Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03333 and MPMX19_03334 overlap by 4 nucleotides MPMX19_03334 and MPMX19_03335 are separated by 183 nucleotides MPMX19_03335 and MPMX19_03336 are separated by 43 nucleotides
MPMX19_03333: MPMX19_03333 - hypothetical protein, at 687,059 to 688,237
_03333
MPMX19_03334: MPMX19_03334 - Alanine racemase 1, at 688,234 to 689,343
_03334
MPMX19_03335: MPMX19_03335 - hypothetical protein, at 689,527 to 690,003
_03335
MPMX19_03336: MPMX19_03336 - hypothetical protein, at 690,047 to 691,135
_03336
Position (kb)
688
689
690 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.402 kb on + strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.403 kb on - strand, within MPMX19_03333 at 687.456 kb on + strand, within MPMX19_03333 at 687.456 kb on + strand, within MPMX19_03333 at 687.457 kb on - strand, within MPMX19_03333 at 687.459 kb on + strand, within MPMX19_03333 at 687.459 kb on + strand, within MPMX19_03333 at 687.459 kb on + strand, within MPMX19_03333 at 687.459 kb on + strand, within MPMX19_03333 at 687.459 kb on + strand, within MPMX19_03333 at 687.460 kb on - strand, within MPMX19_03333 at 687.460 kb on - strand, within MPMX19_03333 at 687.460 kb on - strand, within MPMX19_03333 at 687.460 kb on - strand, within MPMX19_03333 at 687.588 kb on + strand, within MPMX19_03333 at 687.588 kb on + strand, within MPMX19_03333 at 687.648 kb on + strand, within MPMX19_03333 at 687.649 kb on - strand, within MPMX19_03333 at 687.975 kb on + strand, within MPMX19_03333 at 687.976 kb on - strand, within MPMX19_03333 at 688.050 kb on + strand, within MPMX19_03333 at 688.050 kb on + strand, within MPMX19_03333 at 688.050 kb on + strand, within MPMX19_03333 at 688.050 kb on + strand, within MPMX19_03333 at 688.051 kb on - strand, within MPMX19_03333 at 688.051 kb on - strand, within MPMX19_03333 at 688.051 kb on - strand, within MPMX19_03333 at 688.051 kb on - strand, within MPMX19_03333 at 688.092 kb on + strand, within MPMX19_03333 at 688.092 kb on + strand, within MPMX19_03333 at 688.093 kb on - strand, within MPMX19_03333 at 688.093 kb on - strand, within MPMX19_03333 at 688.517 kb on + strand, within MPMX19_03334 at 688.517 kb on + strand, within MPMX19_03334 at 688.518 kb on - strand, within MPMX19_03334 at 688.518 kb on - strand, within MPMX19_03334 at 688.518 kb on - strand, within MPMX19_03334 at 688.518 kb on - strand, within MPMX19_03334 at 688.532 kb on + strand, within MPMX19_03334 at 688.532 kb on + strand, within MPMX19_03334 at 688.533 kb on - strand, within MPMX19_03334 at 688.533 kb on - strand, within MPMX19_03334 at 688.533 kb on - strand, within MPMX19_03334 at 688.626 kb on - strand, within MPMX19_03334 at 688.740 kb on - strand, within MPMX19_03334 at 688.765 kb on - strand, within MPMX19_03334 at 688.765 kb on - strand, within MPMX19_03334 at 689.294 kb on + strand at 689.294 kb on + strand at 689.294 kb on + strand at 689.294 kb on + strand at 689.295 kb on - strand at 689.295 kb on - strand at 689.382 kb on + strand at 689.383 kb on - strand at 689.421 kb on + strand at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 690.024 kb on + strand at 690.024 kb on + strand at 690.105 kb on + strand at 690.105 kb on + strand at 690.106 kb on - strand at 690.106 kb on - strand at 690.106 kb on - strand at 690.204 kb on + strand, within MPMX19_03336 at 690.205 kb on - strand, within MPMX19_03336 at 690.205 kb on - strand, within MPMX19_03336 at 690.205 kb on - strand, within MPMX19_03336
