Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03231 and MPMX19_03232 are separated by 19 nucleotides MPMX19_03232 and MPMX19_03233 are separated by 4 nucleotides
MPMX19_03231: MPMX19_03231 - Ferrichrome outer membrane transporter/phage receptor, at 531,941 to 534,208
_03231
MPMX19_03232: MPMX19_03232 - Iron(3+)-hydroxamate-binding protein FhuD, at 534,228 to 535,151
_03232
MPMX19_03233: MPMX19_03233 - Iron(3+)-hydroxamate import system permease protein FhuB, at 535,156 to 537,150
_03233
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.262 kb on - strand, within MPMX19_03231 at 533.282 kb on + strand, within MPMX19_03231 at 533.333 kb on + strand, within MPMX19_03231 at 533.333 kb on + strand, within MPMX19_03231 at 533.334 kb on - strand, within MPMX19_03231 at 533.334 kb on - strand, within MPMX19_03231 at 533.334 kb on - strand, within MPMX19_03231 at 533.355 kb on - strand, within MPMX19_03231 at 533.480 kb on + strand, within MPMX19_03231 at 533.480 kb on + strand, within MPMX19_03231 at 533.480 kb on + strand, within MPMX19_03231 at 533.480 kb on + strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.481 kb on - strand, within MPMX19_03231 at 533.507 kb on + strand, within MPMX19_03231 at 533.507 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.516 kb on + strand, within MPMX19_03231 at 533.517 kb on - strand, within MPMX19_03231 at 533.517 kb on - strand, within MPMX19_03231 at 533.517 kb on - strand, within MPMX19_03231 at 533.549 kb on + strand, within MPMX19_03231 at 533.549 kb on + strand, within MPMX19_03231 at 533.550 kb on - strand, within MPMX19_03231 at 533.550 kb on - strand, within MPMX19_03231 at 533.550 kb on - strand, within MPMX19_03231 at 533.550 kb on - strand, within MPMX19_03231 at 533.600 kb on + strand, within MPMX19_03231 at 533.601 kb on - strand, within MPMX19_03231 at 533.601 kb on - strand, within MPMX19_03231 at 533.619 kb on - strand, within MPMX19_03231 at 533.619 kb on - strand, within MPMX19_03231 at 533.661 kb on - strand, within MPMX19_03231 at 533.702 kb on + strand, within MPMX19_03231 at 533.703 kb on - strand, within MPMX19_03231 at 533.703 kb on - strand, within MPMX19_03231 at 533.703 kb on - strand, within MPMX19_03231 at 533.801 kb on + strand, within MPMX19_03231 at 533.801 kb on + strand, within MPMX19_03231 at 533.801 kb on + strand, within MPMX19_03231 at 533.801 kb on + strand, within MPMX19_03231 at 533.801 kb on + strand, within MPMX19_03231 at 533.802 kb on - strand, within MPMX19_03231 at 533.802 kb on - strand, within MPMX19_03231 at 533.802 kb on - strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.918 kb on + strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.919 kb on - strand, within MPMX19_03231 at 533.972 kb on + strand, within MPMX19_03231 at 533.972 kb on + strand, within MPMX19_03231 at 533.972 kb on + strand, within MPMX19_03231 at 533.972 kb on + strand, within MPMX19_03231 at 533.972 kb on + strand, within MPMX19_03231 at 533.973 kb on - strand, within MPMX19_03231 at 533.973 kb on - strand, within MPMX19_03231 at 533.973 kb on - strand, within MPMX19_03231 at 533.973 kb on - strand, within MPMX19_03231 at 534.020 kb on + strand at 534.021 kb on - strand at 534.125 kb on + strand at 534.125 kb on + strand at 534.125 kb on + strand at 534.125 kb on + strand at 534.125 kb on + strand at 534.126 kb on - strand at 534.126 kb on - strand at 534.126 kb on - strand at 534.126 kb on - strand at 534.126 kb on - strand at 534.128 kb on + strand at 534.128 kb on + strand at 534.128 kb on + strand at 534.128 kb on + strand at 534.129 kb on - strand at 534.129 kb on - strand at 534.129 kb on - strand at 534.129 kb on - strand at 534.143 kb on + strand at 534.143 kb on + strand at 534.143 kb on + strand at 534.144 kb on - strand at 534.144 kb on - strand at 534.162 kb on - strand at 534.197 kb on + strand at 534.197 kb on + strand at 534.197 kb on + strand at 534.197 kb on + strand at 534.197 kb on + strand at 534.197 kb on + strand at 534.197 kb on + strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.207 kb on - strand at 534.597 kb on + strand, within MPMX19_03232 at 534.597 kb on + strand, within MPMX19_03232 at 534.597 kb on + strand, within MPMX19_03232 at 534.597 kb on + strand, within MPMX19_03232 at 534.597 kb on + strand, within MPMX19_03232 at 534.597 kb on + strand, within MPMX19_03232 at 534.597 kb on + strand, within MPMX19_03232 at 534.597 kb on + strand, within MPMX19_03232 at 534.598 kb on - strand, within MPMX19_03232 at 534.598 kb on - strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.801 kb on + strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.802 kb on - strand, within MPMX19_03232 at 534.858 kb on + strand, within MPMX19_03232 at 534.858 kb on + strand, within MPMX19_03232 at 534.858 kb on + strand, within MPMX19_03232 at 534.858 kb on + strand, within MPMX19_03232 at 534.858 kb on + strand, within MPMX19_03232 at 534.859 kb on - strand, within MPMX19_03232 at 534.918 kb on + strand, within MPMX19_03232 at 534.919 kb on - strand, within MPMX19_03232 at 535.092 kb on + strand at 535.092 kb on + strand at 535.092 kb on + strand at 535.092 kb on + strand at 535.092 kb on + strand at 535.092 kb on + strand at 535.093 kb on - strand at 535.093 kb on - strand at 535.093 kb on - strand at 535.093 kb on - strand at 535.093 kb on - strand at 535.150 kb on - strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.339 kb on + strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.340 kb on - strand at 535.642 kb on + strand, within MPMX19_03233 at 535.643 kb on - strand, within MPMX19_03233 at 535.643 kb on - strand, within MPMX19_03233 at 535.643 kb on - strand, within MPMX19_03233
