Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03233

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03231 and MPMX19_03232 are separated by 19 nucleotidesMPMX19_03232 and MPMX19_03233 are separated by 4 nucleotidesMPMX19_03233 and MPMX19_03234 overlap by 1 nucleotides MPMX19_03231: MPMX19_03231 - Ferrichrome outer membrane transporter/phage receptor, at 531,941 to 534,208 _03231 MPMX19_03232: MPMX19_03232 - Iron(3+)-hydroxamate-binding protein FhuD, at 534,228 to 535,151 _03232 MPMX19_03233: MPMX19_03233 - Iron(3+)-hydroxamate import system permease protein FhuB, at 535,156 to 537,150 _03233 MPMX19_03234: MPMX19_03234 - hypothetical protein, at 537,150 to 538,247 _03234 Position (kb) 535 536 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1at 534.162 kb on - strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.207 kb on - strandat 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.598 kb on - strand, within MPMX19_03232at 534.598 kb on - strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.859 kb on - strand, within MPMX19_03232at 534.918 kb on + strand, within MPMX19_03232at 534.919 kb on - strand, within MPMX19_03232at 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.150 kb on - strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.642 kb on + strand, within MPMX19_03233at 535.643 kb on - strand, within MPMX19_03233at 535.643 kb on - strand, within MPMX19_03233at 535.643 kb on - strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 537.077 kb on - strandat 537.077 kb on - strandat 537.582 kb on + strand, within MPMX19_03234at 537.582 kb on + strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.681 kb on + strand, within MPMX19_03234at 537.682 kb on - strand, within MPMX19_03234at 537.682 kb on - strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.861 kb on + strand, within MPMX19_03234at 537.861 kb on + strand, within MPMX19_03234at 537.861 kb on + strand, within MPMX19_03234at 537.862 kb on - strand, within MPMX19_03234at 537.862 kb on - strand, within MPMX19_03234

