Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03334

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03333 and MPMX19_03334 overlap by 4 nucleotidesMPMX19_03334 and MPMX19_03335 are separated by 183 nucleotidesMPMX19_03335 and MPMX19_03336 are separated by 43 nucleotides MPMX19_03333: MPMX19_03333 - hypothetical protein, at 687,059 to 688,237 _03333 MPMX19_03334: MPMX19_03334 - Alanine racemase 1, at 688,234 to 689,343 _03334 MPMX19_03335: MPMX19_03335 - hypothetical protein, at 689,527 to 690,003 _03335 MPMX19_03336: MPMX19_03336 - hypothetical protein, at 690,047 to 691,135 _03336 Position (kb) 688 689 690Strain fitness (log2 ratio) -3 -2 -1 0 1at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.456 kb on + strand, within MPMX19_03333at 687.456 kb on + strand, within MPMX19_03333at 687.457 kb on - strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.588 kb on + strand, within MPMX19_03333at 687.588 kb on + strand, within MPMX19_03333at 687.648 kb on + strand, within MPMX19_03333at 687.649 kb on - strand, within MPMX19_03333at 687.975 kb on + strand, within MPMX19_03333at 687.976 kb on - strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.092 kb on + strand, within MPMX19_03333at 688.092 kb on + strand, within MPMX19_03333at 688.093 kb on - strand, within MPMX19_03333at 688.093 kb on - strand, within MPMX19_03333at 688.517 kb on + strand, within MPMX19_03334at 688.517 kb on + strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.532 kb on + strand, within MPMX19_03334at 688.532 kb on + strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.626 kb on - strand, within MPMX19_03334at 688.740 kb on - strand, within MPMX19_03334at 688.765 kb on - strand, within MPMX19_03334at 688.765 kb on - strand, within MPMX19_03334at 689.294 kb on + strandat 689.294 kb on + strandat 689.294 kb on + strandat 689.294 kb on + strandat 689.295 kb on - strandat 689.295 kb on - strandat 689.382 kb on + strandat 689.383 kb on - strandat 689.421 kb on + strandat 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 690.024 kb on + strandat 690.024 kb on + strandat 690.105 kb on + strandat 690.105 kb on + strandat 690.106 kb on - strandat 690.106 kb on - strandat 690.106 kb on - strandat 690.204 kb on + strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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687,402 + MPMX19_03333 0.29 -0.0
687,402 + MPMX19_03333 0.29 +0.3
687,402 + MPMX19_03333 0.29 -0.7
687,402 + MPMX19_03333 0.29 -1.6
687,402 + MPMX19_03333 0.29 -0.8
687,402 + MPMX19_03333 0.29 -0.0
687,402 + MPMX19_03333 0.29 -0.6
687,402 + MPMX19_03333 0.29 -1.0
687,402 + MPMX19_03333 0.29 -1.2
687,402 + MPMX19_03333 0.29 -1.9
687,402 + MPMX19_03333 0.29 -1.8
687,402 + MPMX19_03333 0.29 -0.7
687,402 + MPMX19_03333 0.29 -1.4
687,402 + MPMX19_03333 0.29 -1.0
