Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03221 and MPMX19_03222 overlap by 4 nucleotides MPMX19_03222 and MPMX19_03223 are separated by 226 nucleotides MPMX19_03223 and MPMX19_03224 are separated by 51 nucleotides
MPMX19_03221: MPMX19_03221 - Adaptive-response sensory-kinase SasA, at 521,321 to 522,673
_03221
MPMX19_03222: MPMX19_03222 - Transcriptional regulatory protein OmpR, at 522,670 to 523,410
_03222
MPMX19_03223: MPMX19_03223 - hypothetical protein, at 523,637 to 524,407
_03223
MPMX19_03224: MPMX19_03224 - Protein DipZ, at 524,459 to 526,234
_03224
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 523.103 kb on + strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.341 kb on + strand at 523.344 kb on - strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.490 kb on - strand at 523.490 kb on - strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.537 kb on + strand at 523.538 kb on - strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.805 kb on + strand, within MPMX19_03223 at 523.805 kb on + strand, within MPMX19_03223 at 523.806 kb on - strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 524.081 kb on + strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.927 kb on + strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 525.111 kb on - strand, within MPMX19_03224 at 525.239 kb on + strand, within MPMX19_03224 at 525.239 kb on + strand, within MPMX19_03224 at 525.239 kb on + strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.245 kb on - strand, within MPMX19_03224 at 525.245 kb on - strand, within MPMX19_03224 at 525.245 kb on - strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.398 kb on + strand, within MPMX19_03224 at 525.399 kb on - strand, within MPMX19_03224 at 525.399 kb on - strand, within MPMX19_03224 at 525.399 kb on - strand, within MPMX19_03224
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 522,713 + -0.8 522,713 + -0.1 522,713 + -0.5 522,713 + +0.1 522,713 + -1.8 522,713 + -0.5 522,713 + +1.3 522,713 + +1.4 522,713 + -1.0 522,713 + +1.0 522,713 + +0.1 522,713 + +0.4 522,713 + -1.2 522,713 + +0.3 522,714 - +0.4 522,714 - +1.1 522,714 - +0.1 522,714 - -0.1 522,714 - -1.2 522,714 - +0.2 522,714 - -0.1 522,714 - +0.2 522,714 - -0.8 522,714 - +1.5 523,103 + MPMX19_03222 0.58 -0.6 523,104 - MPMX19_03222 0.59 -0.2 523,104 - MPMX19_03222 0.59 -1.2 523,341 + +0.4 523,344 - +0.7 523,442 + -0.9 523,442 + +1.4 523,442 + -0.2 523,442 + +0.0 523,442 + +0.5 523,442 + -0.6 523,442 + -0.8 523,442 + -0.7 523,442 + -0.4 523,442 + -1.3 523,442 + -1.0 523,442 + -0.3 523,442 + -1.0 523,443 - +0.4 523,443 - -0.9 523,443 - -1.8 523,443 - -1.3 523,443 - -1.3 523,443 - -0.5 523,443 - -0.3 523,443 - -0.3 523,443 - -0.7 523,443 - -0.6 523,489 + +0.3 523,489 + +0.4 523,489 + -0.5 523,490 - +0.2 523,490 - -0.3 523,508 + -0.6 523,508 + +0.1 523,508 + -0.1 523,509 - -0.2 523,509 - -1.2 523,509 - -1.3 523,509 - +0.4 523,537 + -1.3 523,538 - -0.6 523,630 + +1.0 523,630 + -1.3 523,630 + -1.0 523,630 + -1.7 523,630 + -0.9 523,631 - -0.9 523,631 - -2.8 523,631 - +0.3 523,631 - -0.1 523,631 - +0.4 