Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03364

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03363 and MPMX19_03364 are separated by 1 nucleotidesMPMX19_03364 and MPMX19_03365 are separated by 7 nucleotidesMPMX19_03365 and MPMX19_03366 are separated by 8 nucleotidesMPMX19_03366 and MPMX19_03367 are separated by 34 nucleotides MPMX19_03363: MPMX19_03363 - hypothetical protein, at 737,035 to 738,345 _03363 MPMX19_03364: MPMX19_03364 - Vitamin B12 import ATP-binding protein BtuD, at 738,347 to 740,098 _03364 MPMX19_03365: MPMX19_03365 - hypothetical protein, at 740,106 to 740,864 _03365 MPMX19_03366: MPMX19_03366 - hypothetical protein, at 740,873 to 741,043 _03366 MPMX19_03367: MPMX19_03367 - Magnetosome membrane protein 22, at 741,078 to 741,581 _03367 Position (kb) 738 739 740 741Strain fitness (log2 ratio) -2 -1 0 1 2at 737.507 kb on + strand, within MPMX19_03363at 737.507 kb on + strand, within MPMX19_03363at 737.507 kb on + strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.615 kb on + strand, within MPMX19_03363at 737.616 kb on - strand, within MPMX19_03363at 737.616 kb on - strand, within MPMX19_03363at 737.717 kb on + strand, within MPMX19_03363at 737.717 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.964 kb on - strand, within MPMX19_03363at 738.026 kb on + strand, within MPMX19_03363at 738.059 kb on + strand, within MPMX19_03363at 738.059 kb on + strand, within MPMX19_03363at 738.060 kb on - strand, within MPMX19_03363at 738.060 kb on - strand, within MPMX19_03363at 738.200 kb on + strand, within MPMX19_03363at 738.200 kb on + strand, within MPMX19_03363at 738.201 kb on - strand, within MPMX19_03363at 738.201 kb on - strand, within MPMX19_03363at 738.260 kb on + strandat 738.345 kb on + strandat 738.346 kb on - strandat 738.346 kb on - strandat 738.753 kb on + strand, within MPMX19_03364at 738.754 kb on - strand, within MPMX19_03364at 739.128 kb on + strand, within MPMX19_03364at 739.129 kb on - strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.566 kb on + strand, within MPMX19_03364at 739.566 kb on + strand, within MPMX19_03364at 739.566 kb on + strand, within MPMX19_03364at 739.566 kb on + strand, within MPMX19_03364at 739.566 kb on + strand, within MPMX19_03364at 739.567 kb on - strand, within MPMX19_03364at 739.567 kb on - strand, within MPMX19_03364at 739.567 kb on - strand, within MPMX19_03364at 739.635 kb on + strand, within MPMX19_03364at 739.635 kb on + strand, within MPMX19_03364at 739.635 kb on + strand, within MPMX19_03364at 739.635 kb on + strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.636 kb on - strand, within MPMX19_03364at 739.641 kb on + strand, within MPMX19_03364at 739.641 kb on + strand, within MPMX19_03364at 739.642 kb on - strand, within