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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534,162 - -0.6
534,197 + -0.5
534,197 + -0.5
534,197 + -1.0
534,197 + +0.3
534,197 + -1.2
534,197 + -1.9
534,197 + +0.2
534,198 - -1.6
534,198 - +0.8
534,198 - +0.8
534,198 - -0.3
534,198 - -1.5
534,198 - -0.5
534,198 - +0.6
534,198 - -1.2
534,198 - +1.0
534,207 - +0.4
534,597 + MPMX19_03232 0.40 -0.9
534,597 + MPMX19_03232 0.40 -0.7
534,597 + MPMX19_03232 0.40 -0.8
534,597 + MPMX19_03232 0.40 +1.0
534,597 + MPMX19_03232 0.40 +0.4
534,597 + MPMX19_03232 0.40 -2.3
534,597 + MPMX19_03232 0.40 -0.3
534,597 + MPMX19_03232 0.40 -0.2
534,598 - MPMX19_03232 0.40 -1.2
534,598 - MPMX19_03232 0.40 -1.8
534,801 + MPMX19_03232 0.62 -0.7
534,801 + MPMX19_03232 0.62 -1.2
534,801 + MPMX19_03232 0.62 -0.3
534,801 + MPMX19_03232 0.62 -0.2
534,801 + MPMX19_03232 0.62 +0.0
534,801 + MPMX19_03232 0.62 -0.0
534,801 + MPMX19_03232 0.62 -0.6
534,801 + MPMX19_03232 0.62 +0.2
534,801 + MPMX19_03232 0.62 -1.2
534,801 + MPMX19_03232 0.62 -1.7
534,801 + MPMX19_03232 0.62 -1.5
534,801 + MPMX19_03232 0.62 +1.0
534,801 + MPMX19_03232 0.62 +0.8
534,801 + MPMX19_03232 0.62 -1.0
534,801 + MPMX19_03232 0.62 +0.4
534,801 + MPMX19_03232 0.62 -1.3
534,801 + MPMX19_03232 0.62 -0.7
534,801 + MPMX19_03232 0.62 +0.3
534,801 + MPMX19_03232 0.62 -1.0
534,802 - MPMX19_03232 0.62 +0.8
534,802 - MPMX19_03232 0.62 -1.2
534,802 - MPMX19_03232 0.62 -0.3
534,802 - MPMX19_03232 0.62 -0.8
534,802 - MPMX19_03232 0.62 -1.4
534,802 - MPMX19_03232 0.62 +1.2
534,802 - MPMX19_03232 0.62 -1.3
534,802 - MPMX19_03232 0.62 -0.6
534,802 - MPMX19_03232 0.62 -1.0
534,802 - MPMX19_03232 0.62 -1.2
534,802 - MPMX19_03232 0.62 +0.1
534,802 - MPMX19_03232 0.62 +0.5
534,802 - MPMX19_03232 0.62 +0.4
534,802 - MPMX19_03232 0.62 +0.2
534,858 + MPMX19_03232 0.68 -0.2
534,858 + MPMX19_03232 0.68 +0.5
534,858 + MPMX19_03232 0.68 -1.6
534,858 + MPMX19_03232 0.68 -1.9
534,858 + MPMX19_03232 0.68 -0.5
534,859 - MPMX19_03232 0.68 -0.7
534,918 + MPMX19_03232 0.75 +0.0
534,919 - MPMX19_03232 0.75 -0.2
535,092 + +0.2
535,092 + +0.4
535,092 + +0.3
535,092 + -0.7
535,092 + -0.2
535,092 + -2.9
535,093 - +1.3
535,093 - +0.0
535,093 - -0.3
535,093 - +0.4
535,093 - -0.3
535,150 - +0.3
535,339 + -1.3
535,339 + -0.3
535,339 + +0.2
535,339 + +0.4
535,339 + -0.6
535,339 + -1.2
535,339 + -1.0
535,339 + -1.8
535,339 + -0.4
535,339 + -0.9
535,339 + -0.2
535,339 + -0.9
535,339 + +0.3
535,339 + -0.3
535,339 + -1.8
535,339 + +0.0
535,339 + -1.5
535,339 + +1.4
535,339 + -0.7
535,339 + +0.2
535,339 + +0.0
535,339 + +0.0
535,339 + +0.2
535,340 - -0.8
535,340 - -0.6
535,340 - -0.4
535,340 - -0.1
535,340 - +0.7
535,340 - -0.1
535,340 - +0.4
535,340 - -1.6
535,340 - +0.4
535,340 - +0.1
535,340 - -0.3
535,340 - +1.3
535,340 - +0.0
535,340 - +0.3
535,340 - -0.5
535,642 + MPMX19_03233 0.24 -0.5
535,643 - MPMX19_03233 0.24 -1.2
535,643 - MPMX19_03233 0.24 -1.0
535,643 - MPMX19_03233 0.24 +1.1
536,722 + MPMX19_03233 0.78 -1.1
536,722 + MPMX19_03233 0.78 +0.6
536,722 + MPMX19_03233 0.78 +0.3
536,722 + MPMX19_03233 0.78 +0.2
536,722 + MPMX19_03233 0.78 +0.6
536,722 + MPMX19_03233 0.78 +0.1
536,722 + MPMX19_03233 0.78 -1.2
536,722 + MPMX19_03233 0.78 +0.4
536,722 + MPMX19_03233 0.78 -0.2
536,722 + MPMX19_03233 0.78 -1.3
536,722 + MPMX19_03233 0.78 -2.1
536,722 + MPMX19_03233 0.78 -0.2
536,722 + MPMX19_03233 0.78 -2.4
536,722 + MPMX19_03233 0.78 -0.9
536,723 - MPMX19_03233 0.79 -1.6
536,723 - MPMX19_03233 0.79 -0.2
536,723 - MPMX19_03233 0.79 -0.4
536,723 - MPMX19_03233 0.79 +0.4
536,723 - MPMX19_03233 0.79 -1.3
536,723 - MPMX19_03233 0.79 -1.2
536,723 - MPMX19_03233 0.79 -1.4
536,723 - MPMX19_03233 0.79 -0.4
537,077 - -1.0
537,077 - -1.3
537,582 + MPMX19_03234 0.39 +0.0
537,582 + MPMX19_03234 0.39 -0.3
537,583 - MPMX19_03234 0.39 -0.4
537,583 - MPMX19_03234 0.39 +1.4
537,583 - MPMX19_03234 0.39 -0.4
537,583 - MPMX19_03234 0.39 +0.7
537,681 + MPMX19_03234 0.48 -0.9
537,682 - MPMX19_03234 0.48 -0.6
537,682 - MPMX19_03234 0.48 -1.5
537,684 + MPMX19_03234 0.49 -0.4
537,684 + MPMX19_03234 0.49 +0.0
537,684 + MPMX19_03234 0.49 -1.0
537,684 + MPMX19_03234 0.49 -1.5
537,684 + MPMX19_03234 0.49 +0.3
537,684 + MPMX19_03234 0.49 +0.3
537,684 + MPMX19_03234 0.49 -0.6
537,685 - MPMX19_03234 0.49 +0.4
537,685 - MPMX19_03234 0.49 -1.6
537,685 - MPMX19_03234 0.49 +0.5
537,685 - MPMX19_03234 0.49 +0.5
537,685 - MPMX19_03234 0.49 -0.3
537,685 - MPMX19_03234 0.49 -0.8
537,685 - MPMX19_03234 0.49 +0.0
537,685 - MPMX19_03234 0.49 -1.1
537,685 - MPMX19_03234 0.49 -1.9
537,861 + MPMX19_03234 0.65 -1.7
537,861 + MPMX19_03234 0.65 -1.6
537,861 + MPMX19_03234 0.65 -1.2
537,862 - MPMX19_03234 0.65 -1.4
537,862 - MPMX19_03234 0.65 +0.8

Or see this region's nucleotide sequence