Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03254

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03252 and MPMX19_03253 are separated by 2 nucleotidesMPMX19_03253 and MPMX19_03254 overlap by 8 nucleotidesMPMX19_03254 and MPMX19_03255 overlap by 4 nucleotides MPMX19_03252: MPMX19_03252 - hypothetical protein, at 592,815 to 593,522 _03252 MPMX19_03253: MPMX19_03253 - 4-hydroxy-tetrahydrodipicolinate synthase, at 593,525 to 594,436 _03253 MPMX19_03254: MPMX19_03254 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 594,429 to 595,946 _03254 MPMX19_03255: MPMX19_03255 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC, at 595,943 to 597,304 _03255 Position (kb) 594 595 596Strain fitness (log2 ratio) -2 -1 0 1 2at 593.540 kb on - strandat 593.615 kb on + strandat 593.616 kb on - strandat 593.616 kb on - strandat 593.616 kb on - strandat 593.669 kb on + strand, within MPMX19_03253at 593.669 kb on + strand, within MPMX19_03253at 593.670 kb on - strand, within MPMX19_03253at 593.711 kb on + strand, within MPMX19_03253at 593.711 kb on + strand, within MPMX19_03253at 593.711 kb on + strand, within MPMX19_03253at 593.789 kb on + strand, within MPMX19_03253at 593.790 kb on - strand, within MPMX19_03253at 593.846 kb on + strand, within MPMX19_03253at 593.847 kb on - strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.925 kb on - strand, within MPMX19_03253at 593.925 kb on - strand, within MPMX19_03253at 593.930 kb on + strand, within MPMX19_03253at 593.931 kb on - strand, within MPMX19_03253at 593.931 kb on - strand, within MPMX19_03253at 593.931 kb on - strand, within MPMX19_03253at 593.966 kb on + strand, within MPMX19_03253at 593.966 kb on + strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.287 kb on + strand, within MPMX19_03253at 594.288 kb on - strand, within MPMX19_03253at 594.288 kb on - strand, within MPMX19_03253at 594.428 kb on + strandat 594.428 kb on + strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.456 kb on + strandat 594.571 kb on + strandat 594.571 kb on + strandat 594.571 kb on + strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.613 kb on - strand, within MPMX19_03254at 594.613 kb on - strand, within MPMX19_03254at 594.613 kb on - strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.847 kb on - strand, within MPMX19_03254at 594.847 kb on - strand, within MPMX19_03254at 594.847 kb on - strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.498 kb on - strand, within MPMX19_03254at 595.719 kb on + strand, within MPMX19_03254at 595.719 kb on + strand, within MPMX19_03254at 595.720 kb on - strand, within MPMX19_03254at 595.720 kb on - strand, within MPMX19_03254at 595.720 kb on - strand, within MPMX19_03254at 