MPMX19_03364at 739.642 kb on - strand, within MPMX19_03364at 739.642 kb on - strand, within MPMX19_03364at 739.642 kb on - strand, within MPMX19_03364at 739.642 kb on - strand, within MPMX19_03364at 739.872 kb on + strand, within MPMX19_03364at 739.872 kb on + strand, within MPMX19_03364at 739.872 kb on + strand, within MPMX19_03364at 739.872 kb on + strand, within MPMX19_03364at 739.872 kb on + strand, within MPMX19_03364at 739.872 kb on + strand, within MPMX19_03364at 739.873 kb on - strand, within MPMX19_03364at 739.873 kb on - strand, within MPMX19_03364at 739.873 kb on - strand, within MPMX19_03364at 739.873 kb on - strand, within MPMX19_03364at 739.873 kb on - strand, within MPMX19_03364at 740.221 kb on + strand, within MPMX19_03365at 740.221 kb on + strand, within MPMX19_03365at 740.222 kb on - strand, within MPMX19_03365at 740.222 kb on - strand, within MPMX19_03365at 740.222 kb on - strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.392 kb on + strand, within MPMX19_03365at 740.392 kb on + strand, within MPMX19_03365at 740.392 kb on + strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.419 kb on + strand, within MPMX19_03365at 740.419 kb on + strand, within MPMX19_03365at 740.420 kb on - strand, within MPMX19_03365at 740.420 kb on - strand, within MPMX19_03365at 740.450 kb on - strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.726 kb on - strand, within MPMX19_03365at 740.726 kb on - strand, within MPMX19_03365at 740.726 kb on - strand, within MPMX19_03365at 740.731 kb on + strand, within MPMX19_03365at 740.731 kb on + strand, within MPMX19_03365at 740.732 kb on - strand, within MPMX19_03365at 740.732 kb on - strand, within MPMX19_03365at 740.767 kb on + strand, within MPMX19_03365at 740.964 kb on + strand, within MPMX19_03366at 740.964 kb on + strand, within MPMX19_03366at 740.964 kb on + strand, within MPMX19_03366at 740.964 kb on + strand, within MPMX19_03366at 740.965 kb on - strand, within MPMX19_03366at 740.965 kb on - strand, within MPMX19_03366at 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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737,507 + MPMX19_03363 0.36 -0.4
737,507 + MPMX19_03363 0.36 -1.9
737,507 + MPMX19_03363 0.36 -1.0
737,508 - MPMX19_03363 0.36 -0.2
737,508 - MPMX19_03363 0.36 +0.4
737,508 - MPMX19_03363 0.36 -0.4
737,508 - MPMX19_03363 0.36 +0.6
737,508 - MPMX19_03363 0.36 +0.1
737,508 - MPMX19_03363 0.36 +0.1
737,615 + MPMX19_03363 0.44 -1.4
737,616 - MPMX19_03363 0.44 -0.9
737,616 - MPMX19_03363 0.44 -0.9
737,717 + MPMX19_03363 0.52 -1.4
737,717 + MPMX19_03363 0.52 -0.6
737,777 + MPMX19_03363 0.57 +0.6
737,777 + MPMX19_03363 0.57 -0.9
737,777 + MPMX19_03363 0.57 +0.6
737,777 + MPMX19_03363 0.57 -0.4
737,777 + MPMX19_03363 0.57 -1.0
