Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03227

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03225 and MPMX19_03226 are separated by 441 nucleotidesMPMX19_03226 and MPMX19_03227 are separated by 197 nucleotidesMPMX19_03227 and MPMX19_03228 overlap by 4 nucleotides MPMX19_03225: MPMX19_03225 - Organic hydroperoxide resistance transcriptional regulator, at 526,277 to 526,819 _03225 MPMX19_03226: MPMX19_03226 - hypothetical protein, at 527,261 to 527,554 _03226 MPMX19_03227: MPMX19_03227 - hypothetical protein, at 527,752 to 528,078 _03227 MPMX19_03228: MPMX19_03228 - L-ornithine N(5)-monooxygenase, at 528,075 to 529,433 _03228 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 526.878 kb on + strandat 526.878 kb on + strandat 526.878 kb on + strandat 527.220 kb on + strandat 527.220 kb on + strandat 527.220 kb on + strandat 527.221 kb on - strandat 527.221 kb on - strandat 527.221 kb on - strandat 527.262 kb on + strandat 527.263 kb on - strandat 527.263 kb on - strandat 527.270 kb on + strandat 527.271 kb on - strandat 527.271 kb on - strandat 527.271 kb on - strandat 527.282 kb on + strandat 527.282 kb on + strandat 527.294 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.381 kb on - strand, within MPMX19_03226at 527.668 kb on + strandat 528.204 kb on + strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.205 kb on - strandat 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.225 kb on + strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.226 kb on - strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.318 kb on + strand, within MPMX19_03228at 528.319 kb on - strand, within MPMX19_03228at 528.319 kb on - strand, within MPMX19_03228at 528.319 kb on - strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.333 kb on + strand, within MPMX19_03228at 528.334 kb on - strand, within MPMX19_03228at 528.334 kb on - strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.384 kb on + strand, within MPMX19_03228at 528.385 kb on - strand, within MPMX19_03228at 528.385 kb on - strand, within MPMX19_03228at 528.412 kb on - strand, within MPMX19_03228at 528.412 kb on - strand, within MPMX19_03228at 528.412 kb on - strand, within MPMX19_03228at 528.453 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.658 kb on + strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.862 kb on - strand, within MPMX19_03228at 528.862 kb on - strand, within MPMX19_03228at 528.862 kb on - strand, within MPMX19_03228at 528.864 kb on - strand, within MPMX19_03228at 528.864 kb on - strand, within MPMX19_03228at 528.864 kb on - strand, within MPMX19_03228at 528.918 kb on + strand, within MPMX19_03228at 528.918 kb on + strand, within MPMX19_03228at 528.919 kb on - strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.982 kb on - strand, within MPMX19_03228at 528.982 kb on - strand, within MPMX19_03228

