Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03294

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03293 and MPMX19_03294 are separated by 6 nucleotidesMPMX19_03294 and MPMX19_03295 are separated by 86 nucleotidesMPMX19_03295 and MPMX19_03296 are separated by 142 nucleotides MPMX19_03293: MPMX19_03293 - Taurine--pyruvate aminotransferase, at 639,852 to 641,168 _03293 MPMX19_03294: MPMX19_03294 - Homoserine kinase, at 641,175 to 642,212 _03294 MPMX19_03295: MPMX19_03295 - HTH-type transcriptional regulator McbR, at 642,299 to 643,006 _03295 MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093 _03296 Position (kb) 641 642 643Strain fitness (log2 ratio) -2 -1 0 1at 640.246 kb on + strand, within MPMX19_03293at 640.246 kb on + strand, within MPMX19_03293at 640.247 kb on - strand, within MPMX19_03293at 640.247 kb on - strand, within MPMX19_03293at 640.410 kb on + strand, within MPMX19_03293at 640.411 kb on - strand, within MPMX19_03293at 640.411 kb on - strand, within MPMX19_03293at 640.411 kb on - strand, within MPMX19_03293at 640.621 kb on + strand, within MPMX19_03293at 640.622 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.888 kb on + strand, within MPMX19_03293at 640.889 kb on - strand, within MPMX19_03293at 640.889 kb on - strand, within MPMX19_03293at 640.978 kb on + strand, within MPMX19_03293at 640.979 kb on - strand, within MPMX19_03293at 640.979 kb on - strand, within MPMX19_03293at 640.979 kb on - strand, within MPMX19_03293at 640.991 kb on - strand, within MPMX19_03293at 641.011 kb on + strand, within MPMX19_03293at 641.011 kb on + strand, within MPMX19_03293at 641.011 kb on + strand, within MPMX19_03293at 641.012 kb on - strand, within MPMX19_03293at 641.012 kb on - strand, within MPMX19_03293at 641.056 kb on + strandat 641.056 kb on + strandat 641.056 kb on + strandat 641.057 kb on - strandat 641.057 kb on - strandat 641.069 kb on - strandat 641.150 kb on - strandat 641.150 kb on - strandat 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.407 kb on + strand, within MPMX19_03294at 641.408 kb on - strand, within MPMX19_03294at 641.408 kb on - strand, within MPMX19_03294at 641.464 kb on + strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.767 kb on + strand, within MPMX19_03294at 641.768 kb on - strand, within MPMX19_03294at 641.768 kb on - strand, within MPMX19_03294at 641.866 kb on + strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.195 kb on + strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.196 kb on - strandat 642.242 kb on + strandat 642.457 kb on - strand, within MPMX19_03295at 642.493 kb on - strand, within MPMX19_03295at 642.493 kb on - strand, within MPMX19_03295at 642.599 kb on - strand, within MPMX19_03295at 642.757 kb on - strand, within MPMX19_03295at 642.757 kb on - strand, within MPMX19_03295at 642.951 kb on + strandat 642.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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640,246 + MPMX19_03293 0.30 +0.1
640,246 + MPMX19_03293 0.30 -1.0
640,247 - MPMX19_03293 0.30 -0.9
640,247 - MPMX19_03293 0.30 -0.6
640,410 + MPMX19_03293 0.42 +0.1
640,411 - MPMX19_03293 0.42 -1.2
640,411 - MPMX19_03293 0.42 -0.7
640,411 - MPMX19_03293 0.42 -1.3
