Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03247 and MPMX19_03248 are separated by 88 nucleotides MPMX19_03248 and MPMX19_03249 are separated by 6 nucleotides
MPMX19_03247: MPMX19_03247 - putative RNA polymerase sigma factor FecI, at 587,695 to 588,228
_03247
MPMX19_03248: MPMX19_03248 - 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component, at 588,317 to 589,402
_03248
MPMX19_03249: MPMX19_03249 - Carnitine monooxygenase oxygenase subunit, at 589,409 to 590,644
_03249
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.334 kb on + strand at 587.334 kb on + strand at 587.334 kb on + strand at 587.334 kb on + strand at 587.334 kb on + strand at 587.335 kb on - strand at 587.492 kb on + strand at 587.772 kb on - strand, within MPMX19_03247 at 587.881 kb on + strand, within MPMX19_03247 at 587.881 kb on + strand, within MPMX19_03247 at 587.881 kb on + strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.901 kb on + strand, within MPMX19_03247 at 587.921 kb on - strand, within MPMX19_03247 at 587.921 kb on - strand, within MPMX19_03247 at 587.978 kb on + strand, within MPMX19_03247 at 588.011 kb on + strand, within MPMX19_03247 at 588.012 kb on - strand, within MPMX19_03247 at 588.012 kb on - strand, within MPMX19_03247 at 588.012 kb on - strand, within MPMX19_03247 at 588.079 kb on + strand, within MPMX19_03247 at 588.079 kb on + strand, within MPMX19_03247 at 588.080 kb on - strand, within MPMX19_03247 at 588.080 kb on - strand, within MPMX19_03247 at 588.296 kb on + strand at 588.297 kb on - strand at 588.297 kb on - strand at 588.297 kb on - strand at 588.302 kb on + strand at 588.302 kb on + strand at 588.302 kb on + strand at 588.302 kb on + strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.660 kb on + strand, within MPMX19_03248 at 588.660 kb on + strand, within MPMX19_03248 at 588.661 kb on - strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.736 kb on - strand, within MPMX19_03248 at 588.736 kb on - strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.524 kb on + strand at 589.524 kb on + strand at 589.524 kb on + strand at 589.525 kb on - strand at 589.525 kb on - strand at 589.620 kb on + strand, within MPMX19_03249 at 589.620 kb on + strand, within MPMX19_03249 at 589.621 kb on - strand, within MPMX19_03249 at 589.667 kb on + strand, within MPMX19_03249 at 589.667 kb on + strand, within MPMX19_03249 at 589.668 kb on - strand, within MPMX19_03249 at 589.668 kb on - strand, within MPMX19_03249 at 589.750 kb on - strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.142 kb on + strand, within MPMX19_03249 at 590.142 kb on + strand, within MPMX19_03249 at 590.143 kb on - strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 587,334 + +0.2 587,334 + +0.0 587,334 + +0.2 587,334 + -1.9 587,334 + +0.0 587,335 - +0.0 587,492 + +2.3 587,772 - MPMX19_03247 0.14 -1.1 587,881 + MPMX19_03247 0.35 -0.4 587,881 + MPMX19_03247 0.35 +0.0 587,881 + MPMX19_03247 0.35 -1.5 587,882 - MPMX19_03247 0.35 -0.6 587,882 - MPMX19_03247 0.35 -0.8 587,882 - MPMX19_03247 0.35 -0.8 587,882 - MPMX19_03247 0.35 -0.8 587,901 + MPMX19_03247 0.39 -0.1 587,921 - MPMX19_03247 0.42 +0.4 587,921 - MPMX19_03247 0.42 +0.1 