687,402 + MPMX19_03333 0.29 -0.5
687,402 + MPMX19_03333 0.29 -0.1
687,402 + MPMX19_03333 0.29 -0.4
687,402 + MPMX19_03333 0.29 -0.0
687,402 + MPMX19_03333 0.29 -1.4
687,402 + MPMX19_03333 0.29 +0.5
687,402 + MPMX19_03333 0.29 -1.7
687,402 + MPMX19_03333 0.29 +0.2
687,402 + MPMX19_03333 0.29 -2.0
687,403 - MPMX19_03333 0.29 +1.0
687,403 - MPMX19_03333 0.29 -1.0
687,403 - MPMX19_03333 0.29 -0.7
687,403 - MPMX19_03333 0.29 -1.2
687,403 - MPMX19_03333 0.29 +0.2
687,403 - MPMX19_03333 0.29 +0.0
687,403 - MPMX19_03333 0.29 -1.2
687,403 - MPMX19_03333 0.29 -1.9
687,403 - MPMX19_03333 0.29 -1.5
687,403 - MPMX19_03333 0.29 -2.1
687,403 - MPMX19_03333 0.29 +1.1
687,403 - MPMX19_03333 0.29 -2.6
687,456 + MPMX19_03333 0.34 -0.2
687,456 + MPMX19_03333 0.34 -0.4
687,457 - MPMX19_03333 0.34 -0.7
687,459 + MPMX19_03333 0.34 -0.8
687,459 + MPMX19_03333 0.34 -1.8
687,459 + MPMX19_03333 0.34 +1.5
687,459 + MPMX19_03333 0.34 -0.8
687,459 + MPMX19_03333 0.34 +0.2
687,460 - MPMX19_03333 0.34 -0.2
687,460 - MPMX19_03333 0.34 -0.6
687,460 - MPMX19_03333 0.34 +1.0
687,460 - MPMX19_03333 0.34 -1.8
687,588 + MPMX19_03333 0.45 +0.2
687,588 + MPMX19_03333 0.45 -1.8
687,648 + MPMX19_03333 0.50 -1.0
687,649 - MPMX19_03333 0.50 -1.0
687,975 + MPMX19_03333 0.78 +1.2
687,976 - MPMX19_03333 0.78 -0.0
688,050 + MPMX19_03333 0.84 -0.5
688,050 + MPMX19_03333 0.84 +1.5
688,050 + MPMX19_03333 0.84 -0.9
688,050 + MPMX19_03333 0.84 -0.2
688,051 - MPMX19_03333 0.84 -1.6
688,051 - MPMX19_03333 0.84 -0.5
688,051 - MPMX19_03333 0.84 +0.3
688,051 - MPMX19_03333 0.84 -1.5
688,092 + MPMX19_03333 0.88 +0.4
688,092 + MPMX19_03333 0.88 +0.1
688,093 - MPMX19_03333 0.88 -1.1
688,093 - MPMX19_03333 0.88 -0.0
688,517 + MPMX19_03334 0.25 -0.1
688,517 + MPMX19_03334 0.25 -0.6
688,518 - MPMX19_03334 0.26 -0.9
688,518 - MPMX19_03334 0.26 +1.3
688,518 - MPMX19_03334 0.26 -0.0
688,518 - MPMX19_03334 0.26 -1.4
688,532 + MPMX19_03334 0.27 -1.2
688,532 + MPMX19_03334 0.27 -0.6
688,533 - MPMX19_03334 0.27 -2.0
688,533 - MPMX19_03334 0.27 -2.4
688,533 - MPMX19_03334 0.27 -1.6
688,626 - MPMX19_03334 0.35 -1.6
688,740 - MPMX19_03334 0.46 -0.0
688,765 - MPMX19_03334 0.48 -1.7
688,765 - MPMX19_03334 0.48 -1.4
689,294 + -1.2
689,294 + -0.8
689,294 + +1.0
689,294 + -1.0
689,295 - -1.4
689,295 - -0.1
689,382 + -1.0
689,383 - -0.8
689,421 + +0.4
689,730 - MPMX19_03335 0.43 +1.2
689,730 - MPMX19_03335 0.43 -2.8
689,730 - MPMX19_03335 0.43 +1.2
689,730 - MPMX19_03335 0.43 -0.8
689,730 - MPMX19_03335 0.43 -1.4
689,730 - MPMX19_03335 0.43 -1.1
689,730 - MPMX19_03335 0.43 -0.6
690,024 + -1.3
690,024 + +0.1
690,105 + -0.9
690,105 + -1.0
690,106 - -1.0
690,106 - -0.8
690,106 - -0.8
690,204 + MPMX19_03336 0.14 -1.0
690,205 - MPMX19_03336 0.15 +0.8
690,205 - MPMX19_03336 0.15 -0.4
690,205 - MPMX19_03336 0.15 +0.3

Or see this region's nucleotide sequence