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 533,262 - MPMX19_03231 0.58 -2.0 533,282 + MPMX19_03231 0.59 +0.2 533,333 + MPMX19_03231 0.61 -0.3 533,333 + MPMX19_03231 0.61 +0.2 533,334 - MPMX19_03231 0.61 +2.0 533,334 - MPMX19_03231 0.61 -1.7 533,334 - MPMX19_03231 0.61 -1.6 533,355 - MPMX19_03231 0.62 -0.9 533,480 + MPMX19_03231 0.68 -0.4 533,480 + MPMX19_03231 0.68 -1.0 533,480 + MPMX19_03231 0.68 +0.4 533,480 + MPMX19_03231 0.68 +0.1 533,481 - MPMX19_03231 0.68 -0.1 533,481 - MPMX19_03231 0.68 +1.4 533,481 - MPMX19_03231 0.68 +0.1 533,481 - MPMX19_03231 0.68 -1.2 533,481 - MPMX19_03231 0.68 +0.3 533,481 - MPMX19_03231 0.68 -0.2 533,481 - MPMX19_03231 0.68 -1.2 533,481 - MPMX19_03231 0.68 -0.6 533,507 + MPMX19_03231 0.69 +0.0 533,507 + MPMX19_03231 0.69 -2.1 533,516 + MPMX19_03231 0.69 -0.8 533,516 + MPMX19_03231 0.69 -0.9 533,516 + MPMX19_03231 0.69 -2.2 533,516 + MPMX19_03231 0.69 -1.2 533,516 + MPMX19_03231 0.69 -1.3 533,516 + MPMX19_03231 0.69 -1.0 533,516 + MPMX19_03231 0.69 +0.9 533,516 + MPMX19_03231 0.69 -0.8 533,517 - MPMX19_03231 0.69 -0.8 533,517 - MPMX19_03231 0.69 -2.2 533,517 - MPMX19_03231 0.69 -1.7 533,549 + MPMX19_03231 0.71 -2.1 533,549 + MPMX19_03231 0.71 -1.3 533,550 - MPMX19_03231 0.71 -0.1 533,550 - MPMX19_03231 0.71 -1.2 533,550 - MPMX19_03231 0.71 -2.2 533,550 - MPMX19_03231 0.71 +0.3 533,600 + MPMX19_03231 0.73 -2.0 533,601 - MPMX19_03231 0.73 +0.0 533,601 - MPMX19_03231 0.73 -0.8 533,619 - MPMX19_03231 0.74 -1.8 533,619 - MPMX19_03231 0.74 -0.5 533,661 - MPMX19_03231 0.76 -0.4 533,702 + MPMX19_03231 0.78 -1.3 533,703 - MPMX19_03231 0.78 -1.3 533,703 - MPMX19_03231 0.78 +0.2 533,703 - MPMX19_03231 0.78 -1.5 533,801 + MPMX19_03231 0.82 +0.4 533,801 + MPMX19_03231 0.82 -1.4 533,801 + MPMX19_03231 0.82 -2.2 533,801 + MPMX19_03231 0.82 -1.6 533,801 + MPMX19_03231 0.82 -1.3 533,802 - MPMX19_03231 0.82 +0.4 533,802 - MPMX19_03231 0.82 -1.0 533,802 - MPMX19_03231 0.82 -0.7 533,918 + MPMX19_03231 0.87 -0.5 533,918 + MPMX19_03231 0.87 -0.4 533,918 + MPMX19_03231 0.87 -0.3 533,918 + MPMX19_03231 0.87 +0.6 533,918 + MPMX19_03231 0.87 -1.3 533,918 + MPMX19_03231 0.87 -0.2 533,918 + MPMX19_03231 0.87 -0.1 533,918 + MPMX19_03231 0.87 -1.2 533,918 + MPMX19_03231 0.87 -0.7 533,918 + MPMX19_03231 0.87 +0.6 533,919 - MPMX19_03231 0.87 -1.7 533,919 - MPMX19_03231 0.87 -0.4 533,919 - MPMX19_03231 0.87 +0.4 533,919 - MPMX19_03231 0.87 -2.7 533,919 - MPMX19_03231 0.87 -1.3 533,919 - MPMX19_03231 0.87 -0.7 533,919 - MPMX19_03231 0.87 -1.2 533,919 - MPMX19_03231 0.87 -2.3 533,972 + MPMX19_03231 0.90 +0.0 533,972 + MPMX19_03231 0.90 -0.2 533,972 + MPMX19_03231 0.90 +0.2 533,972 + MPMX19_03231 0.90 -0.7 533,972 + MPMX19_03231 0.90 -0.8 533,973 - MPMX19_03231 0.90 +0.5 533,973 - MPMX19_03231 0.90 -0.7 533,973 - MPMX19_03231 0.90 +0.2 533,973 - MPMX19_03231 0.90 -0.7 534,020 + +0.0 534,021 - -1.0 534,125 + -0.2 534,125 + -1.2 534,125 + -0.7 534,125 + -1.0 534,125 + -1.2 534,126 - -1.3 534,126 - +0.8 534,126 - +0.7 534,126 - -2.7 534,126 - -0.6 534,128 + +0.0 534,128 + +0.7 534,128 + +0.0 534,128 + +0.8 534,129 - -0.3 534,129 - +1.6 534,129 - -0.8 534,129 - -0.2 