Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03389

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03387 and MPMX19_03388 overlap by 4 nucleotidesMPMX19_03388 and MPMX19_03389 overlap by 13 nucleotidesMPMX19_03389 and MPMX19_03390 overlap by 8 nucleotides MPMX19_03387: MPMX19_03387 - hypothetical protein, at 771,335 to 774,394 _03387 MPMX19_03388: MPMX19_03388 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 774,391 to 775,227 _03388 MPMX19_03389: MPMX19_03389 - Carbon monoxide dehydrogenase small chain, at 775,215 to 775,745 _03389 MPMX19_03390: MPMX19_03390 - 4-chlorobenzoate--CoA ligase, at 775,738 to 777,309 _03390 Position (kb) 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1at 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 775.269 kb on + strand, within MPMX19_03389at 775.600 kb on - strand, within MPMX19_03389at 775.600 kb on - strand, within MPMX19_03389at 775.636 kb on + strand, within MPMX19_03389at 775.636 kb on + strand, within MPMX19_03389at 775.636 kb on + strand, within MPMX19_03389at 775.636 kb on + strand, within MPMX19_03389at 775.637 kb on - strand, within MPMX19_03389at 775.637 kb on - strand, within MPMX19_03389at 775.637 kb on - strand, within MPMX19_03389at 775.637 kb on - strand, within MPMX19_03389at 775.677 kb on + strand, within MPMX19_03389at 775.825 kb on + strandat 775.826 kb on - strandat 775.826 kb on - strandat 776.014 kb on + strand, within MPMX19_03390at 776.015 kb on - strand, within MPMX19_03390at 776.050 kb on + strand, within MPMX19_03390at 776.050 kb on + strand, within MPMX19_03390at 776.050 kb on + strand, within MPMX19_03390at 776.051 kb on - strand, within MPMX19_03390at 776.051 kb on - strand, within MPMX19_03390at 776.224 kb on + strand, within MPMX19_03390at 776.224 kb on + strand, within MPMX19_03390at 776.224 kb on + strand, within MPMX19_03390at 776.224 kb on + strand, within MPMX19_03390at 776.225 kb on - strand, within MPMX19_03390at 776.225 kb on - strand, within MPMX19_03390at 776.225 kb on - strand, within MPMX19_03390at 776.225 kb on - strand, within MPMX19_03390at 776.356 kb on + strand, within MPMX19_03390at 776.357 kb on - strand, within MPMX19_03390at 776.357 kb on - strand, within MPMX19_03390at 776.357 kb on - strand, within MPMX19_03390at 776.482 kb on + strand, within MPMX19_03390at 776.482 kb on + strand, within MPMX19_03390at 776.483 kb on - strand, within MPMX19_03390at 776.483 kb on - strand, within MPMX19_03390at 776.483 kb on - strand, within MPMX19_03390at 776.483 kb on - strand, within MPMX19_03390at 776.483 kb on - strand, within MPMX19_03390at 776.500 kb on + strand, within MPMX19_03390at 776.500 kb on + strand, within MPMX19_03390at 776.501 kb on - strand, within MPMX19_03390at 776.501 kb on - strand, within MPMX19_03390at 776.501 kb on - strand, within MPMX19_03390at 776.645 kb on - strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.662 kb on + strand, within MPMX19_03390at 776.663 kb on - strand, within MPMX19_03390at 776.663 kb on - strand, within MPMX19_03390at 776.663 kb on - strand, within MPMX19_03390at 776.663 kb on - strand, within MPMX19_03390at 776.663 kb on - strand, within MPMX19_03390at 776.663 kb on - strand, within MPMX19_03390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
774,412 + -1.3
774,412 + +1.4
774,412 + -1.4
774,412 + +0.0
774,412 + +0.2
774,412 + -2.6
775,269 + MPMX19_03389 0.10 -0.6
775,600 - MPMX19_03389 0.73 -1.2
775,600 - MPMX19_03389 0.73 -1.9
775,636 + MPMX19_03389 0.79 -2.9
775,636 + MPMX19_03389 0.79 -0.5
775,636 + MPMX19_03389 0.79 -0.7
775,636 + MPMX19_03389 0.79 -0.7
775,637 - MPMX19_03389 0.79 -2.6
775,637 - MPMX19_03389 0.79 -3.0
775,637 - MPMX19_03389 0.79 -1.7
775,637 - MPMX19_03389 0.79 -1.7
775,677 + MPMX19_03389 0.87 +0.1
775,825 + +1.0
775,826 - -1.3
775,826 - -1.5
776,014 + MPMX19_03390 0.18 +0.7
776,015 - MPMX19_03390 0.18 -0.5
776,050 + MPMX19_03390 0.20 -1.7
776,050 + MPMX19_03390 0.20 +0.4
776,050 + MPMX19_03390 0.20 +0.5
776,051 - MPMX19_03390 0.20 +1.0
776,051 - MPMX19_03390 0.20 -0.0
776,224 + MPMX19_03390 0.31 +0.4
776,224 + MPMX19_03390 0.31 +0.2
776,224 + MPMX19_03390 0.31 -1.2
776,224 + MPMX19_03390 0.31 -1.2
776,225 - MPMX19_03390 0.31 +0.3
776,225 - MPMX19_03390 0.31 -1.7
776,225 - MPMX19_03390 0.31 -0.3
776,225 - MPMX19_03390 0.31 -0.0
776,356 + MPMX19_03390 0.39 -0.0
776,357 - MPMX19_03390 0.39 -0.2
776,357 - MPMX19_03390 0.39 -0.9
776,357 - MPMX19_03390 0.39 -0.7
776,482 + MPMX19_03390 0.47 +0.7
776,482 + MPMX19_03390 0.47 +1.6
776,483 - MPMX19_03390 0.47 -0.2
776,483 - MPMX19_03390 0.47 +0.8
776,483 - MPMX19_03390 0.47 -0.1
776,483 - MPMX19_03390 0.47 -0.7
776,483 - MPMX19_03390 0.47 -0.3
776,500 + MPMX19_03390 0.48 -0.9
776,500 + MPMX19_03390 0.48 -1.9
776,501 - MPMX19_03390 0.49 +1.0
776,501 - MPMX19_03390 0.49 -0.4
776,501 - MPMX19_03390 0.49 -0.6
776,645 - MPMX19_03390 0.58 -0.7
776,662 + MPMX19_03390 0.59 +0.1
776,662 + MPMX19_03390 0.59 -0.7
776,662 + MPMX19_03390 0.59 -2.0
776,662 + MPMX19_03390 0.59 -1.5
776,662 + MPMX19_03390 0.59 -1.5
776,662 + MPMX19_03390 0.59 -0.9
776,662 + MPMX19_03390 0.59 -0.0
776,662 + MPMX19_03390 0.59 -0.5
776,663 - MPMX19_03390 0.59 -0.5
776,663 - MPMX19_03390 0.59 -1.9
776,663 - MPMX19_03390 0.59 -1.1
776,663 - MPMX19_03390 0.59 -0.4
776,663 - MPMX19_03390 0.59 -1.2
776,663 - MPMX19_03390 0.59 -0.5

Or see this region's nucleotide sequence