Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03221 and MPMX19_03222 overlap by 4 nucleotides MPMX19_03222 and MPMX19_03223 are separated by 226 nucleotides
MPMX19_03221: MPMX19_03221 - Adaptive-response sensory-kinase SasA, at 521,321 to 522,673
_03221
MPMX19_03222: MPMX19_03222 - Transcriptional regulatory protein OmpR, at 522,670 to 523,410
_03222
MPMX19_03223: MPMX19_03223 - hypothetical protein, at 523,637 to 524,407
_03223
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 521.704 kb on - strand, within MPMX19_03221 at 521.704 kb on - strand, within MPMX19_03221 at 521.704 kb on - strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.950 kb on - strand, within MPMX19_03221 at 521.950 kb on - strand, within MPMX19_03221 at 522.375 kb on + strand, within MPMX19_03221 at 522.375 kb on + strand, within MPMX19_03221 at 522.376 kb on - strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 523.103 kb on + strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.341 kb on + strand at 523.344 kb on - strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.490 kb on - strand at 523.490 kb on - strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.537 kb on + strand at 523.538 kb on - strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.805 kb on + strand, within MPMX19_03223 at 523.805 kb on + strand, within MPMX19_03223 at 523.806 kb on - strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 524.081 kb on + strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 521,704 - MPMX19_03221 0.28 +0.2 521,704 - MPMX19_03221 0.28 +1.0 521,704 - MPMX19_03221 0.28 -1.0 521,784 + MPMX19_03221 0.34 -0.3 521,784 + MPMX19_03221 0.34 -0.9 521,784 + MPMX19_03221 0.34 -0.9 521,784 + MPMX19_03221 0.34 +0.7 521,784 + MPMX19_03221 0.34 -1.3 521,784 + MPMX19_03221 0.34 -0.3 521,784 + MPMX19_03221 0.34 -0.6 521,785 - MPMX19_03221 0.34 +0.8 521,785 - MPMX19_03221 0.34 +1.4 521,785 - MPMX19_03221 0.34 +1.6 521,785 - MPMX19_03221 0.34 +0.3 521,785 - MPMX19_03221 0.34 +0.0 521,785 - MPMX19_03221 0.34 -0.5 521,949 + MPMX19_03221 0.46 -0.1 521,949 + MPMX19_03221 0.46 -0.7 521,949 + MPMX19_03221 0.46 +0.1 521,949 + MPMX19_03221 0.46 -0.2 521,950 - MPMX19_03221 0.46 -2.6 521,950 - MPMX19_03221 0.46 -1.0 522,375 + MPMX19_03221 0.78 -2.1 522,375 + MPMX19_03221 0.78 -0.7 522,376 - MPMX19_03221 0.78 -1.0 522,381 + MPMX19_03221 0.78 -0.1 522,381 + MPMX19_03221 0.78 -2.4 522,381 + MPMX19_03221 0.78 -1.4 522,382 - MPMX19_03221 0.78 -0.3 522,382 - MPMX19_03221 0.78 +0.7 522,382 - MPMX19_03221 0.78 -1.0 522,382 - MPMX19_03221 0.78 +0.7 522,382 - MPMX19_03221 0.78 -0.1 522,713 + -0.8 522,713 + -0.1 522,713 + -0.5 522,713 + +0.1 522,713 + -1.8 522,713 + -0.5 522,713 + +1.3 522,713 + +1.4 522,713 + -1.0 522,713 + +1.0 