595.881 kb on + strandat 595.881 kb on + strandat 595.881 kb on + strandat 595.881 kb on + strandat 595.881 kb on + strandat 595.881 kb on + strandat 595.882 kb on - strandat 595.882 kb on - strandat 595.882 kb on - strandat 595.882 kb on - strandat 595.882 kb on - strandat 595.883 kb on + strandat 596.243 kb on + strand, within MPMX19_03255at 596.243 kb on + strand, within MPMX19_03255at 596.243 kb on + strand, within MPMX19_03255at 596.243 kb on + strand, within MPMX19_03255at 596.244 kb on - strand, within MPMX19_03255at 596.330 kb on + strand, within MPMX19_03255at 596.331 kb on - strand, within MPMX19_03255at 596.495 kb on + strand, within MPMX19_03255at 596.495 kb on + strand, within MPMX19_03255at 596.495 kb on + strand, within MPMX19_03255at 596.496 kb on - strand, within MPMX19_03255at 596.498 kb on + strand, within MPMX19_03255at 596.498 kb on + strand, within MPMX19_03255at 596.499 kb on - strand, within MPMX19_03255at 596.499 kb on - strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.514 kb on - strand, within MPMX19_03255at 596.514 kb on - strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.551 kb on + strand, within MPMX19_03255at 596.594 kb on + strand, within MPMX19_03255at 596.594 kb on + strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.789 kb on + strand, within MPMX19_03255at 596.790 kb on - strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.913 kb on - strand, within MPMX19_03255

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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593,540 - -1.6
593,615 + +0.7
593,616 - -2.2
593,616 - -1.8
593,616 - -0.2
593,669 + MPMX19_03253 0.16 -0.9
593,669 + MPMX19_03253 0.16 -1.2
593,670 - MPMX19_03253 0.16 -0.8
593,711 + MPMX19_03253 0.20 +0.2
593,711 + MPMX19_03253 0.20 +0.2
593,711 + MPMX19_03253 0.20 +0.4
593,789 + MPMX19_03253 0.29 -0.8
593,790 - MPMX19_03253 0.29 -0.5
593,846 + MPMX19_03253 0.35 -0.6
593,847 - MPMX19_03253 0.35 +0.6
593,924 + MPMX19_03253 0.44 -0.2
593,924 + MPMX19_03253 0.44 -0.4
593,924 + MPMX19_03253 0.44 -1.4
593,924 + MPMX19_03253 0.44 -0.4
593,924 + MPMX19_03253 0.44 +1.0
593,924 + MPMX19_03253 0.44 +0.1
593,924 + MPMX19_03253 0.44 -0.8
593,924 + MPMX19_03253 0.44 -0.6
593,925 - MPMX19_03253 0.44 -1.2
593,925 - MPMX19_03253 0.44 -1.0
593,930 + MPMX19_03253 0.44 +2.0
593,931 - MPMX19_03253 0.45 +1.0
593,931 - MPMX19_03253 0.45 -1.2
593,931 - MPMX19_03253 0.45 -1.0
593,966 + MPMX19_03253 0.48 -0.1
593,966 + MPMX19_03253 0.48 -0.2
593,967 - MPMX19_03253 0.48 +0.3
593,967 - MPMX19_03253 0.48 -1.8
593,967 - MPMX19_03253 0.48 +0.0
593,967 - MPMX19_03253 0.48 -0.9
593,967 - MPMX19_03253 0.48 +0.1
594,176 + MPMX19_03253 0.71 -0.9
594,176 + MPMX19_03253 0.71 -0.1
