Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03262

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03261 and MPMX19_03262 are separated by 185 nucleotidesMPMX19_03262 and MPMX19_03263 are separated by 443 nucleotides MPMX19_03261: MPMX19_03261 - 4-hydroxyproline 2-epimerase 2, at 602,354 to 603,352 _03261 MPMX19_03262: MPMX19_03262 - putative HTH-type transcriptional repressor ExuR, at 603,538 to 604,521 _03262 MPMX19_03263: MPMX19_03263 - hypothetical protein, at 604,965 to 606,041 _03263 Position (kb) 603 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.845 kb on + strand, within MPMX19_03261at 602.846 kb on - strand, within MPMX19_03261at 602.852 kb on + strand, within MPMX19_03261at 602.852 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.938 kb on - strand, within MPMX19_03261at 603.077 kb on + strand, within MPMX19_03261at 603.077 kb on + strand, within MPMX19_03261at 603.078 kb on - strand, within MPMX19_03261at 603.078 kb on - strand, within MPMX19_03261at 603.245 kb on + strand, within MPMX19_03261at 603.246 kb on - strand, within MPMX19_03261at 603.303 kb on + strandat 603.304 kb on - strandat 603.394 kb on - strandat 603.857 kb on + strand, within MPMX19_03262at 603.858 kb on - strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.984 kb on - strand, within MPMX19_03262at 603.984 kb on - strand, within MPMX19_03262at 604.383 kb on - strand, within MPMX19_03262at 604.574 kb on + strandat 604.709 kb on + strandat 604.710 kb on - strandat 605.023 kb on + strandat 605.024 kb on - strandat 605.103 kb on + strand, within MPMX19_03263at 605.104 kb on - strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.337 kb on + strand, within MPMX19_03263at 605.337 kb on + strand, within MPMX19_03263at 605.338 kb on - strand, within MPMX19_03263at 605.338 kb on - strand, within MPMX19_03263at 605.338 kb on - strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.415 kb on + strand, within MPMX19_03263at 605.415 kb on + strand, within MPMX19_03263at 605.415 kb on + strand, within MPMX19_03263at 605.416 kb on - strand, within MPMX19_03263at 605.416 kb on - strand, within MPMX19_03263at 605.417 kb on + strand, within MPMX19_03263at 605.417 kb on + strand, within MPMX19_03263at 605.417 kb on + strand, within MPMX19_03263at 605.418 kb on - strand, within MPMX19_03263at 605.418 kb on - strand, within MPMX19_03263at 605.418 kb on - strand, within MPMX19_03263