522,713 + +0.1 522,713 + +0.4 522,713 + -1.2 522,713 + +0.3 522,714 - +0.4 522,714 - +1.1 522,714 - +0.1 522,714 - -0.1 522,714 - -1.2 522,714 - +0.2 522,714 - -0.1 522,714 - +0.2 522,714 - -0.8 522,714 - +1.5 523,103 + MPMX19_03222 0.58 -0.6 523,104 - MPMX19_03222 0.59 -0.2 523,104 - MPMX19_03222 0.59 -1.2 523,341 + +0.4 523,344 - +0.7 523,442 + -0.9 523,442 + +1.4 523,442 + -0.2 523,442 + +0.0 523,442 + +0.5 523,442 + -0.6 523,442 + -0.8 523,442 + -0.7 523,442 + -0.4 523,442 + -1.3 523,442 + -1.0 523,442 + -0.3 523,442 + -1.0 523,443 - +0.4 523,443 - -0.9 523,443 - -1.8 523,443 - -1.3 523,443 - -1.3 523,443 - -0.5 523,443 - -0.3 523,443 - -0.3 523,443 - -0.7 523,443 - -0.6 523,489 + +0.3 523,489 + +0.4 523,489 + -0.5 523,490 - +0.2 523,490 - -0.3 523,508 + -0.6 523,508 + +0.1 523,508 + -0.1 523,509 - -0.2 523,509 - -1.2 523,509 - -1.3 523,509 - +0.4 523,537 + -1.3 523,538 - -0.6 523,630 + +1.0 523,630 + -1.3 523,630 + -1.0 523,630 + -1.7 523,630 + -0.9 523,631 - -0.9 523,631 - -2.8 523,631 - +0.3 523,631 - -0.1 523,631 - +0.4 523,631 - +0.8 523,631 - +0.4 523,805 + MPMX19_03223 0.22 -1.4 523,805 + MPMX19_03223 0.22 -0.6 523,806 - MPMX19_03223 0.22 -0.4 523,916 + MPMX19_03223 0.36 +0.0 523,916 + MPMX19_03223 0.36 -0.9 523,916 + MPMX19_03223 0.36 -0.8 523,916 + MPMX19_03223 0.36 -1.0 523,916 + MPMX19_03223 0.36 -1.7 523,917 - MPMX19_03223 0.36 -1.5 523,917 - MPMX19_03223 0.36 +0.0 523,917 - MPMX19_03223 0.36 +0.1 523,917 - MPMX19_03223 0.36 -2.1 523,917 - MPMX19_03223 0.36 -0.8 523,973 + MPMX19_03223 0.44 -1.3 523,973 + MPMX19_03223 0.44 +0.5 523,973 + MPMX19_03223 0.44 -0.7 523,973 + MPMX19_03223 0.44 -1.1 523,973 + MPMX19_03223 0.44 -0.4 523,973 + MPMX19_03223 0.44 -0.3 523,973 + MPMX19_03223 0.44 +0.2 523,973 + MPMX19_03223 0.44 -0.7 523,973 + MPMX19_03223 0.44 +0.0 523,973 + MPMX19_03223 0.44 -0.6 523,973 + MPMX19_03223 0.44 -0.6 523,974 - MPMX19_03223 0.44 -0.9 523,974 - MPMX19_03223 0.44 -1.0 523,974 - MPMX19_03223 0.44 -0.2 523,974 - MPMX19_03223 0.44 -0.4 523,974 - MPMX19_03223 0.44 -1.4 523,974 - MPMX19_03223 0.44 -1.6 523,974 - MPMX19_03223 0.44 -0.6 523,974 - MPMX19_03223 0.44 +0.3 524,081 + MPMX19_03223 0.58 -0.3 524,082 - MPMX19_03223 0.58 +0.0 524,082 - MPMX19_03223 0.58 -1.0 524,082 - MPMX19_03223 0.58 +0.5 524,082 - MPMX19_03223 0.58 -1.4 524,082 - MPMX19_03223 0.58 +0.0 524,082 - MPMX19_03223 0.58 -1.0 524,087 + MPMX19_03223 0.58 -1.1 524,087 + MPMX19_03223 0.58 -1.2 524,088 - MPMX19_03223 0.58 -2.3 524,088 - MPMX19_03223 0.58 -0.3 524,088 - MPMX19_03223 0.58 -0.3 524,088 - MPMX19_03223 0.58 -1.0 524,342 + -1.8 524,342 + +0.2 524,342 + +0.1 524,342 + -0.1 524,342 + -1.2 524,343 - +0.0 524,343 - -2.0 524,343 - -1.2 524,343 - -0.7 524,343 - +0.0
Or see this region's nucleotide sequence