Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03419

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03418 and MPMX19_03419 overlap by 37 nucleotidesMPMX19_03419 and MPMX19_03420 are separated by 1 nucleotidesMPMX19_03420 and MPMX19_03421 are separated by 142 nucleotides MPMX19_03417: MPMX19_03417 - Protein ClpV1, at 807,089 to 809,740 _03417 MPMX19_03418: MPMX19_03418 - hypothetical protein, at 809,737 to 810,774 _03418 MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534 _03419 MPMX19_03420: MPMX19_03420 - hypothetical protein, at 812,536 to 813,021 _03420 MPMX19_03421: MPMX19_03421 - hypothetical protein, at 813,164 to 813,673 _03421 Position (kb) 810 811 812 813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 810.017 kb on + strand, within MPMX19_03418at 810.017 kb on + strand, within MPMX19_03418at 810.018 kb on - strand, within MPMX19_03418at 810.387 kb on - strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.841 kb on + strandat 810.841 kb on + strandat 810.841 kb on + strandat 810.842 kb on - strandat 810.842 kb on - strandat 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.346 kb on - strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.555 kb on + strand, within MPMX19_03419at 811.741 kb on + strand, within MPMX19_03419at 811.742 kb on - strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.772 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.790 kb on - strand, within MPMX19_03419at 811.903 kb on + strand, within MPMX19_03419at 811.904 kb on - strand, within MPMX19_03419at 811.904 kb on - strand, within MPMX19_03419at 811.904 kb on - strand, within MPMX19_03419at 812.077 kb on + strand, within MPMX19_03419at 812.137 kb on + strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.138 kb on - strand, within MPMX19_03419at 812.453 kb on - strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.506 kb on + strandat 812.506 kb on + strandat 812.506 kb on + strandat 812.507 kb on - strandat 812.507 kb on - strandat 812.807 kb on + strand, within MPMX19_03420at 812.807 kb on + strand, within MPMX19_03420at 812.807 kb on + strand, within MPMX19_03420at 812.808 kb on - strand, within MPMX19_03420at 812.808 kb on - strand, within MPMX19_03420at 813.243 kb on + strand, within MPMX19_03421at 813.243 kb on + strand, within MPMX19_03421at 813.244 kb on - strand, within MPMX19_03421at 813.244 kb on - strand, within MPMX19_03421at 813.252 kb on + strand, within MPMX19_03421at 813.252 kb on + strand, within MPMX19_03421at 813.253 kb on - strand, within MPMX19_03421at 813.253 kb on - strand, within MPMX19_03421

