Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03296 and MPMX19_03297 overlap by 4 nucleotides MPMX19_03297 and MPMX19_03298 are separated by 11 nucleotides MPMX19_03298 and MPMX19_03299 are separated by 29 nucleotides
MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093
_03296
MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803
_03297
MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546
_03298
MPMX19_03299: MPMX19_03299 - 4-hydroxy-tetrahydrodipicolinate synthase, at 645,576 to 646,475
_03299
Position (kb) 644
645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on - strand, within MPMX19_03296 at 643.453 kb on - strand, within MPMX19_03296 at 643.453 kb on - strand, within MPMX19_03296 at 643.611 kb on + strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.885 kb on - strand, within MPMX19_03296 at 644.224 kb on + strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.304 kb on - strand, within MPMX19_03297 at 644.808 kb on + strand at 645.008 kb on + strand, within MPMX19_03298 at 645.008 kb on + strand, within MPMX19_03298 at 645.461 kb on + strand, within MPMX19_03298 at 645.461 kb on + strand, within MPMX19_03298 at 645.462 kb on - strand, within MPMX19_03298 at 645.644 kb on + strand at 645.644 kb on + strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 643,452 + MPMX19_03296 0.32 +0.1 643,452 + MPMX19_03296 0.32 -0.2 643,452 + MPMX19_03296 0.32 +1.3 643,452 + MPMX19_03296 0.32 -0.7 643,452 - MPMX19_03296 0.32 -0.9 643,453 - MPMX19_03296 0.32 -2.1 643,453 - MPMX19_03296 0.32 +0.7 643,611 + MPMX19_03296 0.49 +0.8 643,612 - MPMX19_03296 0.49 +1.0 643,612 - MPMX19_03296 0.49 +1.0 643,612 - MPMX19_03296 0.49 -1.0 643,653 + MPMX19_03296 0.53 +0.8 643,653 + MPMX19_03296 0.53 +0.7 643,653 + MPMX19_03296 0.53 +0.2 643,654 - MPMX19_03296 0.53 -0.6 643,654 - MPMX19_03296 0.53 -0.4 643,654 - MPMX19_03296 0.53 -0.1 643,848 + MPMX19_03296 0.74 -0.7 643,848 + MPMX19_03296 0.74 +2.2 643,848 + MPMX19_03296 0.74 +0.6 643,849 - MPMX19_03296 0.74 +0.3 643,849 - MPMX19_03296 0.74 +0.5 643,849 - MPMX19_03296 0.74 -0.9 643,849 - MPMX19_03296 0.74 +0.6 643,849 - MPMX19_03296 0.74 -2.3 643,884 + MPMX19_03296 0.78 -0.3 643,884 + MPMX19_03296 0.78 -1.7 643,884 + MPMX19_03296 0.78 -0.1 643,884 + MPMX19_03296 0.78 -1.7 643,885 - MPMX19_03296 0.78 -0.0 644,224 + MPMX19_03297 0.19 -0.6 644,225 - MPMX19_03297 0.19 -2.3 644,225 - MPMX19_03297 0.19 -0.5 644,225 - MPMX19_03297 0.19 -0.8 644,304 - MPMX19_03297 0.30 -0.8 644,808 + +0.1 645,008 + MPMX19_03298 0.26 -0.4 645,008 + MPMX19_03298 0.26 -0.6 645,461 + MPMX19_03298 0.88 -1.9 645,461 + MPMX19_03298 0.88 +1.8 645,462 - MPMX19_03298 0.88 -1.3 645,644 + -0.0 645,644 + +1.1 645,645 - -1.4 645,645 - +1.0 645,645 - -2.1 645,645 - -1.0 645,645 - -2.3 645,645 - -0.4 645,645 - -1.2
Or see this region's nucleotide sequence