587,978 + MPMX19_03247 0.53 -2.1 588,011 + MPMX19_03247 0.59 +1.0 588,012 - MPMX19_03247 0.59 +0.2 588,012 - MPMX19_03247 0.59 -0.4 588,012 - MPMX19_03247 0.59 -1.7 588,079 + MPMX19_03247 0.72 -1.9 588,079 + MPMX19_03247 0.72 +1.3 588,080 - MPMX19_03247 0.72 +0.9 588,080 - MPMX19_03247 0.72 -0.3 588,296 + +0.8 588,297 - +1.0 588,297 - +0.4 588,297 - -1.0 588,302 + +0.0 588,302 + +0.6 588,302 + -0.2 588,302 + -0.5 588,303 - -1.0 588,303 - +0.1 588,303 - -1.3 588,303 - -0.7 588,303 - +0.0 588,303 - -2.2 588,303 - +0.6 588,369 + -1.0 588,369 + +0.2 588,369 + -1.1 588,369 + -2.1 588,369 + +0.8 588,369 + -0.7 588,370 - -1.0 588,370 - +1.4 588,370 - +0.4 588,370 - -2.2 588,370 - -0.7 588,370 - +0.4 588,370 - -0.3 588,660 + MPMX19_03248 0.32 -0.8 588,660 + MPMX19_03248 0.32 -0.3 588,661 - MPMX19_03248 0.32 -0.1 588,735 + MPMX19_03248 0.38 -0.7 588,735 + MPMX19_03248 0.38 -1.5 588,735 + MPMX19_03248 0.38 -1.3 588,736 - MPMX19_03248 0.39 -0.2 588,736 - MPMX19_03248 0.39 -1.4 588,753 + MPMX19_03248 0.40 +1.0 588,753 + MPMX19_03248 0.40 +0.1 588,753 + MPMX19_03248 0.40 +0.4 588,754 - MPMX19_03248 0.40 -0.3 588,754 - MPMX19_03248 0.40 -1.8 588,754 - MPMX19_03248 0.40 -1.6 588,754 - MPMX19_03248 0.40 +0.8 588,754 - MPMX19_03248 0.40 -0.1 588,754 - MPMX19_03248 0.40 -0.7 588,969 + MPMX19_03248 0.60 -0.8 588,969 + MPMX19_03248 0.60 -0.7 588,969 + MPMX19_03248 0.60 -1.5 588,969 + MPMX19_03248 0.60 -1.2 588,969 + MPMX19_03248 0.60 -2.5 588,969 + MPMX19_03248 0.60 -0.9 588,969 + MPMX19_03248 0.60 -1.3 588,969 + MPMX19_03248 0.60 -0.1 588,969 + MPMX19_03248 0.60 +0.3 588,969 + MPMX19_03248 0.60 -1.1 588,969 + MPMX19_03248 0.60 -0.2 588,969 + MPMX19_03248 0.60 +0.4 588,969 + MPMX19_03248 0.60 -0.5 588,970 - MPMX19_03248 0.60 -1.1 588,970 - MPMX19_03248 0.60 +0.6 588,970 - MPMX19_03248 0.60 +0.5 588,970 - MPMX19_03248 0.60 -0.9 588,970 - MPMX19_03248 0.60 -0.1 588,970 - MPMX19_03248 0.60 +0.0 588,970 - MPMX19_03248 0.60 -0.3 588,970 - MPMX19_03248 0.60 -0.6 588,970 - MPMX19_03248 0.60 -1.0 588,970 - MPMX19_03248 0.60 +0.2 588,970 - MPMX19_03248 0.60 -1.2 588,970 - MPMX19_03248 0.60 -0.3 589,023 + MPMX19_03248 0.65 -1.3 589,023 + MPMX19_03248 0.65 +0.7 589,023 + MPMX19_03248 0.65 -1.0 589,023 + MPMX19_03248 0.65 -1.8 589,023 + MPMX19_03248 0.65 +0.0 589,023 + MPMX19_03248 0.65 -1.3 589,023 + MPMX19_03248 0.65 +0.1 589,023 + MPMX19_03248 0.65 -0.1 589,023 + MPMX19_03248 0.65 -1.0 589,023 + MPMX19_03248 0.65 -0.5 589,023 + MPMX19_03248 0.65 -1.5 589,023 + MPMX19_03248 0.65 -0.7 589,024 - MPMX19_03248 0.65 -1.3 589,024 - MPMX19_03248 0.65 -0.6 589,024 - MPMX19_03248 0.65 -1.5 589,024 - MPMX19_03248 0.65 -1.3 589,024 - MPMX19_03248 0.65 -0.1 589,024 - MPMX19_03248 0.65 -1.0 589,024 - MPMX19_03248 0.65 -0.1 589,024 - MPMX19_03248 0.65 +0.7 589,024 - MPMX19_03248 0.65 +1.0 589,024 - MPMX19_03248 0.65 +1.2 589,024 - MPMX19_03248 0.65 -0.1 589,024 - MPMX19_03248 0.65 +1.0 589,194 + MPMX19_03248 0.81 +0.0 589,194 + MPMX19_03248 0.81 -0.3 589,194 + MPMX19_03248 0.81 +0.3 589,194 + MPMX19_03248 0.81 +0.3 589,194 + MPMX19_03248 0.81 -0.3 589,194 + MPMX19_03248 0.81 -0.6 589,194 + MPMX19_03248 0.81 -0.3 589,194 + MPMX19_03248 0.81 +2.3 589,194 + MPMX19_03248 0.81 -0.5 