Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03296

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03294 and MPMX19_03295 are separated by 86 nucleotidesMPMX19_03295 and MPMX19_03296 are separated by 142 nucleotidesMPMX19_03296 and MPMX19_03297 overlap by 4 nucleotidesMPMX19_03297 and MPMX19_03298 are separated by 11 nucleotides MPMX19_03294: MPMX19_03294 - Homoserine kinase, at 641,175 to 642,212 _03294 MPMX19_03295: MPMX19_03295 - HTH-type transcriptional regulator McbR, at 642,299 to 643,006 _03295 MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093 _03296 MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803 _03297 MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546 _03298 Position (kb) 643 644 645Strain fitness (log2 ratio) -2 -1 0 1 2at 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.242 kb on + strandat 642.457 kb on - strand, within MPMX19_03295at 642.493 kb on - strand, within MPMX19_03295at 642.493 kb on - strand, within MPMX19_03295at 642.599 kb on - strand, within MPMX19_03295at 642.757 kb on - strand, within MPMX19_03295at 642.757 kb on - strand, within MPMX19_03295at 642.951 kb on + strandat 642.952 kb on - strandat 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on - strand, within MPMX19_03296at 643.453 kb on - strand, within MPMX19_03296at 643.453 kb on - strand, within MPMX19_03296at 643.611 kb on + strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.885 kb on - strand, within MPMX19_03296at 644.224 kb on + strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.304 kb on - strand, within MPMX19_03297at 644.808 kb on + strandat 645.008 kb on + strand, within MPMX19_03298at 645.008 kb on + strand, within MPMX19_03298

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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642,195 + -0.2
642,195 + -0.6
642,195 + -0.4
642,195 + -0.3
642,195 + -0.2
642,195 + -0.3
642,195 + -1.4
642,195 + -0.1
642,196 - +1.0
642,196 - +1.1
642,196 - -0.8
642,196 - -0.8
642,196 - +0.4
642,196 - -0.5
642,196 - -0.3
642,196 - -1.6
642,196 - +0.3
642,196 - -0.6
642,242 + -0.7
642,457 - MPMX19_03295 0.22 -0.0
642,493 - MPMX19_03295 0.27 -1.3
642,493 - MPMX19_03295 0.27 -1.0
642,599 - MPMX19_03295 0.42 -1.1
642,757 - MPMX19_03295 0.65 -0.6
642,757 - MPMX19_03295 0.65 -0.2
642,951 + -1.6
642,952 - -2.0
643,452 + MPMX19_03296 0.32 +0.1
643,452 + MPMX19_03296 0.32 -0.2
643,452 + MPMX19_03296 0.32 +1.3
643,452 + MPMX19_03296 0.32 -0.7
643,452 - MPMX19_03296 0.32 -0.9
643,453 - MPMX19_03296 0.32 -2.1
643,453 - MPMX19_03296 0.32 +0.7
643,611 + MPMX19_03296 0.49 +0.8
643,612 - MPMX19_03296 0.49 +1.0
643,612 - MPMX19_03296 0.49 +1.0
643,612 - MPMX19_03296 0.49 -1.0
643,653 + MPMX19_03296 0.53 +0.8
643,653 + MPMX19_03296 0.53 +0.7
643,653 + MPMX19_03296 0.53 +0.2
643,654 - MPMX19_03296 0.53 -0.6
643,654 - MPMX19_03296 0.53 -0.4
643,654 - MPMX19_03296 0.53 -0.1
643,848 + MPMX19_03296 0.74 -0.7
643,848 + MPMX19_03296 0.74 +2.2
643,848 + MPMX19_03296 0.74 +0.6
643,849 - MPMX19_03296 0.74 +0.3
643,849 - MPMX19_03296 0.74 +0.5
643,849 - MPMX19_03296 0.74 -0.9
643,849 - MPMX19_03296 0.74 +0.6
643,849 - MPMX19_03296 0.74 -2.3
643,884 + MPMX19_03296 0.78 -0.3
643,884 + MPMX19_03296 0.78 -1.7
643,884 + MPMX19_03296 0.78 -0.1
643,884 + MPMX19_03296 0.78 -1.7
643,885 - MPMX19_03296 0.78 -0.0
644,224 + MPMX19_03297 0.19 -0.6
644,225 - MPMX19_03297 0.19 -2.3
644,225 - MPMX19_03297 0.19 -0.5
644,225 - MPMX19_03297 0.19 -0.8
644,304 - MPMX19_03297 0.30 -0.8
644,808 + +0.1
645,008 + MPMX19_03298 0.26 -0.4
645,008 + MPMX19_03298 0.26 -0.6

Or see this region's nucleotide sequence