594,176 + MPMX19_03253 0.71 -0.4
594,176 + MPMX19_03253 0.71 +0.3
594,176 + MPMX19_03253 0.71 -0.6
594,177 - MPMX19_03253 0.71 -1.6
594,177 - MPMX19_03253 0.71 +0.1
594,177 - MPMX19_03253 0.71 -0.5
594,177 - MPMX19_03253 0.71 +0.7
594,287 + MPMX19_03253 0.84 -1.4
594,288 - MPMX19_03253 0.84 -0.4
594,288 - MPMX19_03253 0.84 +0.0
594,428 + +0.4
594,428 + -1.2
594,429 - +1.3
594,429 - +0.3
594,429 - +0.5
594,429 - -1.5
594,429 - -0.6
594,429 - +2.3
594,429 - -2.2
594,456 + -1.8
594,571 + -0.1
594,571 + -0.8
594,571 + -0.4
594,572 - +0.3
594,572 - +1.0
594,572 - +1.3
594,572 - -0.5
594,572 - -2.4
594,572 - +1.0
594,572 - -1.0
594,612 + MPMX19_03254 0.12 -0.2
594,612 + MPMX19_03254 0.12 +0.6
594,612 + MPMX19_03254 0.12 -1.2
594,612 + MPMX19_03254 0.12 -1.0
594,612 + MPMX19_03254 0.12 -1.7
594,613 - MPMX19_03254 0.12 +0.7
594,613 - MPMX19_03254 0.12 -2.2
594,613 - MPMX19_03254 0.12 -0.6
594,846 + MPMX19_03254 0.27 -0.8
594,846 + MPMX19_03254 0.27 +0.0
594,846 + MPMX19_03254 0.27 +1.6
594,846 + MPMX19_03254 0.27 +0.7
594,847 - MPMX19_03254 0.28 -0.8
594,847 - MPMX19_03254 0.28 -0.2
594,847 - MPMX19_03254 0.28 -1.2
595,133 + MPMX19_03254 0.46 -0.3
595,133 + MPMX19_03254 0.46 +0.4
595,133 + MPMX19_03254 0.46 -0.9
595,133 + MPMX19_03254 0.46 -1.6
595,133 + MPMX19_03254 0.46 -1.5
595,133 + MPMX19_03254 0.46 -1.5
595,133 + MPMX19_03254 0.46 +1.4
595,133 + MPMX19_03254 0.46 -0.8
595,133 + MPMX19_03254 0.46 -0.9
595,133 + MPMX19_03254 0.46 -0.6
595,133 + MPMX19_03254 0.46 +0.3
595,133 + MPMX19_03254 0.46 -1.0
595,133 + MPMX19_03254 0.46 -1.2
595,133 + MPMX19_03254 0.46 -1.3
595,133 + MPMX19_03254 0.46 +0.4
595,133 + MPMX19_03254 0.46 -0.2
595,134 - MPMX19_03254 0.46 -1.5
595,134 - MPMX19_03254 0.46 +1.0
595,134 - MPMX19_03254 0.46 -0.1
595,134 - MPMX19_03254 0.46 +0.9
595,134 - MPMX19_03254 0.46 -1.3
595,134 - MPMX19_03254 0.46 -0.5
595,134 - MPMX19_03254 0.46 -1.3
595,134 - MPMX19_03254 0.46 -0.5
595,498 - MPMX19_03254 0.70 +0.0
595,719 + MPMX19_03254 0.85 -0.9
595,719 + MPMX19_03254 0.85 +0.1
595,720 - MPMX19_03254 0.85 +0.0
595,720 - MPMX19_03254 0.85 +1.0
595,720 - MPMX19_03254 0.85 -1.0
595,881 + -1.2
595,881 + +0.4
595,881 + -0.4
595,881 + -1.2
595,881 + +1.0
595,881 + -0.7
595,882 - -2.6
595,882 - -0.1
595,882 - -1.3
595,882 - -1.2
595,882 - -0.4
595,883 + +0.4
596,243 + MPMX19_03255 0.22 -0.6
596,243 + MPMX19_03255 0.22 -1.0
596,243 + MPMX19_03255 0.22 -0.1
596,243 + MPMX19_03255 0.22 +0.3
596,244 - MPMX19_03255 0.22 -1.9
596,330 + MPMX19_03255 0.28 -1.0
596,331 - MPMX19_03255 0.28 +0.8
596,495 + MPMX19_03255 0.41 -1.5
596,495 + MPMX19_03255 0.41 -0.2
596,495 + MPMX19_03255 0.41 +0.2
596,496 - MPMX19_03255 0.41 -1.0
596,498 + MPMX19_03255 0.41 -0.7
596,498 + MPMX19_03255 0.41 -0.1
