Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03217

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03215 and MPMX19_03216 are separated by 170 nucleotidesMPMX19_03216 and MPMX19_03217 are separated by 47 nucleotidesMPMX19_03217 and MPMX19_03218 are separated by 488 nucleotides MPMX19_03215: MPMX19_03215 - HTH-type transcriptional regulator PgrR, at 514,364 to 515,230 _03215 MPMX19_03216: MPMX19_03216 - Glucose 1-dehydrogenase, at 515,401 to 516,156 _03216 MPMX19_03217: MPMX19_03217 - 2-haloacrylate reductase, at 516,204 to 517,205 _03217 MPMX19_03218: MPMX19_03218 - Haloalkane dehalogenase, at 517,694 to 518,767 _03218 Position (kb) 516 517 518Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 515.246 kb on + strandat 515.246 kb on + strandat 515.247 kb on - strandat 515.247 kb on - strandat 515.247 kb on - strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.274 kb on - strandat 515.274 kb on - strandat 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.625 kb on - strand, within MPMX19_03216at 515.701 kb on - strand, within MPMX19_03216at 515.851 kb on + strand, within MPMX19_03216at 515.852 kb on - strand, within MPMX19_03216at 515.852 kb on - strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.219 kb on + strandat 516.220 kb on - strandat 516.220 kb on - strandat 516.220 kb on - strandat 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.717 kb on + strand, within MPMX19_03217at 516.718 kb on - strand, within MPMX19_03217at 516.718 kb on - strand, within MPMX19_03217at 516.718 kb on - strand, within MPMX19_03217at 516.937 kb on - strand, within MPMX19_03217at 517.052 kb on + strand, within MPMX19_03217at 517.053 kb on - strand, within MPMX19_03217at 517.053 kb on - strand, within MPMX19_03217at 517.053 kb on - strand, within MPMX19_03217at 517.142 kb on + strandat 517.143 kb on - strandat 517.236 kb on + strandat 517.344 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.365 kb on + strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.366 kb on - strandat 517.547 kb on + strandat 517.547 kb on + strandat 517.547 kb on + strandat 517.548 kb on - strandat 517.548 kb on - strandat 517.548 kb on - strandat 517.587 kb on + strandat 517.587 kb on + strandat 517.587 kb on + strandat 517.588 kb on - strandat 517.626 kb on + strandat 517.626 kb on + strandat 517.627 kb on - strandat 517.627 kb on - strandat 517.627 kb on - strandat 517.627 kb on - strandat 517.627 kb on - strandat 517.627 kb on - strandat 517.715 kb on + strandat 517.716 kb on - strandat 517.791 kb on + strandat 517.792 kb on - strandat 517.815 kb on + strand, within MPMX19_03218at 517.815 kb on + strand, within MPMX19_03218at 517.815 kb on + strand, within MPMX19_03218at 517.815 kb on + strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.816 kb on - strand, within MPMX19_03218at 517.920 kb on + strand, within MPMX19_03218at 517.920 kb on + strand, within MPMX19_03218at 517.920 kb on + strand, within MPMX19_03218at 517.920 kb on + strand, within MPMX19_03218at 517.920 kb on + strand, within MPMX19_03218at 517.920 kb on + strand, within MPMX19_03218at 517.920 kb on + strand, within MPMX19_03218at 517.921 kb on - strand, within MPMX19_03218at 517.921 kb on - strand, within MPMX19_03218at 517.921 kb on - strand, within MPMX19_03218at 517.921 