Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03242 and MPMX19_03243 are separated by 368 nucleotides MPMX19_03243 and MPMX19_03244 are separated by 204 nucleotides
MPMX19_03242: MPMX19_03242 - ABC transporter ATP-binding/permease protein YojI, at 562,812 to 564,467
_03242
MPMX19_03243: MPMX19_03243 - hypothetical protein, at 564,836 to 565,849
_03243
MPMX19_03244: MPMX19_03244 - D-alanine--D-alanyl carrier protein ligase, at 566,054 to 583,993
_03244
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.023 kb on - strand, within MPMX19_03242 at 564.311 kb on + strand at 564.311 kb on + strand at 564.312 kb on - strand at 564.312 kb on - strand at 564.549 kb on + strand at 564.550 kb on - strand at 564.550 kb on - strand at 564.740 kb on - strand at 564.740 kb on - strand at 564.748 kb on + strand at 564.749 kb on - strand at 564.749 kb on - strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 565.303 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.748 kb on + strand at 565.748 kb on + strand at 565.748 kb on + strand at 565.748 kb on + strand at 565.748 kb on + strand at 565.749 kb on - strand at 565.749 kb on - strand at 565.749 kb on - strand at 565.749 kb on - strand at 565.906 kb on + strand at 565.933 kb on + strand at 566.272 kb on + strand at 566.272 kb on + strand at 566.273 kb on - strand at 566.273 kb on - strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.658 kb on - strand at 566.658 kb on - strand at 566.658 kb on - strand at 566.712 kb on - strand at 566.712 kb on - strand at 566.720 kb on + strand at 566.720 kb on + strand at 566.720 kb on + strand at 566.720 kb on + strand at 566.721 kb on - strand at 566.777 kb on + strand at 566.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 563,950 + MPMX19_03242 0.69 -1.0 563,950 + MPMX19_03242 0.69 -1.6 563,950 + MPMX19_03242 0.69 -1.9 563,950 + MPMX19_03242 0.69 -3.6 563,950 + MPMX19_03242 0.69 +1.3 563,950 + MPMX19_03242 0.69 -0.2 563,950 + MPMX19_03242 0.69 +0.9 563,950 + MPMX19_03242 0.69 -0.8 563,951 - MPMX19_03242 0.69 +1.0 563,951 - MPMX19_03242 0.69 +0.6 563,951 - MPMX19_03242 0.69 -0.9 563,951 - MPMX19_03242 0.69 +0.5 563,951 - MPMX19_03242 0.69 +0.7 563,951 - MPMX19_03242 0.69 -1.2 563,951 - MPMX19_03242 0.69 -0.6 564,022 + MPMX19_03242 0.73 +0.2 564,022 + MPMX19_03242 0.73 +0.7 564,022 + MPMX19_03242 0.73 -2.0 564,023 - MPMX19_03242 0.73 -1.6 564,311 + +0.1 564,311 + +1.3 564,312 - +1.0 564,312 - -0.4 564,549 + +0.1 564,550 - -0.2 564,550 - +2.0 564,740 - +1.2 564,740 - -1.1 564,748 + +0.2 564,749 - +0.0 564,749 - -0.6 564,797 + +0.0 564,797 + +0.2 564,797 + -0.9 564,797 + +0.4 564,797 + -0.8 564,797 + +1.0 564,797 + -0.7 564,797 + +0.4 564,797 + +1.2 564,797 + -0.1 564,798 - -0.7 564,798 - -0.4 564,798 - -0.0 564,798 - -1.5 564,798 - +1.0 564,799 + -0.2 564,799 + +0.0 564,799 + -0.5 564,799 + +1.2 564,799 + -0.1 564,799 + +1.0 564,799 + -0.4 564,799 + -1.1 564,799 + -0.3 564,799 + -0.6 564,799 + -0.4 564,799 + -2.0 564,800 - +0.0 564,800 - -1.0 564,800 - -1.6 564,800 - -0.2 564,800 - -0.5 564,800 - +0.4 564,800 - +1.1 564,836 - -0.1 564,836 - -0.8 564,836 - -0.6 565,303 + MPMX19_03243 0.46 -0.4 565,304 + MPMX19_03243 0.46 -0.1 565,304 + MPMX19_03243 0.46 +1.3 565,304 + MPMX19_03243 0.46 +0.8 565,304 + MPMX19_03243 0.46 -0.0 565,304 + MPMX19_03243 0.46 -0.9 565,304 + MPMX19_03243 0.46 -1.0 565,304 + MPMX19_03243 0.46 -0.9 565,304 + MPMX19_03243 0.46 -1.0 565,304 + MPMX19_03243 0.46 -2.0 565,304 + MPMX19_03243 0.46 -0.4 565,305 - MPMX19_03243 0.46 -1.7 565,305 - MPMX19_03243 0.46 +0.0 565,305 - MPMX19_03243 0.46 -0.8 565,305 - MPMX19_03243 0.46 -1.6 565,305 - MPMX19_03243 0.46 -0.6 565,305 - MPMX19_03243 0.46 -0.2 565,305 - MPMX19_03243 0.46 -0.9 565,305 - MPMX19_03243 0.46 -1.0 565,355 + MPMX19_03243 0.51 -0.6 565,355 + MPMX19_03243 0.51 -0.7 565,355 + MPMX19_03243 0.51 +0.6 565,356 - MPMX19_03243 0.51 -0.1 565,356 - MPMX19_03243 0.51 +0.0 565,685 + MPMX19_03243 0.84 +1.0 565,685 + MPMX19_03243 0.84 -0.2 565,685 + MPMX19_03243 0.84 +0.1 565,685 + MPMX19_03243 0.84 +1.8 565,685 + MPMX19_03243 0.84 -1.2 565,685 + MPMX19_03243 0.84 -0.3 565,685 + MPMX19_03243 0.84 -1.0 565,685 + MPMX19_03243 0.84 -0.2 565,686 - MPMX19_03243 0.84 +1.0 565,686 - MPMX19_03243 0.84 -1.0 565,686 - MPMX19_03243 0.84 -0.5 565,686 - MPMX19_03243 0.84 -0.7 565,748 + -0.4 565,748 + +0.3 565,748 + -0.3 565,748 + -2.0 565,748 + -1.1 565,749 - -0.3 565,749 - -1.3 565,749 - +1.8 565,749 - -0.8 565,906 + -0.3 565,933 + -1.2 566,272 + +0.4 566,272 + +0.3 566,273 - -0.5 566,273 - -0.0 566,657 + -0.3 566,657 + -0.6 566,657 + -1.2 566,657 + -1.1 566,657 + -1.0 566,658 - -1.2 566,658 - -0.9 566,658 - +0.7 566,712 - -0.2 566,712 - +1.1 566,720 + +1.0 566,720 + -1.3 566,720 + -0.1 566,720 + -1.7 566,721 - +0.2 566,777 + -0.3 566,778 - -1.0
Or see this region's nucleotide sequence