640,621 + MPMX19_03293 0.58 +0.7
640,622 - MPMX19_03293 0.58 -0.8
640,721 - MPMX19_03293 0.66 -1.0
640,721 - MPMX19_03293 0.66 -1.0
640,721 - MPMX19_03293 0.66 +1.3
640,721 - MPMX19_03293 0.66 -0.2
640,721 - MPMX19_03293 0.66 +0.2
640,888 + MPMX19_03293 0.79 -0.3
640,889 - MPMX19_03293 0.79 -0.2
640,889 - MPMX19_03293 0.79 -1.0
640,978 + MPMX19_03293 0.85 -0.0
640,979 - MPMX19_03293 0.86 -1.7
640,979 - MPMX19_03293 0.86 -0.9
640,979 - MPMX19_03293 0.86 -1.4
640,991 - MPMX19_03293 0.86 +1.0
641,011 + MPMX19_03293 0.88 -1.5
641,011 + MPMX19_03293 0.88 -1.3
641,011 + MPMX19_03293 0.88 -0.8
641,012 - MPMX19_03293 0.88 +0.2
641,012 - MPMX19_03293 0.88 -0.7
641,056 + -1.7
641,056 + -1.8
641,056 + -0.8
641,057 - -0.8
641,057 - -1.6
641,069 - -0.1
641,150 - -0.5
641,150 - -1.8
641,281 + MPMX19_03294 0.10 -1.3
641,281 + MPMX19_03294 0.10 -1.2
641,281 + MPMX19_03294 0.10 -0.5
641,281 + MPMX19_03294 0.10 +0.5
641,281 + MPMX19_03294 0.10 -0.3
641,282 - MPMX19_03294 0.10 -1.2
641,282 - MPMX19_03294 0.10 -1.3
641,282 - MPMX19_03294 0.10 +0.1
641,282 - MPMX19_03294 0.10 +0.7
641,282 - MPMX19_03294 0.10 -1.5
641,282 - MPMX19_03294 0.10 -0.0
641,282 - MPMX19_03294 0.10 +0.4
641,282 - MPMX19_03294 0.10 -1.3
641,282 - MPMX19_03294 0.10 -0.9
641,282 - MPMX19_03294 0.10 -0.5
641,282 - MPMX19_03294 0.10 +0.4
641,407 + MPMX19_03294 0.22 +0.4
641,408 - MPMX19_03294 0.22 +0.2
641,408 - MPMX19_03294 0.22 -2.2
641,464 + MPMX19_03294 0.28 -0.6
641,465 - MPMX19_03294 0.28 +0.9
641,465 - MPMX19_03294 0.28 -0.6
641,465 - MPMX19_03294 0.28 -0.9
641,692 + MPMX19_03294 0.50 +0.2
641,692 + MPMX19_03294 0.50 -1.5
641,692 + MPMX19_03294 0.50 +1.1
641,692 + MPMX19_03294 0.50 +0.3
641,692 + MPMX19_03294 0.50 -1.4
641,693 - MPMX19_03294 0.50 -1.3
641,693 - MPMX19_03294 0.50 -0.4
641,693 - MPMX19_03294 0.50 -1.0
641,693 - MPMX19_03294 0.50 +0.2
641,693 - MPMX19_03294 0.50 -0.5
641,693 - MPMX19_03294 0.50 -0.0
641,693 - MPMX19_03294 0.50 -0.8
641,693 - MPMX19_03294 0.50 -0.4
641,693 - MPMX19_03294 0.50 +0.8
641,693 - MPMX19_03294 0.50 -1.2
641,767 + MPMX19_03294 0.57 +0.2
641,768 - MPMX19_03294 0.57 +0.5
641,768 - MPMX19_03294 0.57 -0.4
641,866 + MPMX19_03294 0.67 +0.3
641,867 - MPMX19_03294 0.67 -0.2
641,867 - MPMX19_03294 0.67 -1.2
641,867 - MPMX19_03294 0.67 +1.0
641,867 - MPMX19_03294 0.67 +0.5
642,052 + MPMX19_03294 0.84 +0.3
642,052 + MPMX19_03294 0.84 -0.7
642,052 + MPMX19_03294 0.84 +0.2
642,052 + MPMX19_03294 0.84 +0.4
642,053 - MPMX19_03294 0.85 -1.2
642,053 - MPMX19_03294 0.85 -1.5
642,053 - MPMX19_03294 0.85 -0.7
642,053 - MPMX19_03294 0.85 -0.3
642,053 - MPMX19_03294 0.85 -0.3
642,053 - MPMX19_03294 0.85 -0.2
642,053 - MPMX19_03294 0.85 +0.6
642,195 + -0.2
642,195 + -0.6
642,195 + -0.4
642,195 + -0.3
642,195 + -0.2
642,195 + -0.3
642,195 + -1.4
642,195 + -0.1
642,196 - +1.0
642,196 - +1.1
642,196 - -0.8
642,196 - -0.8
642,196 - +0.4
642,196 - -0.5
642,196 - -0.3
642,196 - -1.6
642,196 - +0.3
642,196 - -0.6
642,242 + -0.7
642,457 - MPMX19_03295 0.22 -0.0
642,493 - MPMX19_03295 0.27 -1.3
642,493 - MPMX19_03295 0.27 -1.0
642,599 - MPMX19_03295 0.42 -1.1
642,757 - MPMX19_03295 0.65 -0.6
642,757 - MPMX19_03295 0.65 -0.2
642,951 + -1.6
642,952 - -2.0

Or see this region's nucleotide sequence