Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03316

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03315 and MPMX19_03316 are separated by 39 nucleotidesMPMX19_03316 and MPMX19_03317 are separated by 305 nucleotides MPMX19_03315: MPMX19_03315 - Transcriptional regulator KdgR, at 662,795 to 663,610 _03315 MPMX19_03316: MPMX19_03316 - hypothetical protein, at 663,650 to 664,879 _03316 MPMX19_03317: MPMX19_03317 - hypothetical protein, at 665,185 to 666,366 _03317 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2at 662.821 kb on + strandat 662.822 kb on - strandat 662.892 kb on + strand, within MPMX19_03315at 662.892 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.249 kb on + strand, within MPMX19_03315at 663.249 kb on + strand, within MPMX19_03315at 663.250 kb on - strand, within MPMX19_03315at 663.250 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.387 kb on + strand, within MPMX19_03315at 663.387 kb on + strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.647 kb on + strandat 663.652 kb on - strandat 663.807 kb on + strand, within MPMX19_03316at 663.807 kb on + strand, within MPMX19_03316at 663.808 kb on - strand, within MPMX19_03316at 663.822 kb on + strand, within MPMX19_03316at 663.823 kb on - strand, within MPMX19_03316at 663.939 kb on + strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.978 kb on + strand, within MPMX19_03316at 663.978 kb on + strand, within MPMX19_03316at 663.978 kb on + strand, within MPMX19_03316at 663.979 kb on - strand, within MPMX19_03316at 663.979 kb on - strand, within MPMX19_03316at 663.979 kb on - strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.102 kb on - strand, within MPMX19_03316at 664.203 kb on + strand, within MPMX19_03316at 664.204 kb on - strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.219 kb on - strand, within MPMX19_03316at 664.546 kb on - strand, within MPMX19_03316at 664.654 kb on - strand, within MPMX19_03316at 664.654 kb on - strand, within MPMX19_03316at 664.654 kb on - strand, within MPMX19_03316at 664.678 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.681 kb on - strand, within MPMX19_03316at 664.681 kb on - strand, within MPMX19_03316at 664.722 kb on + strand, within MPMX19_03316at 664.723 kb on - strand, within MPMX19_03316at 664.916 kb on + strandat 664.917 kb on - strandat 664.921 kb on - strandat 664.960 kb on + strandat 664.961 kb on - strandat 664.961 kb on - strandat 664.988 kb on + strandat 664.988 kb on + strandat 665.042 kb on + strandat 665.042 kb on + strandat 665.042 kb on + strandat 665.042 kb on + strandat 665.301 kb on - strandat 665.301 kb on - strandat 665.301 kb on - strandat 665.303 kb on + strandat 665.303 kb on + strandat 665.304 kb on - strand, within MPMX19_03317at 665.304 kb on - strand, within MPMX19_03317at 665.304 kb on - strand, within MPMX19_03317at 665.324 kb on + strand, within MPMX19_03317at 665.324 kb on + strand, within MPMX19_03317at 665.450 kb on + strand, within MPMX19_03317at 665.450 kb on + strand, within MPMX19_03317at 665.451 kb on - strand, within MPMX19_03317at 665.451 kb on - strand, within MPMX19_03317at 665.546 kb on + strand, within MPMX19_03317at 665.589 kb on - strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.786 kb on + strand, within MPMX19_03317at 665.786 kb on + strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.829 kb on - strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.860 kb on - strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.876 kb on + strand, within MPMX19_03317

