Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03265

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03264 and MPMX19_03265 overlap by 4 nucleotidesMPMX19_03265 and MPMX19_03266 are separated by 75 nucleotidesMPMX19_03266 and MPMX19_03267 are separated by 47 nucleotides MPMX19_03264: MPMX19_03264 - hypothetical protein, at 606,053 to 608,230 _03264 MPMX19_03265: MPMX19_03265 - Spermidine/putrescine import ATP-binding protein PotA, at 608,227 to 609,399 _03265 MPMX19_03266: MPMX19_03266 - Inositol-1-monophosphatase, at 609,475 to 610,251 _03266 MPMX19_03267: MPMX19_03267 - Periplasmic AppA protein, at 610,299 to 611,651 _03267 Position (kb) 608 609 610Strain fitness (log2 ratio) -2 -1 0 1at 607.322 kb on + strand, within MPMX19_03264at 607.322 kb on + strand, within MPMX19_03264at 607.322 kb on + strand, within MPMX19_03264at 607.323 kb on - strand, within MPMX19_03264at 607.436 kb on + strand, within MPMX19_03264at 607.437 kb on - strand, within MPMX19_03264at 607.437 kb on - strand, within MPMX19_03264at 607.437 kb on - strand, within MPMX19_03264at 607.506 kb on - strand, within MPMX19_03264at 607.506 kb on - strand, within MPMX19_03264at 607.643 kb on + strand, within MPMX19_03264at 607.644 kb on - strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.974 kb on - strand, within MPMX19_03264at 607.974 kb on - strand, within MPMX19_03264at 608.033 kb on + strandat 608.033 kb on + strandat 608.033 kb on + strandat 608.033 kb on + strandat 608.034 kb on - strandat 608.034 kb on - strandat 608.034 kb on - strandat 608.034 kb on - strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.081 kb on + strandat 608.082 kb on - strandat 608.099 kb on + strandat 608.099 kb on + strandat 608.099 kb on + strandat 608.100 kb on - strandat 608.100 kb on - strandat 608.345 kb on - strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.600 kb on - strand, within MPMX19_03265at 608.600 kb on - strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.971 kb on + strand, within MPMX19_03265at 608.972 kb on - strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.262 kb on + strand, within MPMX19_03265at 609.262 kb on + strand, within MPMX19_03265at 609.262 kb on + strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.067 kb on - strand, within MPMX19_03266at 610.067 kb on - strand, within MPMX19_03266