737,778 - MPMX19_03363 0.57 -2.1
737,778 - MPMX19_03363 0.57 -0.4
737,778 - MPMX19_03363 0.57 -0.4
737,778 - MPMX19_03363 0.57 -0.9
737,778 - MPMX19_03363 0.57 -0.3
737,804 + MPMX19_03363 0.59 -0.2
737,804 + MPMX19_03363 0.59 -0.1
737,804 + MPMX19_03363 0.59 -1.0
737,804 + MPMX19_03363 0.59 -1.4
737,804 + MPMX19_03363 0.59 +0.1
737,805 - MPMX19_03363 0.59 -0.9
737,805 - MPMX19_03363 0.59 +0.7
737,805 - MPMX19_03363 0.59 -0.5
737,805 - MPMX19_03363 0.59 -1.0
737,805 - MPMX19_03363 0.59 -1.4
737,841 - MPMX19_03363 0.61 +0.1
737,841 - MPMX19_03363 0.61 -0.9
737,841 - MPMX19_03363 0.61 -0.9
737,841 - MPMX19_03363 0.61 -1.2
737,964 - MPMX19_03363 0.71 +0.1
738,026 + MPMX19_03363 0.76 +0.1
738,059 + MPMX19_03363 0.78 -0.0
738,059 + MPMX19_03363 0.78 -0.2
738,060 - MPMX19_03363 0.78 +2.5
738,060 - MPMX19_03363 0.78 -0.9
738,200 + MPMX19_03363 0.89 -0.6
738,200 + MPMX19_03363 0.89 -1.9
738,201 - MPMX19_03363 0.89 -0.5
738,201 - MPMX19_03363 0.89 -0.0
738,260 + -1.0
738,345 + +0.1
738,346 - -2.4
738,346 - +0.4
738,753 + MPMX19_03364 0.23 -0.9
738,754 - MPMX19_03364 0.23 +1.0
739,128 + MPMX19_03364 0.45 -0.6
739,129 - MPMX19_03364 0.45 +0.5
739,194 + MPMX19_03364 0.48 -0.6
739,194 + MPMX19_03364 0.48 +0.5
739,194 + MPMX19_03364 0.48 +1.7
739,194 + MPMX19_03364 0.48 -0.9
739,194 + MPMX19_03364 0.48 -1.7
739,194 + MPMX19_03364 0.48 +1.0
739,194 + MPMX19_03364 0.48 -0.4
739,194 + MPMX19_03364 0.48 -2.0
739,194 + MPMX19_03364 0.48 -1.4
739,194 + MPMX19_03364 0.48 -0.3
739,195 - MPMX19_03364 0.48 -0.6
739,195 - MPMX19_03364 0.48 -0.0
739,195 - MPMX19_03364 0.48 -0.6
739,195 - MPMX19_03364 0.48 -0.6
739,195 - MPMX19_03364 0.48 -0.6
739,195 - MPMX19_03364 0.48 +0.1
739,566 + MPMX19_03364 0.70 -0.7
739,566 + MPMX19_03364 0.70 -0.9
739,566 + MPMX19_03364 0.70 -1.0
739,566 + MPMX19_03364 0.70 +1.5
739,566 + MPMX19_03364 0.70 -2.2
739,567 - MPMX19_03364 0.70 -2.7
739,567 - MPMX19_03364 0.70 -0.4
739,567 - MPMX19_03364 0.70 +1.7
739,635 + MPMX19_03364 0.74 +0.6
739,635 + MPMX19_03364 0.74 -0.2
739,635 + MPMX19_03364 0.74 -2.1
739,635 + MPMX19_03364 0.74 -0.2
739,636 - MPMX19_03364 0.74 +0.3
739,636 - MPMX19_03364 0.74 -1.7
739,636 - MPMX19_03364 0.74 -0.2
739,636 - MPMX19_03364 0.74 -0.7
739,636 - MPMX19_03364 0.74 -1.0
739,636 - MPMX19_03364 0.74 +0.6
739,636 - MPMX19_03364 0.74 -1.0
739,636 - MPMX19_03364 0.74 -0.0
739,636 - MPMX19_03364 0.74 -0.6
739,636 - MPMX19_03364 0.74 -1.0
739,641 + MPMX19_03364 0.74 -0.0
739,641 + MPMX19_03364 0.74 +0.5
739,642 - MPMX19_03364 0.74 +0.4
739,642 - MPMX19_03364 0.74 -1.2
739,642 - MPMX19_03364 0.74 +0.1
739,642 - MPMX19_03364 0.74 +0.6
739,642 - MPMX19_03364 0.74 +0.4
739,872 + MPMX19_03364 0.87 +1.6
739,872 + MPMX19_03364 0.87 -1.6
739,872 + MPMX19_03364 0.87 +0.4
739,872 + MPMX19_03364 0.87 -1.2