523,631 - +0.8 523,631 - +0.4 523,805 + MPMX19_03223 0.22 -1.4 523,805 + MPMX19_03223 0.22 -0.6 523,806 - MPMX19_03223 0.22 -0.4 523,916 + MPMX19_03223 0.36 +0.0 523,916 + MPMX19_03223 0.36 -0.9 523,916 + MPMX19_03223 0.36 -0.8 523,916 + MPMX19_03223 0.36 -1.0 523,916 + MPMX19_03223 0.36 -1.7 523,917 - MPMX19_03223 0.36 -1.5 523,917 - MPMX19_03223 0.36 +0.0 523,917 - MPMX19_03223 0.36 +0.1 523,917 - MPMX19_03223 0.36 -2.1 523,917 - MPMX19_03223 0.36 -0.8 523,973 + MPMX19_03223 0.44 -1.3 523,973 + MPMX19_03223 0.44 +0.5 523,973 + MPMX19_03223 0.44 -0.7 523,973 + MPMX19_03223 0.44 -1.1 523,973 + MPMX19_03223 0.44 -0.4 523,973 + MPMX19_03223 0.44 -0.3 523,973 + MPMX19_03223 0.44 +0.2 523,973 + MPMX19_03223 0.44 -0.7 523,973 + MPMX19_03223 0.44 +0.0 523,973 + MPMX19_03223 0.44 -0.6 523,973 + MPMX19_03223 0.44 -0.6 523,974 - MPMX19_03223 0.44 -0.9 523,974 - MPMX19_03223 0.44 -1.0 523,974 - MPMX19_03223 0.44 -0.2 523,974 - MPMX19_03223 0.44 -0.4 523,974 - MPMX19_03223 0.44 -1.4 523,974 - MPMX19_03223 0.44 -1.6 523,974 - MPMX19_03223 0.44 -0.6 523,974 - MPMX19_03223 0.44 +0.3 524,081 + MPMX19_03223 0.58 -0.3 524,082 - MPMX19_03223 0.58 +0.0 524,082 - MPMX19_03223 0.58 -1.0 524,082 - MPMX19_03223 0.58 +0.5 524,082 - MPMX19_03223 0.58 -1.4 524,082 - MPMX19_03223 0.58 +0.0 524,082 - MPMX19_03223 0.58 -1.0 524,087 + MPMX19_03223 0.58 -1.1 524,087 + MPMX19_03223 0.58 -1.2 524,088 - MPMX19_03223 0.58 -2.3 524,088 - MPMX19_03223 0.58 -0.3 524,088 - MPMX19_03223 0.58 -0.3 524,088 - MPMX19_03223 0.58 -1.0 524,342 + -1.8 524,342 + +0.2 524,342 + +0.1 524,342 + -0.1 524,342 + -1.2 524,343 - +0.0 524,343 - -2.0 524,343 - -1.2 524,343 - -0.7 524,343 - +0.0 524,927 + MPMX19_03224 0.26 -0.3 524,928 - MPMX19_03224 0.26 +0.0 524,928 - MPMX19_03224 0.26 -1.1 524,928 - MPMX19_03224 0.26 -1.9 524,928 - MPMX19_03224 0.26 -0.3 524,928 - MPMX19_03224 0.26 +0.4 525,111 - MPMX19_03224 0.37 -1.1 525,239 + MPMX19_03224 0.44 +0.4 525,239 + MPMX19_03224 0.44 -1.0 525,239 + MPMX19_03224 0.44 -0.5 525,240 - MPMX19_03224 0.44 -0.6 525,240 - MPMX19_03224 0.44 +1.5 525,240 - MPMX19_03224 0.44 +0.0 525,240 - MPMX19_03224 0.44 -0.2 525,240 - MPMX19_03224 0.44 +0.6 525,240 - MPMX19_03224 0.44 -0.3 525,240 - MPMX19_03224 0.44 -2.7 525,244 + MPMX19_03224 0.44 -1.0 525,244 + MPMX19_03224 0.44 -0.7 525,244 + MPMX19_03224 0.44 -1.2 525,244 + MPMX19_03224 0.44 -0.1 525,244 + MPMX19_03224 0.44 -1.3 525,244 + MPMX19_03224 0.44 -0.3 525,244 + MPMX19_03224 0.44 -2.3 525,244 + MPMX19_03224 0.44 +0.2 525,245 - MPMX19_03224 0.44 +0.4 525,245 - MPMX19_03224 0.44 -1.3 525,245 - MPMX19_03224 0.44 -2.2 525,365 + MPMX19_03224 0.51 -1.3 525,365 + MPMX19_03224 0.51 -0.4 525,365 + MPMX19_03224 0.51 -0.9 525,365 + MPMX19_03224 0.51 -0.8 525,365 + MPMX19_03224 0.51 -0.4 525,366 - MPMX19_03224 0.51 +0.7 525,366 - MPMX19_03224 0.51 +0.7 525,366 - MPMX19_03224 0.51 +0.4 525,366 - MPMX19_03224 0.51 +0.5 525,366 - MPMX19_03224 0.51 -0.5 525,398 + MPMX19_03224 0.53 -1.6 525,399 - MPMX19_03224 0.53 -0.7 525,399 - MPMX19_03224 0.53 -1.7 525,399 - MPMX19_03224 0.53 -0.3
Or see this region's nucleotide sequence