - MPMX19_03422 0.19 +0.4
814,005 - MPMX19_03422 0.19 +0.1
814,005 - MPMX19_03422 0.19 -1.0

Or see this region's nucleotide sequence