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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526,878 + -1.8
526,878 + +0.6
526,878 + -0.9
527,220 + +2.4
527,220 + -1.1
527,220 + +0.1
527,221 - -0.2
527,221 - +0.4
527,221 - -0.8
527,262 + -0.9
527,263 - -0.7
527,263 - -0.7
527,270 + -0.3
527,271 - -0.3
527,271 - +0.2
527,271 - -0.8
527,282 + +0.3
527,282 + +0.0
527,294 + MPMX19_03226 0.11 -2.1
527,320 + MPMX19_03226 0.20 -1.7
527,320 + MPMX19_03226 0.20 -0.1
527,320 + MPMX19_03226 0.20 -1.0
527,321 - MPMX19_03226 0.20 -1.3
527,321 - MPMX19_03226 0.20 +0.0
527,321 - MPMX19_03226 0.20 -0.3
527,381 - MPMX19_03226 0.41 -1.7
527,668 + -1.0
528,204 + -0.6
528,205 - -1.9
528,205 - +0.0
528,205 - +0.1
528,205 - -2.2
528,205 - -0.4
528,205 - +0.4
528,225 + MPMX19_03228 0.11 -3.3
528,225 + MPMX19_03228 0.11 +0.2
528,225 + MPMX19_03228 0.11 -2.3
528,225 + MPMX19_03228 0.11 -0.2
528,225 + MPMX19_03228 0.11 -2.4
528,225 + MPMX19_03228 0.11 +0.2
528,226 - MPMX19_03228 0.11 +0.8
528,226 - MPMX19_03228 0.11 -1.3
528,226 - MPMX19_03228 0.11 +0.4
528,226 - MPMX19_03228 0.11 -2.0
528,226 - MPMX19_03228 0.11 -0.6
528,226 - MPMX19_03228 0.11 -1.2
528,226 - MPMX19_03228 0.11 -0.2
528,226 - MPMX19_03228 0.11 +1.5
528,318 + MPMX19_03228 0.18 -0.2
528,318 + MPMX19_03228 0.18 -0.6
528,318 + MPMX19_03228 0.18 -1.2
528,318 + MPMX19_03228 0.18 -0.6
528,319 - MPMX19_03228 0.18 -0.7
528,319 - MPMX19_03228 0.18 +0.2
528,319 - MPMX19_03228 0.18 +0.0
528,333 + MPMX19_03228 0.19 -1.8
528,333 + MPMX19_03228 0.19 -1.6
528,333 + MPMX19_03228 0.19 +0.8
528,333 + MPMX19_03228 0.19 +1.1
528,333 + MPMX19_03228 0.19 +1.2
528,333 + MPMX19_03228 0.19 -0.6
528,333 + MPMX19_03228 0.19 -1.3
528,334 - MPMX19_03228 0.19 -1.2
528,334 - MPMX19_03228 0.19 -1.5
528,384 + MPMX19_03228 0.23 -0.6
528,384 + MPMX19_03228 0.23 +0.7
528,384 + MPMX19_03228 0.23 +1.0
528,384 + MPMX19_03228 0.23 -1.8
528,384 + MPMX19_03228 0.23 +0.0
528,385 - MPMX19_03228 0.23 -2.0
528,385 - MPMX19_03228 0.23 -1.0
528,412 - MPMX19_03228 0.25 -1.0
528,412 - MPMX19_03228 0.25 +0.0
528,412 - MPMX19_03228 0.25 -1.2
528,453 + MPMX19_03228 0.28 -0.6
528,657 + MPMX19_03228 0.43 -0.6
528,657 + MPMX19_03228 0.43 -1.7
528,657 + MPMX19_03228 0.43 -1.8
528,657 + MPMX19_03228 0.43 -0.9
528,657 + MPMX19_03228 0.43 +0.3
528,657 + MPMX19_03228 0.43 +0.4
528,657 + MPMX19_03228 0.43 -0.7
528,657 + MPMX19_03228 0.43 +0.4
528,658 + MPMX19_03228 0.43 -0.6
528,658 - MPMX19_03228 0.43 -1.3
528,658 - MPMX19_03228 0.43 -0.8
528,658 - MPMX19_03228 0.43 -0.8
528,658 - MPMX19_03228 0.43 -1.7
528,658 - MPMX19_03228 0.43 +0.8
528,658 - MPMX19_03228 0.43 -0.4
528,862 - MPMX19_03228 0.58 +0.4
528,862 - MPMX19_03228 0.58 -0.9
528,862 - MPMX19_03228 0.58 -0.7
528,864 - MPMX19_03228 0.58 -0.1
528,864 - MPMX19_03228 0.58 -0.3
528,864 - MPMX19_03228 0.58 -1.8
528,918 + MPMX19_03228 0.62 +0.7
528,918 + MPMX19_03228 0.62 +0.4
528,919 - MPMX19_03228 0.62 -0.8
528,933 + MPMX19_03228 0.63 -1.9
528,933 + MPMX19_03228 0.63 +1.3
528,933 + MPMX19_03228 0.63 +0.8
528,933 + MPMX19_03228 0.63 -1.2
528,933 + MPMX19_03228 0.63 +1.0
528,934 - MPMX19_03228 0.63 +1.0
528,934 - MPMX19_03228 0.63 -0.4
528,934 - MPMX19_03228 0.63 -0.1
528,934 - MPMX19_03228 0.63 -1.3
528,934 - MPMX19_03228 0.63 -0.2
528,969 + MPMX19_03228 0.66 -1.2
528,969 + MPMX19_03228 0.66 -0.3
528,969 + MPMX19_03228 0.66 -1.6
528,969 + MPMX19_03228 0.66 +0.2
528,969 + MPMX19_03228 0.66 -2.9
528,970 - MPMX19_03228 0.66 -1.0
528,970 - MPMX19_03228 0.66 -0.9
528,970 - MPMX19_03228 0.66 -0.9
528,970 - MPMX19_03228 0.66 +0.3
528,982 - MPMX19_03228 0.67 +0.8
528,982 - MPMX19_03228 0.67 +0.2

Or see this region's nucleotide sequence