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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662,821 + -1.6
662,822 - -2.3
662,892 + MPMX19_03315 0.12 -1.1
662,892 + MPMX19_03315 0.12 -0.8
663,075 + MPMX19_03315 0.34 +0.1
663,075 + MPMX19_03315 0.34 -0.6
663,075 + MPMX19_03315 0.34 -0.8
663,075 + MPMX19_03315 0.34 -2.0
663,076 - MPMX19_03315 0.34 -0.2
663,076 - MPMX19_03315 0.34 -0.2
663,076 - MPMX19_03315 0.34 -0.3
663,076 - MPMX19_03315 0.34 -0.2
663,076 - MPMX19_03315 0.34 -0.7
663,249 + MPMX19_03315 0.56 -1.5
663,249 + MPMX19_03315 0.56 -0.6
663,250 - MPMX19_03315 0.56 -1.2
663,250 - MPMX19_03315 0.56 -0.3
663,386 - MPMX19_03315 0.72 -2.7
663,386 - MPMX19_03315 0.72 +1.6
663,386 - MPMX19_03315 0.72 -0.9
663,387 + MPMX19_03315 0.73 -0.5
663,387 + MPMX19_03315 0.73 +1.0
663,388 - MPMX19_03315 0.73 -0.2
663,388 - MPMX19_03315 0.73 -0.5
663,388 - MPMX19_03315 0.73 -1.3
663,647 + +0.8
663,652 - -0.6
663,807 + MPMX19_03316 0.13 -0.7
663,807 + MPMX19_03316 0.13 -1.0
663,808 - MPMX19_03316 0.13 -1.3
663,822 + MPMX19_03316 0.14 -0.6
663,823 - MPMX19_03316 0.14 -1.2
663,939 + MPMX19_03316 0.23 -0.8
663,940 - MPMX19_03316 0.24 +0.8
663,940 - MPMX19_03316 0.24 -2.3
663,940 - MPMX19_03316 0.24 -2.2
663,940 - MPMX19_03316 0.24 -0.1
663,978 + MPMX19_03316 0.27 -0.4
663,978 + MPMX19_03316 0.27 -0.7
663,978 + MPMX19_03316 0.27 +1.5
663,979 - MPMX19_03316 0.27 -0.5
663,979 - MPMX19_03316 0.27 -0.8
663,979 - MPMX19_03316 0.27 +0.6
664,101 + MPMX19_03316 0.37 -0.6
664,101 + MPMX19_03316 0.37 -1.8
664,101 + MPMX19_03316 0.37 -2.3
664,101 + MPMX19_03316 0.37 +0.5
664,102 - MPMX19_03316 0.37 -0.9
664,203 + MPMX19_03316 0.45 -0.6
664,204 - MPMX19_03316 0.45 -0.8
664,218 + MPMX19_03316 0.46 -1.6
664,218 + MPMX19_03316 0.46 -1.7
664,218 + MPMX19_03316 0.46 +1.0
664,218 + MPMX19_03316 0.46 -0.2
664,218 + MPMX19_03316 0.46 -1.1
664,219 - MPMX19_03316 0.46 -1.8
664,546 - MPMX19_03316 0.73 -0.7
664,654 - MPMX19_03316 0.82 -0.9
664,654 - MPMX19_03316 0.82 -0.3
664,654 - MPMX19_03316 0.82 -2.3
664,678 + MPMX19_03316 0.84 -1.9
664,680 + MPMX19_03316 0.84 -0.3
664,680 + MPMX19_03316 0.84 -0.3
664,680 + MPMX19_03316 0.84 -0.3
664,680 + MPMX19_03316 0.84 +0.4
664,681 - MPMX19_03316 0.84 -1.0
664,681 - MPMX19_03316 0.84 -0.4
664,722 + MPMX19_03316 0.87 +0.8
664,723 - MPMX19_03316 0.87 -0.0
664,916 + -1.8
664,917 - -0.0
664,921 - -0.8
664,960 + -0.6
664,961 - -0.2
664,961 - -0.4
664,988 + -0.9
664,988 + +1.2
665,042 + -0.3
665,042 + -0.0
665,042 + -0.1
665,042 + -0.7
665,301 - -1.2
665,301 - -0.6
665,301 - -0.4
665,303 + -0.4
665,303 + +0.1
665,304 - MPMX19_03317 0.10 -0.7
665,304 - MPMX19_03317 0.10 -1.8
665,304 - MPMX19_03317 0.10 -0.7
665,324 + MPMX19_03317 0.12 -1.1
665,324 + MPMX19_03317 0.12 -1.6
665,450 + MPMX19_03317 0.22 +0.7
665,450 + MPMX19_03317 0.22 -0.3
665,451 - MPMX19_03317 0.23 -0.2
665,451 - MPMX19_03317 0.23 -0.4
665,546 + MPMX19_03317 0.31 -0.4
665,589 - MPMX19_03317 0.34 -1.4
665,768 + MPMX19_03317 0.49 +0.7
665,768 + MPMX19_03317 0.49 -0.6
665,768 + MPMX19_03317 0.49 -1.3
665,768 + MPMX19_03317 0.49 -1.6
665,768 + MPMX19_03317 0.49 -0.3
665,768 + MPMX19_03317 0.49 -0.3
665,768 + MPMX19_03317 0.49 +1.0
665,768 + MPMX19_03317 0.49 -1.8
665,771 + MPMX19_03317 0.50 -1.9
665,771 + MPMX19_03317 0.50 -1.0
665,771 + MPMX19_03317 0.50 -1.9
665,771 + MPMX19_03317 0.50 +0.3
665,772 - MPMX19_03317 0.50 +0.4
665,772 - MPMX19_03317 0.50 -0.7
665,772 - MPMX19_03317 0.50 +2.0
665,772 - MPMX19_03317 0.50 -1.0
665,772 - MPMX19_03317 0.50 -1.9
665,772 - MPMX19_03317 0.50 -0.1
665,772 - MPMX19_03317 0.50 -2.5
665,772 - MPMX19_03317 0.50 +0.2
665,772 - MPMX19_03317 0.50 -2.5
665,786 + MPMX19_03317 0.51 +0.7
665,786 + MPMX19_03317 0.51 -1.6
665,787 - MPMX19_03317 0.51 +0.4
665,787 - MPMX19_03317 0.51 -0.2
665,787 - MPMX19_03317 0.51 -1.1
665,787 - MPMX19_03317 0.51 +0.2
665,828 + MPMX19_03317 0.54 +1.4
665,828 + MPMX19_03317 0.54 -1.4
665,828 + MPMX19_03317 0.54 -1.1
665,829 - MPMX19_03317 0.54 -0.3
665,859 + MPMX19_03317 0.57 -2.4
665,859 + MPMX19_03317 0.57 -0.6
665,859 + MPMX19_03317 0.57 -1.5
665,859 + MPMX19_03317 0.57 -0.6
665,859 + MPMX19_03317 0.57 -0.3
665,860 - MPMX19_03317 0.57 +1.1
665,861 + MPMX19_03317 0.57 +0.6
665,861 + MPMX19_03317 0.57 +0.2
665,861 + MPMX19_03317 0.57 -1.3
665,861 + MPMX19_03317 0.57 -0.9
665,861 + MPMX19_03317 0.57 +0.3
665,861 + MPMX19_03317 0.57 -0.9
665,862 - MPMX19_03317 0.57 -0.2
665,862 - MPMX19_03317 0.57 +0.2
665,862 - MPMX19_03317 0.57 -0.4
665,862 - MPMX19_03317 0.57 -2.0
665,862 - MPMX19_03317 0.57 +0.5
665,862 - MPMX19_03317 0.57 -0.3
665,876 + MPMX19_03317 0.58 +0.7

Or see this region's nucleotide sequence