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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810,017 + MPMX19_03418 0.27 -1.8
810,017 + MPMX19_03418 0.27 +2.4
810,018 - MPMX19_03418 0.27 -2.9
810,387 - MPMX19_03418 0.63 -0.4
810,422 + MPMX19_03418 0.66 +0.4
810,422 + MPMX19_03418 0.66 -0.7
810,422 + MPMX19_03418 0.66 -1.1
810,422 + MPMX19_03418 0.66 -1.8
810,422 + MPMX19_03418 0.66 -0.3
810,423 - MPMX19_03418 0.66 -0.6
810,423 - MPMX19_03418 0.66 -0.4
810,423 - MPMX19_03418 0.66 +0.2
810,423 - MPMX19_03418 0.66 -1.7
810,423 - MPMX19_03418 0.66 +0.6
810,423 - MPMX19_03418 0.66 -1.2
810,423 - MPMX19_03418 0.66 -1.0
810,423 - MPMX19_03418 0.66 -0.0
810,485 + MPMX19_03418 0.72 -0.9
810,485 + MPMX19_03418 0.72 -1.1
810,485 + MPMX19_03418 0.72 +0.1
810,485 + MPMX19_03418 0.72 +0.0
810,485 + MPMX19_03418 0.72 -0.2
810,485 + MPMX19_03418 0.72 +0.3
810,486 - MPMX19_03418 0.72 -0.4
810,486 - MPMX19_03418 0.72 -0.6
810,486 - MPMX19_03418 0.72 -0.9
810,486 - MPMX19_03418 0.72 +1.2
810,486 - MPMX19_03418 0.72 -0.0
810,486 - MPMX19_03418 0.72 +0.1
810,486 - MPMX19_03418 0.72 -0.2
810,841 + -1.6
810,841 + +1.0
810,841 + +0.1
810,842 - +0.5
810,842 - -1.5
811,045 + MPMX19_03419 0.17 +0.4
811,045 + MPMX19_03419 0.17 -1.6
811,045 + MPMX19_03419 0.17 +0.2
811,045 + MPMX19_03419 0.17 -0.0
811,045 + MPMX19_03419 0.17 +0.5
811,046 - MPMX19_03419 0.17 -0.4
811,046 - MPMX19_03419 0.17 +0.1
811,046 - MPMX19_03419 0.17 -0.1
811,046 - MPMX19_03419 0.17 +1.4
811,046 - MPMX19_03419 0.17 +0.0
811,046 - MPMX19_03419 0.17 +2.5
811,046 - MPMX19_03419 0.17 -0.2
811,345 + MPMX19_03419 0.34 -0.5
811,345 + MPMX19_03419 0.34 -1.6
811,345 + MPMX19_03419 0.34 +1.2
811,345 + MPMX19_03419 0.34 +0.6
811,346 - MPMX19_03419 0.34 -1.2
811,456 + MPMX19_03419 0.40 -0.9
811,456 + MPMX19_03419 0.40 -0.3
811,456 + MPMX19_03419 0.40 -3.0
811,456 + MPMX19_03419 0.40 -0.2
811,456 + MPMX19_03419 0.40 -1.0
811,456 + MPMX19_03419 0.40 -0.2
811,456 + MPMX19_03419 0.40 -2.0
811,456 + MPMX19_03419 0.40 -2.0
811,456 + MPMX19_03419 0.40 +0.5
811,456 + MPMX19_03419 0.40 +0.6
811,456 + MPMX19_03419 0.40 +2.0
811,456 + MPMX19_03419 0.40 -0.0
811,456 + MPMX19_03419 0.40 +0.1
811,456 + MPMX19_03419 0.40 -1.0
811,456 + MPMX19_03419 0.40 -1.0
811,456 + MPMX19_03419 0.40 -0.7
811,456 + MPMX19_03419 0.40 +0.1
811,456 + MPMX19_03419 0.40 -0.6
811,456 + MPMX19_03419 0.40 -1.6
811,456 + MPMX19_03419 0.40 +0.1
811,457 - MPMX19_03419 0.40 -0.9
811,457 - MPMX19_03419 0.40 +1.0
811,457 - MPMX19_03419 0.40 -2.2
811,457 - MPMX19_03419 0.40 -1.1
811,457 - MPMX19_03419 0.40 +1.4
811,457 - MPMX19_03419 0.40 -1.3
811,457 - MPMX19_03419 0.40 +1.0
811,457 - MPMX19_03419 0.40 -2.0
811,555 + MPMX19_03419 0.45 -0.4
811,741 + MPMX19_03419 0.56 +0.2
811,742 - MPMX19_03419 0.56 -0.2
811,771 + MPMX19_03419 0.57 -0.4
811,771 + MPMX19_03419 0.57 -1.0
811,771 + MPMX19_03419 0.57 -0.9
811,771 + MPMX19_03419 0.57 -0.4
811,772 - MPMX19_03419 0.58 -0.2
811,790 - MPMX19_03419 0.59 -0.0
811,790 - MPMX19_03419 0.59 -1.4
811,790 - MPMX19_03419 0.59 +0.1
811,790 - MPMX19_03419 0.59 -1.4
811,903 + MPMX19_03419 0.65 +0.1
811,904 - MPMX19_03419 0.65 -1.4
811,904 - MPMX19_03419 0.65 -0.1
811,904 - MPMX19_03419 0.65 +0.5
812,077 + MPMX19_03419 0.75 +0.0
812,137 + MPMX19_03419 0.78 -0.5
812,138 - MPMX19_03419 0.78 -1.0
812,138 - MPMX19_03419 0.78 -0.6
812,138 - MPMX19_03419 0.78 +0.3
812,138 - MPMX19_03419 0.78 -1.7
812,138 - MPMX19_03419 0.78 -0.0
812,453 - -0.9
812,488 + -1.6
812,488 + -0.3
812,488 + +0.5
812,488 + -2.0
812,488 + +0.5
812,488 + +0.1
812,489 - +0.4
812,489 - -0.4
812,489 - -0.5
812,489 - -1.7
812,489 - -0.6
812,489 - +0.6
812,489 - -0.5
812,489 - +1.0
812,506 + +0.8
812,506 + -0.4
812,506 + +1.0
812,507 - +0.1
812,507 - -0.7
812,807 + MPMX19_03420 0.56 -1.6
812,807 + MPMX19_03420 0.56 -1.2
812,807 + MPMX19_03420 0.56 +0.2
812,808 - MPMX19_03420 0.56 -0.4
812,808 - MPMX19_03420 0.56 -0.6
813,243 + MPMX19_03421 0.15 -1.1
813,243 + MPMX19_03421 0.15 -0.6
813,244 - MPMX19_03421 0.16 -1.5
813,244 - MPMX19_03421 0.16 -0.0
813,252 + MPMX19_03421 0.17 -0.0
813,252 + MPMX19_03421 0.17 -2.2
813,253 - MPMX19_03421 0.17 -0.4
813,253 - MPMX19_03421 0.17 +0.5

Or see this region's nucleotide sequence