Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03279 and MPMX19_03280 are separated by 29 nucleotides MPMX19_03280 and MPMX19_03281 overlap by 4 nucleotides MPMX19_03281 and MPMX19_03282 are separated by 39 nucleotides MPMX19_03282 and MPMX19_03283 are separated by 101 nucleotides
MPMX19_03279: MPMX19_03279 - hypothetical protein, at 624,971 to 626,230
_03279
MPMX19_03280: MPMX19_03280 - Inner membrane ABC transporter permease protein YdcV, at 626,260 to 627,075
_03280
MPMX19_03281: MPMX19_03281 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 627,072 to 627,818
_03281
MPMX19_03282: MPMX19_03282 - HTH-type transcriptional regulator McbR, at 627,858 to 628,541
_03282
MPMX19_03283: MPMX19_03283 - Glutamate-1-semialdehyde 2,1-aminomutase, at 628,643 to 629,956
_03283
Position (kb) 627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.099 kb on + strand, within MPMX19_03279 at 626.099 kb on + strand, within MPMX19_03279 at 626.100 kb on - strand, within MPMX19_03279 at 626.100 kb on - strand, within MPMX19_03279 at 626.100 kb on - strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.103 kb on - strand, within MPMX19_03279 at 626.103 kb on - strand, within MPMX19_03279 at 626.103 kb on - strand, within MPMX19_03279 at 626.177 kb on + strand at 626.177 kb on + strand at 626.300 kb on - strand at 626.300 kb on - strand at 626.389 kb on + strand, within MPMX19_03280 at 626.390 kb on - strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.666 kb on - strand, within MPMX19_03280 at 626.666 kb on - strand, within MPMX19_03280 at 626.770 kb on + strand, within MPMX19_03280 at 626.770 kb on + strand, within MPMX19_03280 at 626.770 kb on + strand, within MPMX19_03280 at 626.771 kb on - strand, within MPMX19_03280 at 627.501 kb on + strand, within MPMX19_03281 at 627.501 kb on + strand, within MPMX19_03281 at 627.501 kb on + strand, within MPMX19_03281 at 627.502 kb on - strand, within MPMX19_03281 at 627.502 kb on - strand, within MPMX19_03281 at 627.738 kb on + strand, within MPMX19_03281 at 627.738 kb on + strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.791 kb on + strand at 627.792 kb on - strand at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.013 kb on - strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.300 kb on + strand, within MPMX19_03282 at 628.300 kb on + strand, within MPMX19_03282 at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.622 kb on + strand at 628.622 kb on + strand at 628.622 kb on + strand at 628.623 kb on - strand at 628.623 kb on - strand at 628.624 kb on + strand at 628.624 kb on + strand at 628.624 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.630 kb on - strand at 628.630 kb on - strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.744 kb on - strand at 628.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 626,087 + MPMX19_03279 0.89 -0.3 626,087 + MPMX19_03279 0.89 -1.2 626,087 + MPMX19_03279 0.89 -1.2 626,087 + MPMX19_03279 0.89 -0.0 626,087 + MPMX19_03279 0.89 -2.1 626,087 + MPMX19_03279 0.89 -1.6 626,087 + MPMX19_03279 0.89 +2.4 626,087 + MPMX19_03279 0.89 +0.4 626,087 + MPMX19_03279 0.89 -0.7 626,088 - MPMX19_03279 0.89 -0.9 626,088 - MPMX19_03279 0.89 +2.0 626,088 - MPMX19_03279 0.89 +0.7 626,088 - MPMX19_03279 0.89 -0.7 626,088 - MPMX19_03279 0.89 -0.2 626,088 - MPMX19_03279 0.89 -0.5 626,088 - MPMX19_03279 0.89 -1.4 626,088 - MPMX19_03279 0.89 -1.2 626,099 + MPMX19_03279 0.90 -0.6 626,099 + MPMX19_03279 0.90 -2.3 626,100 - MPMX19_03279 0.90 +0.2 626,100 - MPMX19_03279 0.90 +0.3 626,100 - MPMX19_03279 0.90 +0.4 626,102 + MPMX19_03279 0.90 -0.0 626,102 + MPMX19_03279 0.90 -0.2 626,102 + MPMX19_03279 0.90 +1.3 626,102 + MPMX19_03279 0.90 -2.2 626,103 - MPMX19_03279 0.90 -0.4 626,103 - MPMX19_03279 0.90 -0.1 626,103 - MPMX19_03279 0.90 -0.6 626,177 + -0.0 626,177 + -0.2 626,300 - -1.5 626,300 - -1.0 626,389 + MPMX19_03280 0.16 -1.2 626,390 - MPMX19_03280 0.16 -0.3 626,419 + MPMX19_03280 0.19 -0.2 626,419 + MPMX19_03280 0.19 +0.2 626,419 + MPMX19_03280 0.19 -1.0 626,419 + MPMX19_03280 0.19 -0.9 626,420 - MPMX19_03280 0.20 -0.6 626,420 - MPMX19_03280 0.20 +1.0 626,420 - MPMX19_03280 0.20 -1.6 626,420 - MPMX19_03280 0.20 -0.0 626,629 + MPMX19_03280 0.45 -1.7 626,629 + MPMX19_03280 0.45 -0.0 626,629 + MPMX19_03280 0.45 -1.4 626,629 + MPMX19_03280 0.45 -0.1 626,629 + MPMX19_03280 0.45 -0.7 626,629 + MPMX19_03280 0.45 -0.7 626,629 + MPMX19_03280 0.45 +0.5 626,629 + MPMX19_03280 0.45 +0.2 626,630 - MPMX19_03280 0.45 -1.0 626,630 - MPMX19_03280 0.45 -0.5 626,630 - MPMX19_03280 0.45 -0.6 626,630 - MPMX19_03280 0.45 -1.3 626,630 - MPMX19_03280 0.45 +0.4 626,630 - MPMX19_03280 0.45 -2.2 626,665 + MPMX19_03280 0.50 +0.3 626,665 + MPMX19_03280 0.50 +0.2 626,665 + MPMX19_03280 0.50 -0.5 626,665 + MPMX19_03280 0.50 -1.7 626,665 + MPMX19_03280 0.50 -0.1 626,666 - MPMX19_03280 0.50 -0.6 626,666 - MPMX19_03280 0.50 -3.3 626,770 + MPMX19_03280 0.62 +0.1 626,770 + MPMX19_03280 0.62 -0.1 626,770 + MPMX19_03280 0.62 -1.2 626,771 - MPMX19_03280 0.63 -0.2 627,501 + MPMX19_03281 0.57 +1.3 627,501 + MPMX19_03281 0.57 -0.8 627,501 + MPMX19_03281 0.57 -0.3 627,502 - MPMX19_03281 0.58 -1.5 627,502 - MPMX19_03281 0.58 +0.4 627,738 + MPMX19_03281 0.89 +0.2 627,738 + MPMX19_03281 0.89 -0.6 627,739 - MPMX19_03281 0.89 -0.3 627,739 - MPMX19_03281 0.89 -0.6 627,739 - MPMX19_03281 0.89 -0.6 627,791 + -1.5 627,792 - -1.5 628,012 + MPMX19_03282 0.23 +2.0 628,012 + MPMX19_03282 0.23 -1.8 628,012 + MPMX19_03282 0.23 -0.6 628,012 + MPMX19_03282 0.23 -0.2 628,012 + MPMX19_03282 0.23 -0.2 628,013 - MPMX19_03282 0.23 -0.6 628,036 + MPMX19_03282 0.26 +0.9 628,036 + MPMX19_03282 0.26 -0.3 628,036 + MPMX19_03282 0.26 -2.2 628,037 - MPMX19_03282 0.26 +0.4 628,037 - MPMX19_03282 0.26 -1.5 628,037 - MPMX19_03282 0.26 -0.6 628,149 + MPMX19_03282 0.43 -0.3 628,149 + MPMX19_03282 0.43 -0.7 628,149 + MPMX19_03282 0.43 +0.4 628,149 + MPMX19_03282 0.43 -0.6 628,150 - MPMX19_03282 0.43 +1.0 628,150 - MPMX19_03282 0.43 +0.4 628,150 - MPMX19_03282 0.43 -0.2 628,150 - MPMX19_03282 0.43 -0.6 628,150 - MPMX19_03282 0.43 -1.0 628,300 + MPMX19_03282 0.65 +0.3 628,300 + MPMX19_03282 0.65 -0.8 628,495 + -1.8 628,495 + -1.1 628,495 + -0.9 628,495 + -0.8 628,495 + -0.3 628,495 + +1.3 628,495 + +0.2 628,495 + -1.4 628,495 + -0.2 628,496 - -0.8 628,496 - -0.7 628,496 - -0.5 628,496 - +1.6 628,496 - -0.5 628,496 - +0.7 628,496 - -1.0 628,496 - -0.8 628,496 - -2.2 628,496 - -0.6 628,622 + -0.6 628,622 + -1.0 628,622 + -1.8 628,623 - -0.0 628,623 - -0.1 628,624 + -1.0 628,624 + +0.1 628,624 + +0.8 628,629 + -1.5 628,629 + -1.7 628,629 + -0.3 628,629 + -1.0 628,629 + -0.3 628,630 - -0.4 628,630 - -0.4 628,743 + -1.7 628,743 + -0.2 628,743 + -1.1 628,743 + -1.6 628,743 + -0.1 628,744 - -0.2 628,744 - -0.2
Or see this region's nucleotide sequence