596,499 - MPMX19_03255 0.41 -0.4
596,499 - MPMX19_03255 0.41 +1.0
596,513 + MPMX19_03255 0.42 -0.6
596,513 + MPMX19_03255 0.42 -1.2
596,513 + MPMX19_03255 0.42 -0.0
596,513 + MPMX19_03255 0.42 -0.5
596,513 + MPMX19_03255 0.42 -1.0
596,513 + MPMX19_03255 0.42 +0.5
596,513 + MPMX19_03255 0.42 -0.2
596,513 + MPMX19_03255 0.42 -1.0
596,513 + MPMX19_03255 0.42 -1.0
596,513 + MPMX19_03255 0.42 +0.4
596,514 - MPMX19_03255 0.42 -0.6
596,514 - MPMX19_03255 0.42 +0.7
596,515 + MPMX19_03255 0.42 -1.2
596,515 + MPMX19_03255 0.42 +1.0
596,515 + MPMX19_03255 0.42 -0.7
596,515 + MPMX19_03255 0.42 -1.0
596,515 + MPMX19_03255 0.42 -0.2
596,549 + MPMX19_03255 0.44 -0.5
596,549 + MPMX19_03255 0.44 -0.8
596,549 + MPMX19_03255 0.44 +0.6
596,549 + MPMX19_03255 0.44 -1.7
596,549 + MPMX19_03255 0.44 -0.1
596,549 + MPMX19_03255 0.44 -1.7
596,549 + MPMX19_03255 0.44 +0.5
596,549 + MPMX19_03255 0.44 -0.4
596,550 - MPMX19_03255 0.45 -0.8
596,550 - MPMX19_03255 0.45 +0.2
596,550 - MPMX19_03255 0.45 +0.6
596,550 - MPMX19_03255 0.45 -1.3
596,550 - MPMX19_03255 0.45 -1.8
596,550 - MPMX19_03255 0.45 +0.4
596,550 - MPMX19_03255 0.45 -1.3
596,550 - MPMX19_03255 0.45 +0.0
596,550 - MPMX19_03255 0.45 -0.1
596,550 - MPMX19_03255 0.45 -1.6
596,551 + MPMX19_03255 0.45 +0.4
596,594 + MPMX19_03255 0.48 -0.4
596,594 + MPMX19_03255 0.48 -0.5
596,595 - MPMX19_03255 0.48 -0.8
596,595 - MPMX19_03255 0.48 -0.3
596,595 - MPMX19_03255 0.48 -1.2
596,595 - MPMX19_03255 0.48 -0.1
596,595 - MPMX19_03255 0.48 -1.7
596,595 - MPMX19_03255 0.48 -0.2
596,704 + MPMX19_03255 0.56 -0.2
596,704 + MPMX19_03255 0.56 -1.0
596,704 + MPMX19_03255 0.56 +0.6
596,704 + MPMX19_03255 0.56 -0.5
596,705 - MPMX19_03255 0.56 -0.6
596,705 - MPMX19_03255 0.56 -2.2
596,705 - MPMX19_03255 0.56 -0.3
596,705 - MPMX19_03255 0.56 -1.0
596,705 - MPMX19_03255 0.56 -0.7
596,753 + MPMX19_03255 0.59 +0.1
596,753 + MPMX19_03255 0.59 -0.6
596,753 + MPMX19_03255 0.59 -1.8
596,753 + MPMX19_03255 0.59 -0.1
596,753 + MPMX19_03255 0.59 +0.4
596,753 + MPMX19_03255 0.59 -0.5
596,753 + MPMX19_03255 0.59 -1.7
596,753 + MPMX19_03255 0.59 -0.1
596,753 + MPMX19_03255 0.59 -0.6
596,753 + MPMX19_03255 0.59 -0.8
596,754 - MPMX19_03255 0.60 -0.5
596,754 - MPMX19_03255 0.60 -0.5
596,754 - MPMX19_03255 0.60 +0.2
596,754 - MPMX19_03255 0.60 -0.3
596,754 - MPMX19_03255 0.60 +0.7
596,754 - MPMX19_03255 0.60 -0.1
596,754 - MPMX19_03255 0.60 +0.3
596,754 - MPMX19_03255 0.60 -1.6
596,754 - MPMX19_03255 0.60 -1.8
596,789 + MPMX19_03255 0.62 -1.5
596,790 - MPMX19_03255 0.62 -1.4
596,912 + MPMX19_03255 0.71 +0.4
596,912 + MPMX19_03255 0.71 -0.4
596,912 + MPMX19_03255 0.71 +0.5
596,912 + MPMX19_03255 0.71 +0.3
596,913 - MPMX19_03255 0.71 -0.6

Or see this region's nucleotide sequence