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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607,322 + MPMX19_03264 0.58 -1.5
607,322 + MPMX19_03264 0.58 -0.6
607,322 + MPMX19_03264 0.58 -0.7
607,323 - MPMX19_03264 0.58 +0.1
607,436 + MPMX19_03264 0.63 -2.2
607,437 - MPMX19_03264 0.64 +0.3
607,437 - MPMX19_03264 0.64 +0.4
607,437 - MPMX19_03264 0.64 -0.9
607,506 - MPMX19_03264 0.67 -1.0
607,506 - MPMX19_03264 0.67 -0.6
607,643 + MPMX19_03264 0.73 -0.2
607,644 - MPMX19_03264 0.73 -1.2
607,739 + MPMX19_03264 0.77 +0.3
607,739 + MPMX19_03264 0.77 -0.8
607,739 + MPMX19_03264 0.77 +1.0
607,739 + MPMX19_03264 0.77 -1.9
607,739 + MPMX19_03264 0.77 -0.5
607,739 + MPMX19_03264 0.77 -0.5
607,974 - MPMX19_03264 0.88 -0.2
607,974 - MPMX19_03264 0.88 -1.9
608,033 + -0.9
608,033 + -0.3
608,033 + -0.1
608,033 + -1.0
608,034 - -0.6
608,034 - -1.4
608,034 - +0.5
608,034 - +0.0
608,051 + -0.6
608,051 + -0.2
608,051 + +0.1
608,051 + -0.4
608,051 + -1.3
608,051 + +0.0
608,052 - -0.2
608,052 - -2.5
608,052 - -0.2
608,052 - +0.0
608,052 - +1.0
608,052 - +0.0
608,081 + -0.2
608,082 - -1.2
608,099 + -1.3
608,099 + +0.4
608,099 + -2.2
608,100 - -0.6
608,100 - -1.8
608,345 - MPMX19_03265 0.10 +0.7
608,557 + MPMX19_03265 0.28 -0.6
608,557 + MPMX19_03265 0.28 -1.2
608,557 + MPMX19_03265 0.28 +0.2
608,557 + MPMX19_03265 0.28 +1.7
608,557 + MPMX19_03265 0.28 -2.0
608,558 - MPMX19_03265 0.28 +0.5
608,558 - MPMX19_03265 0.28 +0.1
608,558 - MPMX19_03265 0.28 +0.5
608,558 - MPMX19_03265 0.28 +0.5
608,558 - MPMX19_03265 0.28 -0.8
608,600 - MPMX19_03265 0.32 +0.2
608,600 - MPMX19_03265 0.32 -1.5
608,660 + MPMX19_03265 0.37 -1.0
608,660 + MPMX19_03265 0.37 -1.7
608,660 + MPMX19_03265 0.37 -0.3
608,660 + MPMX19_03265 0.37 -1.0
608,660 + MPMX19_03265 0.37 -0.8
608,661 - MPMX19_03265 0.37 -0.2
608,661 - MPMX19_03265 0.37 -1.6
608,661 - MPMX19_03265 0.37 +0.0
608,872 + MPMX19_03265 0.55 -0.5
608,872 + MPMX19_03265 0.55 -0.8
608,872 + MPMX19_03265 0.55 -0.3
608,872 + MPMX19_03265 0.55 -0.9
608,872 + MPMX19_03265 0.55 +1.2
608,872 + MPMX19_03265 0.55 +0.8
608,872 + MPMX19_03265 0.55 -1.5
608,873 - MPMX19_03265 0.55 +0.3
608,873 - MPMX19_03265 0.55 -0.5
608,873 - MPMX19_03265 0.55 -0.9
608,873 - MPMX19_03265 0.55 +0.7
608,971 + MPMX19_03265 0.63 -1.0
608,972 - MPMX19_03265 0.64 +0.2
609,241 + MPMX19_03265 0.86 +0.2
609,241 + MPMX19_03265 0.86 -1.6
609,241 + MPMX19_03265 0.86 +1.1
609,241 + MPMX19_03265 0.86 -0.2
609,241 + MPMX19_03265 0.86 -1.3
609,241 + MPMX19_03265 0.86 +0.0
609,242 - MPMX19_03265 0.87 -1.3
609,242 - MPMX19_03265 0.87 -1.0
609,242 - MPMX19_03265 0.87 -0.8
609,242 - MPMX19_03265 0.87 +0.2
609,262 + MPMX19_03265 0.88 -0.1
609,262 + MPMX19_03265 0.88 -1.2
609,262 + MPMX19_03265 0.88 -1.2
609,263 - MPMX19_03265 0.88 +0.1
609,263 - MPMX19_03265 0.88 -0.9
609,263 - MPMX19_03265 0.88 -0.8
609,263 - MPMX19_03265 0.88 -0.2
609,263 - MPMX19_03265 0.88 +0.1
609,263 - MPMX19_03265 0.88 +0.3
609,263 - MPMX19_03265 0.88 -0.8
609,263 - MPMX19_03265 0.88 +1.2
609,263 - MPMX19_03265 0.88 +0.3
609,263 - MPMX19_03265 0.88 +0.4
609,263 - MPMX19_03265 0.88 +0.2
609,739 + MPMX19_03266 0.34 +1.5
609,739 + MPMX19_03266 0.34 +1.2
609,739 + MPMX19_03266 0.34 -0.8
609,739 + MPMX19_03266 0.34 -0.6
609,739 + MPMX19_03266 0.34 -0.9
609,739 + MPMX19_03266 0.34 +1.6
609,740 - MPMX19_03266 0.34 -1.3
609,740 - MPMX19_03266 0.34 -1.4
609,740 - MPMX19_03266 0.34 +0.3
609,740 - MPMX19_03266 0.34 -0.1
609,740 - MPMX19_03266 0.34 -1.2
609,740 - MPMX19_03266 0.34 +0.0
609,740 - MPMX19_03266 0.34 -0.3
609,740 - MPMX19_03266 0.34 -0.3
609,740 - MPMX19_03266 0.34 -0.3
609,740 - MPMX19_03266 0.34 -0.6
609,740 - MPMX19_03266 0.34 +0.4
609,740 - MPMX19_03266 0.34 -0.7
609,740 - MPMX19_03266 0.34 +0.4
609,814 + MPMX19_03266 0.44 -0.3
609,814 + MPMX19_03266 0.44 -0.3
609,814 + MPMX19_03266 0.44 -0.2
609,814 + MPMX19_03266 0.44 -0.3
609,814 + MPMX19_03266 0.44 -0.3
609,814 + MPMX19_03266 0.44 -1.6
609,814 + MPMX19_03266 0.44 -0.5
609,814 + MPMX19_03266 0.44 +0.2
609,814 + MPMX19_03266 0.44 -1.0
609,814 + MPMX19_03266 0.44 -0.7
609,814 + MPMX19_03266 0.44 +0.3
609,815 - MPMX19_03266 0.44 +0.0
609,815 - MPMX19_03266 0.44 +0.1
609,815 - MPMX19_03266 0.44 +1.7
609,815 - MPMX19_03266 0.44 -1.1
609,815 - MPMX19_03266 0.44 -1.5
609,815 - MPMX19_03266 0.44 -1.3
609,815 - MPMX19_03266 0.44 +0.6
609,815 - MPMX19_03266 0.44 -0.8
610,066 + MPMX19_03266 0.76 -0.8
610,066 + MPMX19_03266 0.76 -0.9
610,066 + MPMX19_03266 0.76 +1.3
610,067 - MPMX19_03266 0.76 +0.7
610,067 - MPMX19_03266 0.76 -1.9

Or see this region's nucleotide sequence