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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602,549 + MPMX19_03261 0.20 +0.2
602,549 + MPMX19_03261 0.20 -1.1
602,549 + MPMX19_03261 0.20 -2.5
602,549 + MPMX19_03261 0.20 -0.7
602,549 + MPMX19_03261 0.20 -1.0
602,550 - MPMX19_03261 0.20 -0.5
602,550 - MPMX19_03261 0.20 +0.1
602,550 - MPMX19_03261 0.20 -1.0
602,732 + MPMX19_03261 0.38 -2.2
602,732 + MPMX19_03261 0.38 -0.8
602,732 + MPMX19_03261 0.38 -0.1
602,733 - MPMX19_03261 0.38 +0.4
602,733 - MPMX19_03261 0.38 +0.9
602,733 - MPMX19_03261 0.38 -1.7
602,786 + MPMX19_03261 0.43 -1.4
602,786 + MPMX19_03261 0.43 -2.8
602,786 + MPMX19_03261 0.43 -1.1
602,787 - MPMX19_03261 0.43 -0.0
602,787 - MPMX19_03261 0.43 -0.8
602,787 - MPMX19_03261 0.43 -0.2
602,787 - MPMX19_03261 0.43 -1.8
602,845 + MPMX19_03261 0.49 -1.5
602,846 - MPMX19_03261 0.49 -2.1
602,852 + MPMX19_03261 0.50 -1.8
602,852 + MPMX19_03261 0.50 -0.6
602,864 + MPMX19_03261 0.51 -2.0
602,864 + MPMX19_03261 0.51 +0.0
602,864 + MPMX19_03261 0.51 +1.0
602,864 + MPMX19_03261 0.51 +0.3
602,865 - MPMX19_03261 0.51 -1.0
602,865 - MPMX19_03261 0.51 +0.7
602,865 - MPMX19_03261 0.51 +0.0
602,865 - MPMX19_03261 0.51 -1.5
602,867 + MPMX19_03261 0.51 -0.4
602,867 + MPMX19_03261 0.51 -0.2
602,867 + MPMX19_03261 0.51 +0.2
602,867 + MPMX19_03261 0.51 -1.3
602,867 + MPMX19_03261 0.51 +0.3
602,868 - MPMX19_03261 0.51 -1.4
602,868 - MPMX19_03261 0.51 +0.0
602,868 - MPMX19_03261 0.51 -1.1
602,868 - MPMX19_03261 0.51 -0.3
602,938 - MPMX19_03261 0.58 -1.2
603,077 + MPMX19_03261 0.72 +1.0
603,077 + MPMX19_03261 0.72 -2.0
603,078 - MPMX19_03261 0.72 +0.2
603,078 - MPMX19_03261 0.72 -1.0
603,245 + MPMX19_03261 0.89 +0.0
603,246 - MPMX19_03261 0.89 +1.0
603,303 + -1.8
603,304 - -0.5
603,394 - +0.6
603,857 + MPMX19_03262 0.32 +0.8
603,858 - MPMX19_03262 0.33 -0.5
603,983 + MPMX19_03262 0.45 -0.6
603,983 + MPMX19_03262 0.45 +1.3
603,983 + MPMX19_03262 0.45 -1.3
603,983 + MPMX19_03262 0.45 +0.3
603,984 - MPMX19_03262 0.45 -1.0
603,984 - MPMX19_03262 0.45 +1.1
604,383 - MPMX19_03262 0.86 -0.2
604,574 + +0.6
604,709 + -1.3
604,710 - -0.9
605,023 + -0.3
605,024 - -0.6
605,103 + MPMX19_03263 0.13 -1.4
605,104 - MPMX19_03263 0.13 +0.3
605,205 + MPMX19_03263 0.22 -1.5
605,205 + MPMX19_03263 0.22 -0.8
605,205 + MPMX19_03263 0.22 -0.3
605,205 + MPMX19_03263 0.22 +0.7
605,205 + MPMX19_03263 0.22 -1.5
605,206 - MPMX19_03263 0.22 -0.3
605,206 - MPMX19_03263 0.22 +0.3
605,206 - MPMX19_03263 0.22 -0.5
605,206 - MPMX19_03263 0.22 -1.3
605,206 - MPMX19_03263 0.22 +0.9
605,206 - MPMX19_03263 0.22 -0.2
605,206 - MPMX19_03263 0.22 -0.1
605,206 - MPMX19_03263 0.22 -1.1
605,206 - MPMX19_03263 0.22 -2.4
605,206 - MPMX19_03263 0.22 -0.1
605,310 + MPMX19_03263 0.32 -1.9
605,310 + MPMX19_03263 0.32 +1.3
605,310 + MPMX19_03263 0.32 -1.6
605,310 + MPMX19_03263 0.32 -0.5
605,310 + MPMX19_03263 0.32 -0.2
605,310 + MPMX19_03263 0.32 +0.0
605,310 + MPMX19_03263 0.32 -0.6
605,310 + MPMX19_03263 0.32 -0.9
605,311 - MPMX19_03263 0.32 -1.5
605,311 - MPMX19_03263 0.32 +1.2
605,311 - MPMX19_03263 0.32 +0.3
605,311 - MPMX19_03263 0.32 +0.1
605,311 - MPMX19_03263 0.32 +0.1
605,311 - MPMX19_03263 0.32 -0.3
605,311 - MPMX19_03263 0.32 +0.7
605,311 - MPMX19_03263 0.32 -0.6
605,311 - MPMX19_03263 0.32 -0.3
605,337 + MPMX19_03263 0.35 +0.2
605,337 + MPMX19_03263 0.35 -0.2
605,338 - MPMX19_03263 0.35 -2.8
605,338 - MPMX19_03263 0.35 -2.3
605,338 - MPMX19_03263 0.35 +0.5
605,391 + MPMX19_03263 0.40 -0.1
605,391 + MPMX19_03263 0.40 -1.2
605,391 + MPMX19_03263 0.40 -2.5
605,391 + MPMX19_03263 0.40 +2.0
605,391 + MPMX19_03263 0.40 -0.2
605,391 + MPMX19_03263 0.40 -0.2
605,391 + MPMX19_03263 0.40 +0.4
605,391 + MPMX19_03263 0.40 +0.9
605,391 + MPMX19_03263 0.40 -1.0
605,391 + MPMX19_03263 0.40 -0.8
605,391 + MPMX19_03263 0.40 -0.3
605,391 + MPMX19_03263 0.40 +2.0
605,392 - MPMX19_03263 0.40 +0.0
605,392 - MPMX19_03263 0.40 +0.8
605,392 - MPMX19_03263 0.40 -0.3
605,392 - MPMX19_03263 0.40 -1.3
605,392 - MPMX19_03263 0.40 -0.5
605,392 - MPMX19_03263 0.40 -1.5
605,392 - MPMX19_03263 0.40 -0.5
605,392 - MPMX19_03263 0.40 -2.1
605,392 - MPMX19_03263 0.40 +1.0
605,392 - MPMX19_03263 0.40 -0.4
605,392 - MPMX19_03263 0.40 -1.2
605,392 - MPMX19_03263 0.40 +0.1
605,415 + MPMX19_03263 0.42 -0.4
605,415 + MPMX19_03263 0.42 +0.5
605,415 + MPMX19_03263 0.42 -1.9
605,416 - MPMX19_03263 0.42 -0.5
605,416 - MPMX19_03263 0.42 +0.0
605,417 + MPMX19_03263 0.42 -0.6
605,417 + MPMX19_03263 0.42 -0.2
605,417 + MPMX19_03263 0.42 -1.3
605,418 - MPMX19_03263 0.42 +0.3
605,418 - MPMX19_03263 0.42 -0.7
605,418 - MPMX19_03263 0.42 -0.3

Or see this region's nucleotide sequence