Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03287

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03286 and MPMX19_03287 are separated by 10 nucleotidesMPMX19_03287 and MPMX19_03288 are separated by 17 nucleotides MPMX19_03286: MPMX19_03286 - Putrescine--pyruvate aminotransferase, at 632,225 to 633,604 _03286 MPMX19_03287: MPMX19_03287 - 6-aminohexanoate-cyclic-dimer hydrolase, at 633,615 to 635,042 _03287 MPMX19_03288: MPMX19_03288 - Spermidine/putrescine import ATP-binding protein PotA, at 635,060 to 636,169 _03288 Position (kb) 633 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 632.810 kb on + strand, within MPMX19_03286at 632.811 kb on - strand, within MPMX19_03286at 632.811 kb on - strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 633.131 kb on + strand, within MPMX19_03286at 633.131 kb on + strand, within MPMX19_03286at 633.131 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.834 kb on + strand, within MPMX19_03287at 633.835 kb on - strand, within MPMX19_03287at 633.852 kb on - strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.312 kb on - strand, within MPMX19_03287at 634.312 kb on - strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.516 kb on - strand, within MPMX19_03287at 634.516 kb on - strand, within MPMX19_03287at 634.527 kb on + strand, within MPMX19_03287at 634.527 kb on + strand, within MPMX19_03287at 634.674 kb on + strand, within MPMX19_03287at 634.675 kb on - strand, within MPMX19_03287at 634.737 kb on + strand, within MPMX19_03287at 634.738 kb on - strand, within MPMX19_03287at 634.738 kb on - strand, within MPMX19_03287at 635.053 kb on + strandat 635.053 kb on + strandat 635.053 kb on + strandat 635.053 kb on + strandat 635.054 kb on - strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.106 kb on - strandat 635.106 kb on - strandat 635.106 kb on - strandat 635.106 kb on - strandat 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.735 kb on + strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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632,810 + MPMX19_03286 0.42 -0.8
632,811 - MPMX19_03286 0.42 -0.0
632,811 - MPMX19_03286 0.42 +0.4
632,933 + MPMX19_03286 0.51 -0.3
632,933 + MPMX19_03286 0.51 -0.0
632,933 + MPMX19_03286 0.51 +0.1
632,933 + MPMX19_03286 0.51 -1.2
632,933 + MPMX19_03286 0.51 +1.3
632,933 + MPMX19_03286 0.51 -0.3
632,933 + MPMX19_03286 0.51 -0.7
632,934 - MPMX19_03286 0.51 -0.3
632,934 - MPMX19_03286 0.51 -2.3
632,934 - MPMX19_03286 0.51 -0.0
632,934 - MPMX19_03286 0.51 -0.6
632,934 - MPMX19_03286 0.51 -1.2
633,131 + MPMX19_03286 0.66 -0.3
633,131 + MPMX19_03286 0.66 +0.4
633,131 + MPMX19_03286 0.66 -1.3
633,188 + MPMX19_03286 0.70 +0.0
633,188 + MPMX19_03286 0.70 -0.8
633,188 + MPMX19_03286 0.70 -0.2
633,188 + MPMX19_03286 0.70 -0.2
633,189 - MPMX19_03286 0.70 -1.6
633,189 - MPMX19_03286 0.70 -1.5
633,189 - MPMX19_03286 0.70 -1.2
633,189 - MPMX19_03286 0.70 -0.2
633,189 - MPMX19_03286 0.70 -0.0
633,189 - MPMX19_03286 0.70 +0.4
633,239 + MPMX19_03286 0.73 -1.0
633,239 + MPMX19_03286 0.73 +0.4
633,239 + MPMX19_03286 0.73 -1.4
633,239 + MPMX19_03286 0.73 -0.6
633,239 + MPMX19_03286 0.73 -0.4
633,239 + MPMX19_03286 0.73 -1.7
633,240 - MPMX19_03286 0.74 -1.6
633,240 - MPMX19_03286 0.74 +0.1
633,240 - MPMX19_03286 0.74 +1.2
633,240 - MPMX19_03286 0.74 -1.5
633,503 + -0.8
633,503 + -0.0
633,503 + -1.2
633,503 + -3.2
633,503 + -0.0
633,503 + +0.1
633,504 - -0.0
633,504 - -1.2