589,194 + MPMX19_03248 0.81 -2.4 589,194 + MPMX19_03248 0.81 -0.3 589,194 + MPMX19_03248 0.81 -0.2 589,194 + MPMX19_03248 0.81 -0.3 589,194 + MPMX19_03248 0.81 -0.3 589,194 + MPMX19_03248 0.81 -2.0 589,195 - MPMX19_03248 0.81 +0.0 589,195 - MPMX19_03248 0.81 +0.4 589,195 - MPMX19_03248 0.81 +0.4 589,195 - MPMX19_03248 0.81 -2.3 589,195 - MPMX19_03248 0.81 -0.2 589,410 + -0.3 589,410 + -0.2 589,410 + +0.1 589,410 + +0.7 589,410 + +0.4 589,410 + -0.6 589,410 + -2.4 589,410 + -0.3 589,410 + +1.0 589,410 + +2.0 589,411 - +0.4 589,411 - -1.0 589,411 - -0.9 589,411 - -1.3 589,411 - -2.4 589,411 - -0.4 589,464 + -1.6 589,464 + -1.5 589,464 + -1.2 589,464 + +0.2 589,465 - -0.1 589,465 - -0.1 589,465 - -0.9 589,465 - -0.3 589,465 - -0.8 589,524 + -1.1 589,524 + -1.0 589,524 + -0.6 589,525 - -1.3 589,525 - -1.8 589,620 + MPMX19_03249 0.17 +0.1 589,620 + MPMX19_03249 0.17 -0.6 589,621 - MPMX19_03249 0.17 -2.1 589,667 + MPMX19_03249 0.21 -1.2 589,667 + MPMX19_03249 0.21 -0.2 589,668 - MPMX19_03249 0.21 +0.6 589,668 - MPMX19_03249 0.21 +0.7 589,750 - MPMX19_03249 0.28 +2.0 589,833 + MPMX19_03249 0.34 +0.5 589,833 + MPMX19_03249 0.34 -1.3 589,833 + MPMX19_03249 0.34 -0.4 589,833 + MPMX19_03249 0.34 +0.4 589,833 + MPMX19_03249 0.34 -0.3 589,833 + MPMX19_03249 0.34 -0.6 589,833 + MPMX19_03249 0.34 +0.1 589,833 + MPMX19_03249 0.34 -1.1 589,833 + MPMX19_03249 0.34 +0.4 589,833 + MPMX19_03249 0.34 +0.3 589,833 + MPMX19_03249 0.34 +1.0 589,834 - MPMX19_03249 0.34 -1.2 589,834 - MPMX19_03249 0.34 +0.4 589,834 - MPMX19_03249 0.34 -1.2 589,834 - MPMX19_03249 0.34 +0.1 589,834 - MPMX19_03249 0.34 -0.8 589,834 - MPMX19_03249 0.34 -0.8 589,834 - MPMX19_03249 0.34 -0.9 589,834 - MPMX19_03249 0.34 -0.5 589,834 - MPMX19_03249 0.34 -0.6 589,834 - MPMX19_03249 0.34 -0.7 589,834 - MPMX19_03249 0.34 -0.8 589,834 - MPMX19_03249 0.34 -1.5 590,040 + MPMX19_03249 0.51 +0.2 590,040 + MPMX19_03249 0.51 -0.6 590,040 + MPMX19_03249 0.51 -1.0 590,041 - MPMX19_03249 0.51 -0.0 590,041 - MPMX19_03249 0.51 -1.0 590,041 - MPMX19_03249 0.51 -1.0 590,041 - MPMX19_03249 0.51 +0.0 590,041 - MPMX19_03249 0.51 -0.5 590,041 - MPMX19_03249 0.51 -0.5 590,041 - MPMX19_03249 0.51 -0.4 590,041 - MPMX19_03249 0.51 -0.3 590,142 + MPMX19_03249 0.59 +0.8 590,142 + MPMX19_03249 0.59 -0.2 590,143 - MPMX19_03249 0.59 -0.5 590,202 + MPMX19_03249 0.64 +0.3 590,202 + MPMX19_03249 0.64 -1.2 590,202 + MPMX19_03249 0.64 +0.2 590,202 + MPMX19_03249 0.64 +0.0 590,202 + MPMX19_03249 0.64 -0.0 590,202 + MPMX19_03249 0.64 -1.5 590,202 + MPMX19_03249 0.64 -0.8 590,202 + MPMX19_03249 0.64 -0.1 590,203 - MPMX19_03249 0.64 +0.2 590,203 - MPMX19_03249 0.64 -0.6 590,203 - MPMX19_03249 0.64 -1.3 590,203 - MPMX19_03249 0.64 -1.6 590,310 + MPMX19_03249 0.73 -0.5 590,310 + MPMX19_03249 0.73 +0.0 590,310 + MPMX19_03249 0.73 -0.2 590,310 + MPMX19_03249 0.73 -0.2 590,310 + MPMX19_03249 0.73 -1.0 590,310 + MPMX19_03249 0.73 -2.4 590,310 + MPMX19_03249 0.73 -0.2 590,310 + MPMX19_03249 0.73 +0.0 590,310 + MPMX19_03249 0.73 -2.3 590,311 - MPMX19_03249 0.73 +0.6 590,311 - MPMX19_03249 0.73 +0.3 590,311 - MPMX19_03249 0.73 -0.9 590,311 - MPMX19_03249 0.73 +1.2 590,311 - MPMX19_03249 0.73 -1.3
Or see this region's nucleotide sequence