534,143 + -0.5 534,143 + -0.7 534,143 + -0.6 534,144 - +1.0 534,144 - -0.8 534,162 - -0.6 534,197 + -0.5 534,197 + -0.5 534,197 + -1.0 534,197 + +0.3 534,197 + -1.2 534,197 + -1.9 534,197 + +0.2 534,198 - -1.6 534,198 - +0.8 534,198 - +0.8 534,198 - -0.3 534,198 - -1.5 534,198 - -0.5 534,198 - +0.6 534,198 - -1.2 534,198 - +1.0 534,207 - +0.4 534,597 + MPMX19_03232 0.40 -0.9 534,597 + MPMX19_03232 0.40 -0.7 534,597 + MPMX19_03232 0.40 -0.8 534,597 + MPMX19_03232 0.40 +1.0 534,597 + MPMX19_03232 0.40 +0.4 534,597 + MPMX19_03232 0.40 -2.3 534,597 + MPMX19_03232 0.40 -0.3 534,597 + MPMX19_03232 0.40 -0.2 534,598 - MPMX19_03232 0.40 -1.2 534,598 - MPMX19_03232 0.40 -1.8 534,801 + MPMX19_03232 0.62 -0.7 534,801 + MPMX19_03232 0.62 -1.2 534,801 + MPMX19_03232 0.62 -0.3 534,801 + MPMX19_03232 0.62 -0.2 534,801 + MPMX19_03232 0.62 +0.0 534,801 + MPMX19_03232 0.62 -0.0 534,801 + MPMX19_03232 0.62 -0.6 534,801 + MPMX19_03232 0.62 +0.2 534,801 + MPMX19_03232 0.62 -1.2 534,801 + MPMX19_03232 0.62 -1.7 534,801 + MPMX19_03232 0.62 -1.5 534,801 + MPMX19_03232 0.62 +1.0 534,801 + MPMX19_03232 0.62 +0.8 534,801 + MPMX19_03232 0.62 -1.0 534,801 + MPMX19_03232 0.62 +0.4 534,801 + MPMX19_03232 0.62 -1.3 534,801 + MPMX19_03232 0.62 -0.7 534,801 + MPMX19_03232 0.62 +0.3 534,801 + MPMX19_03232 0.62 -1.0 534,802 - MPMX19_03232 0.62 +0.8 534,802 - MPMX19_03232 0.62 -1.2 534,802 - MPMX19_03232 0.62 -0.3 534,802 - MPMX19_03232 0.62 -0.8 534,802 - MPMX19_03232 0.62 -1.4 534,802 - MPMX19_03232 0.62 +1.2 534,802 - MPMX19_03232 0.62 -1.3 534,802 - MPMX19_03232 0.62 -0.6 534,802 - MPMX19_03232 0.62 -1.0 534,802 - MPMX19_03232 0.62 -1.2 534,802 - MPMX19_03232 0.62 +0.1 534,802 - MPMX19_03232 0.62 +0.5 534,802 - MPMX19_03232 0.62 +0.4 534,802 - MPMX19_03232 0.62 +0.2 534,858 + MPMX19_03232 0.68 -0.2 534,858 + MPMX19_03232 0.68 +0.5 534,858 + MPMX19_03232 0.68 -1.6 534,858 + MPMX19_03232 0.68 -1.9 534,858 + MPMX19_03232 0.68 -0.5 534,859 - MPMX19_03232 0.68 -0.7 534,918 + MPMX19_03232 0.75 +0.0 534,919 - MPMX19_03232 0.75 -0.2 535,092 + +0.2 535,092 + +0.4 535,092 + +0.3 535,092 + -0.7 535,092 + -0.2 535,092 + -2.9 535,093 - +1.3 535,093 - +0.0 535,093 - -0.3 535,093 - +0.4 535,093 - -0.3 535,150 - +0.3 535,339 + -1.3 535,339 + -0.3 535,339 + +0.2 535,339 + +0.4 535,339 + -0.6 535,339 + -1.2 535,339 + -1.0 535,339 + -1.8 535,339 + -0.4 535,339 + -0.9 535,339 + -0.2 535,339 + -0.9 535,339 + +0.3 535,339 + -0.3 535,339 + -1.8 535,339 + +0.0 535,339 + -1.5 535,339 + +1.4 535,339 + -0.7 535,339 + +0.2 535,339 + +0.0 535,339 + +0.0 535,339 + +0.2 535,340 - -0.8 535,340 - -0.6 535,340 - -0.4 535,340 - -0.1 535,340 - +0.7 535,340 - -0.1 535,340 - +0.4 535,340 - -1.6 535,340 - +0.4 535,340 - +0.1 535,340 - -0.3 535,340 - +1.3 535,340 - +0.0 535,340 - +0.3 535,340 - -0.5 535,642 + MPMX19_03233 0.24 -0.5 535,643 - MPMX19_03233 0.24 -1.2 535,643 - MPMX19_03233 0.24 -1.0 535,643 - MPMX19_03233 0.24 +1.1
Or see this region's nucleotide sequence