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 687,402 + MPMX19_03333 0.29 -0.0 687,402 + MPMX19_03333 0.29 +0.3 687,402 + MPMX19_03333 0.29 -0.7 687,402 + MPMX19_03333 0.29 -1.6 687,402 + MPMX19_03333 0.29 -0.8 687,402 + MPMX19_03333 0.29 -0.0 687,402 + MPMX19_03333 0.29 -0.6 687,402 + MPMX19_03333 0.29 -1.0 687,402 + MPMX19_03333 0.29 -1.2 687,402 + MPMX19_03333 0.29 -1.9 687,402 + MPMX19_03333 0.29 -1.8 687,402 + MPMX19_03333 0.29 -0.7 687,402 + MPMX19_03333 0.29 -1.4 687,402 + MPMX19_03333 0.29 -1.0 687,402 + MPMX19_03333 0.29 -0.5 687,402 + MPMX19_03333 0.29 -0.1 687,402 + MPMX19_03333 0.29 -0.4 687,402 + MPMX19_03333 0.29 -0.0 687,402 + MPMX19_03333 0.29 -1.4 687,402 + MPMX19_03333 0.29 +0.5 687,402 + MPMX19_03333 0.29 -1.7 687,402 + MPMX19_03333 0.29 +0.2 687,402 + MPMX19_03333 0.29 -2.0 687,403 - MPMX19_03333 0.29 +1.0 687,403 - MPMX19_03333 0.29 -1.0 687,403 - MPMX19_03333 0.29 -0.7 687,403 - MPMX19_03333 0.29 -1.2 687,403 - MPMX19_03333 0.29 +0.2 687,403 - MPMX19_03333 0.29 +0.0 687,403 - MPMX19_03333 0.29 -1.2 687,403 - MPMX19_03333 0.29 -1.9 687,403 - MPMX19_03333 0.29 -1.5 687,403 - MPMX19_03333 0.29 -2.1 687,403 - MPMX19_03333 0.29 +1.1 687,403 - MPMX19_03333 0.29 -2.6 687,456 + MPMX19_03333 0.34 -0.2 687,456 + MPMX19_03333 0.34 -0.4 687,457 - MPMX19_03333 0.34 -0.7 687,459 + MPMX19_03333 0.34 -0.8 687,459 + MPMX19_03333 0.34 -1.8 687,459 + MPMX19_03333 0.34 +1.5 687,459 + MPMX19_03333 0.34 -0.8 687,459 + MPMX19_03333 0.34 +0.2 687,460 - MPMX19_03333 0.34 -0.2 687,460 - MPMX19_03333 0.34 -0.6 687,460 - MPMX19_03333 0.34 +1.0 687,460 - MPMX19_03333 0.34 -1.8 687,588 + MPMX19_03333 0.45 +0.2 687,588 + MPMX19_03333 0.45 -1.8 687,648 + MPMX19_03333 0.50 -1.0 687,649 - MPMX19_03333 0.50 -1.0 687,975 + MPMX19_03333 0.78 +1.2 687,976 - MPMX19_03333 0.78 -0.0 688,050 + MPMX19_03333 0.84 -0.5 688,050 + MPMX19_03333 0.84 +1.5 688,050 + MPMX19_03333 0.84 -0.9 688,050 + MPMX19_03333 0.84 -0.2 688,051 - MPMX19_03333 0.84 -1.6 688,051 - MPMX19_03333 0.84 -0.5 688,051 - MPMX19_03333 0.84 +0.3 688,051 - MPMX19_03333 0.84 -1.5 688,092 + MPMX19_03333 0.88 +0.4 688,092 + MPMX19_03333 0.88 +0.1 688,093 - MPMX19_03333 0.88 -1.1 688,093 - MPMX19_03333 0.88 -0.0 688,517 + MPMX19_03334 0.25 -0.1 688,517 + MPMX19_03334 0.25 -0.6 688,518 - MPMX19_03334 0.26 -0.9 688,518 - MPMX19_03334 0.26 +1.3 688,518 - MPMX19_03334 0.26 -0.0 688,518 - MPMX19_03334 0.26 -1.4 688,532 + MPMX19_03334 0.27 -1.2 688,532 + MPMX19_03334 0.27 -0.6 688,533 - MPMX19_03334 0.27 -2.0 688,533 - MPMX19_03334 0.27 -2.4 688,533 - MPMX19_03334 0.27 -1.6 688,626 - MPMX19_03334 0.35 -1.6 688,740 - MPMX19_03334 0.46 -0.0 688,765 - MPMX19_03334 0.48 -1.7 688,765 - MPMX19_03334 0.48 -1.4 689,294 + -1.2 689,294 + -0.8 689,294 + +1.0 689,294 + -1.0 689,295 - -1.4 689,295 - -0.1 689,382 + -1.0 689,383 - -0.8 689,421 + +0.4 689,730 - MPMX19_03335 0.43 +1.2 689,730 - MPMX19_03335 0.43 -2.8 689,730 - MPMX19_03335 0.43 +1.2 689,730 - MPMX19_03335 0.43 -0.8 689,730 - MPMX19_03335 0.43 -1.4 689,730 - MPMX19_03335 0.43 -1.1 689,730 - MPMX19_03335 0.43 -0.6 690,024 + -1.3 690,024 + +0.1 690,105 + -0.9 690,105 + -1.0 690,106 - -1.0 690,106 - -0.8 690,106 - -0.8 690,204 + MPMX19_03336 0.14 -1.0 690,205 - MPMX19_03336 0.15 +0.8 690,205 - MPMX19_03336 0.15 -0.4 690,205 - MPMX19_03336 0.15 +0.3
Or see this region's nucleotide sequence