633,504 - -0.7
633,504 - -0.0
633,504 - -1.6
633,504 - -0.1
633,504 - -1.1
633,504 - -0.8
633,621 + -1.3
633,621 + -1.3
633,621 + -0.9
633,621 + -1.0
633,621 + -2.1
633,621 + -0.0
633,621 + -1.6
633,621 + +0.1
633,621 + -1.6
633,621 + +0.8
633,622 - +0.3
633,622 - -0.5
633,622 - -0.3
633,622 - -2.5
633,622 - -0.1
633,622 - -1.1
633,622 - -0.4
633,622 - -1.3
633,622 - -1.2
633,834 + MPMX19_03287 0.15 +0.1
633,835 - MPMX19_03287 0.15 +0.8
633,852 - MPMX19_03287 0.17 -0.1
634,311 + MPMX19_03287 0.49 -1.7
634,311 + MPMX19_03287 0.49 -1.3
634,311 + MPMX19_03287 0.49 +0.4
634,312 - MPMX19_03287 0.49 +0.3
634,312 - MPMX19_03287 0.49 -1.6
634,515 + MPMX19_03287 0.63 -0.4
634,515 + MPMX19_03287 0.63 -1.0
634,515 + MPMX19_03287 0.63 -0.2
634,515 + MPMX19_03287 0.63 -0.6
634,515 + MPMX19_03287 0.63 -0.2
634,515 + MPMX19_03287 0.63 -0.7
634,516 - MPMX19_03287 0.63 -0.8
634,516 - MPMX19_03287 0.63 +0.2
634,527 + MPMX19_03287 0.64 -1.2
634,527 + MPMX19_03287 0.64 +0.4
634,674 + MPMX19_03287 0.74 +0.3
634,675 - MPMX19_03287 0.74 +0.7
634,737 + MPMX19_03287 0.79 +0.1
634,738 - MPMX19_03287 0.79 -1.5
634,738 - MPMX19_03287 0.79 +0.1
635,053 + -1.7
635,053 + -1.5
635,053 + -0.1
635,053 + -0.5
635,054 - -1.3
635,105 + -0.5
635,105 + -0.4
635,105 + -0.6
635,105 + +1.0
635,105 + +0.4
635,105 + -1.2
635,105 + -0.1
635,105 + +0.5
635,105 + -0.3
635,105 + -1.6
635,106 - -0.4
635,106 - -0.7
635,106 - -0.2
635,106 - -1.2
635,321 + MPMX19_03288 0.24 -1.4
635,321 + MPMX19_03288 0.24 -0.0
635,321 + MPMX19_03288 0.24 -0.4
635,321 + MPMX19_03288 0.24 -0.3
635,321 + MPMX19_03288 0.24 -0.8
635,321 + MPMX19_03288 0.24 -1.3
635,321 + MPMX19_03288 0.24 -0.2
635,321 + MPMX19_03288 0.24 +1.6
635,322 - MPMX19_03288 0.24 -0.2
635,322 - MPMX19_03288 0.24 -1.5
635,322 - MPMX19_03288 0.24 -0.1
635,322 - MPMX19_03288 0.24 -0.2
635,322 - MPMX19_03288 0.24 +1.7
635,322 - MPMX19_03288 0.24 +2.0
635,636 + MPMX19_03288 0.52 +0.1
635,636 + MPMX19_03288 0.52 -0.5
635,636 + MPMX19_03288 0.52 -0.1
635,636 + MPMX19_03288 0.52 +0.1
635,636 + MPMX19_03288 0.52 -1.0
635,636 + MPMX19_03288 0.52 -1.4
635,636 + MPMX19_03288 0.52 +1.0
635,636 + MPMX19_03288 0.52 -2.1
635,636 + MPMX19_03288 0.52 -0.6
635,636 + MPMX19_03288 0.52 +0.8
635,636 + MPMX19_03288 0.52 +0.1
635,636 + MPMX19_03288 0.52 -1.6
635,636 + MPMX19_03288 0.52 -1.3
635,637 - MPMX19_03288 0.52 -0.8
635,637 - MPMX19_03288 0.52 -1.2
635,637 - MPMX19_03288 0.52 -0.3
635,637 - MPMX19_03288 0.52 -2.2
635,637 - MPMX19_03288 0.52 -0.1
635,637 - MPMX19_03288 0.52 +0.6
635,637 - MPMX19_03288 0.52 -1.7
635,637 - MPMX19_03288 0.52 +0.2
635,637 - MPMX19_03288 0.52 +1.2
635,637 - MPMX19_03288 0.52 -0.3
635,637 - MPMX19_03288 0.52 -1.5
635,637 - MPMX19_03288 0.52 +0.4
635,637 - MPMX19_03288 0.52 +0.6
635,637 - MPMX19_03288 0.52 -0.0
635,637 - MPMX19_03288 0.52 -0.7
635,637 - MPMX19_03288 0.52 +0.1
635,637 - MPMX19_03288 0.52 -1.3
635,735 + MPMX19_03288 0.61 +1.0
635,736 - MPMX19_03288 0.61 +0.1
635,736 - MPMX19_03288 0.61 -0.1
635,736 - MPMX19_03288 0.61 -0.3
635,736 - MPMX19_03288 0.61 +1.0
636,008 + MPMX19_03288 0.85 +0.3
636,008 + MPMX19_03288 0.85 -0.6
636,008 + MPMX19_03288 0.85 +0.0
636,008 + MPMX19_03288 0.85 +0.4
636,008 + MPMX19_03288 0.85 +0.6
636,009 - MPMX19_03288 0.85 -0.8
636,009 - MPMX19_03288 0.85 -0.1
636,009 - MPMX19_03288 0.85 +0.6
636,009 - MPMX19_03288 0.85 -0.2
636,009 - MPMX19_03288 0.85 -1.7
636,009 - MPMX19_03288 0.85 -0.2

Or see this region's nucleotide sequence