739,872 + MPMX19_03364 0.87 -0.7
739,872 + MPMX19_03364 0.87 +1.0
739,873 - MPMX19_03364 0.87 -0.7
739,873 - MPMX19_03364 0.87 +1.0
739,873 - MPMX19_03364 0.87 -1.2
739,873 - MPMX19_03364 0.87 -0.5
739,873 - MPMX19_03364 0.87 +0.6
740,221 + MPMX19_03365 0.15 -2.7
740,221 + MPMX19_03365 0.15 -0.9
740,222 - MPMX19_03365 0.15 +0.2
740,222 - MPMX19_03365 0.15 +0.4
740,222 - MPMX19_03365 0.15 -0.7
740,293 + MPMX19_03365 0.25 +0.4
740,293 + MPMX19_03365 0.25 -2.0
740,293 + MPMX19_03365 0.25 -0.0
740,293 + MPMX19_03365 0.25 -1.6
740,293 + MPMX19_03365 0.25 -1.2
740,293 + MPMX19_03365 0.25 -1.3
740,294 - MPMX19_03365 0.25 +0.4
740,294 - MPMX19_03365 0.25 -1.6
740,294 - MPMX19_03365 0.25 -2.3
740,294 - MPMX19_03365 0.25 -0.4
740,294 - MPMX19_03365 0.25 -1.5
740,294 - MPMX19_03365 0.25 -0.4
740,294 - MPMX19_03365 0.25 -0.5
740,294 - MPMX19_03365 0.25 -0.5
740,294 - MPMX19_03365 0.25 -1.5
740,392 + MPMX19_03365 0.38 -1.0
740,392 + MPMX19_03365 0.38 -0.1
740,392 + MPMX19_03365 0.38 -0.6
740,393 - MPMX19_03365 0.38 -1.5
740,393 - MPMX19_03365 0.38 +1.1
740,393 - MPMX19_03365 0.38 +0.1
740,393 - MPMX19_03365 0.38 +0.0
740,419 + MPMX19_03365 0.41 +0.3
740,419 + MPMX19_03365 0.41 +0.5
740,420 - MPMX19_03365 0.41 +0.6
740,420 - MPMX19_03365 0.41 -2.5
740,450 - MPMX19_03365 0.45 -0.5
740,545 + MPMX19_03365 0.58 +0.4
740,545 + MPMX19_03365 0.58 -0.0
740,545 + MPMX19_03365 0.58 -0.9
740,545 + MPMX19_03365 0.58 +0.1
740,545 + MPMX19_03365 0.58 -2.2
740,546 - MPMX19_03365 0.58 -0.8
740,546 - MPMX19_03365 0.58 +0.1
740,546 - MPMX19_03365 0.58 -1.4
740,546 - MPMX19_03365 0.58 -0.0
740,725 + MPMX19_03365 0.82 -0.5
740,725 + MPMX19_03365 0.82 -1.0
740,725 + MPMX19_03365 0.82 -1.6
740,725 + MPMX19_03365 0.82 -1.0
740,725 + MPMX19_03365 0.82 -0.3
740,725 + MPMX19_03365 0.82 -1.1
740,725 + MPMX19_03365 0.82 -0.0
740,725 + MPMX19_03365 0.82 -1.0
740,725 + MPMX19_03365 0.82 +0.0
740,725 + MPMX19_03365 0.82 -0.2
740,726 - MPMX19_03365 0.82 -1.6
740,726 - MPMX19_03365 0.82 +0.6
740,726 - MPMX19_03365 0.82 -0.2
740,731 + MPMX19_03365 0.82 -2.1
740,731 + MPMX19_03365 0.82 -1.0
740,732 - MPMX19_03365 0.82 -0.5
740,732 - MPMX19_03365 0.82 -1.3
740,767 + MPMX19_03365 0.87 +1.6
740,964 + MPMX19_03366 0.53 -0.7
740,964 + MPMX19_03366 0.53 -0.2
740,964 + MPMX19_03366 0.53 -0.6
740,964 + MPMX19_03366 0.53 -1.0
740,965 - MPMX19_03366 0.54 -0.3
740,965 - MPMX19_03366 0.54 -0.4
741,027 + +0.1
741,027 + -0.1
741,027 + -1.2
741,027 + -2.4
741,027 + -0.7
741,027 + +0.4
741,027 + -1.0
741,027 + -1.1
741,027 + +0.1
741,027 + -1.2
741,027 + +1.0
741,027 + -2.1
741,028 - -0.5
741,028 - -0.7
741,028 - +0.4
741,028 - -1.0
741,028 - -0.9
741,028 - -1.0
741,028 - +0.1
741,028 - -1.6
741,028 - -1.5
741,028 - -0.4
741,028 - -1.9

Or see this region's nucleotide sequence