kb on - strand, within MPMX19_03218at 517.959 kb on + strand, within MPMX19_03218at 517.959 kb on + strand, within MPMX19_03218at 517.960 kb on - strand, within MPMX19_03218at 517.960 kb on - strand, within MPMX19_03218at 517.960 kb on - strand, within MPMX19_03218at 518.086 kb on + strand, within MPMX19_03218at 518.087 kb on - strand, within MPMX19_03218at 518.087 kb on - strand, within MPMX19_03218at 518.088 kb on + strand, within MPMX19_03218at 518.088 kb on + strand, within MPMX19_03218at 518.088 kb on + strand, within MPMX19_03218at 518.089 kb on - strand, within MPMX19_03218at 518.127 kb on + strand, within MPMX19_03218at 518.128 kb on - strand, within MPMX19_03218at 518.128 kb on - strand, within MPMX19_03218at 518.128 kb on - strand, within MPMX19_03218at 518.131 kb on - strand, within MPMX19_03218at 518.131 kb on - strand, within MPMX19_03218at 518.136 kb on + strand, within MPMX19_03218at 518.137 kb on - strand, within MPMX19_03218at 518.137 kb on - strand, within MPMX19_03218at 518.137 kb on - strand, within MPMX19_03218at 518.203 kb on - strand, within MPMX19_03218

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
515,246 + -0.3
515,246 + -2.2
515,247 - -1.4
515,247 - -0.7
515,247 - -1.2
515,273 + -1.0
515,273 + -0.6
515,273 + +0.0
515,273 + +0.1
515,274 - -0.3
515,274 - -0.7
515,503 + MPMX19_03216 0.13 +0.4
515,503 + MPMX19_03216 0.13 +0.7
515,503 + MPMX19_03216 0.13 +0.3
515,503 + MPMX19_03216 0.13 -0.2
515,503 + MPMX19_03216 0.13 +0.0
515,503 + MPMX19_03216 0.13 -1.3
515,504 - MPMX19_03216 0.14 -0.7
515,504 - MPMX19_03216 0.14 +0.4
515,504 - MPMX19_03216 0.14 -1.6
515,504 - MPMX19_03216 0.14 -2.1
515,504 - MPMX19_03216 0.14 +0.6
515,624 + MPMX19_03216 0.29 -1.4
515,624 + MPMX19_03216 0.29 -1.0
515,624 + MPMX19_03216 0.29 -0.4
515,624 + MPMX19_03216 0.29 +0.4
515,624 + MPMX19_03216 0.29 -2.2
515,624 + MPMX19_03216 0.29 -0.1
515,624 + MPMX19_03216 0.29 -1.3
515,624 + MPMX19_03216 0.29 -0.3
515,624 + MPMX19_03216 0.29 -0.1
515,625 - MPMX19_03216 0.30 +0.0
515,701 - MPMX19_03216 0.40 -1.2
515,851 + MPMX19_03216 0.60 +0.4
515,852 - MPMX19_03216 0.60 -0.6
515,852 - MPMX19_03216 0.60 -0.7
516,016 + MPMX19_03216 0.81 -0.2
516,016 + MPMX19_03216 0.81 -0.8
516,016 + MPMX19_03216 0.81 +0.4
516,017 - MPMX19_03216 0.81 -0.7
516,017 - MPMX19_03216 0.81 -0.8
516,017 - MPMX19_03216 0.81 -1.3
516,219 + +0.0
516,220 - -2.7
516,220 - -1.3
516,220 - +0.2
516,414 + MPMX19_03217 0.21 -1.3
516,414 + MPMX19_03217 0.21 -1.9
516,414 + MPMX19_03217 0.21 -0.7
516,414 + MPMX19_03217 0.21 -0.4
516,414 + MPMX19_03217 0.21 -1.3
516,414 + MPMX19_03217 0.21 -1.3
516,415 - MPMX19_03217 0.21 -1.5
516,415 - MPMX19_03217 0.21 -1.2
516,415 - MPMX19_03217 0.21 +0.7
516,415 - MPMX19_03217 0.21 -1.0
516,717 + MPMX19_03217 0.51 -1.0
516,718 - MPMX19_03217 0.51 +0.0
516,718 - MPMX19_03217 0.51 -1.7
516,718 - MPMX19_03217 0.51 -0.2
516,937 - MPMX19_03217 0.73 -1.4
517,052 + MPMX19_03217 0.85 -1.1
517,053 - MPMX19_03217 0.85 -1.0
517,053 - MPMX19_03217 0.85 +0.2
517,053 - MPMX19_03217 0.85 -1.2
517,142 + -0.8
517,143 - +0.2
517,236 + -0.4
517,344 + -2.8
517,365 + +0.4
517,365 + -1.6
517,365 + -0.8
517,365 + +0.4
517,365 + -0.8
517,365 + -1.8
517,365 + -0.6
517,365 + +0.2
517,365 + +1.1
517,365 + -0.8
517,365 + -0.1
517,365 + +0.1
517,365 + +0.3
517,365 + -0.4
517,365 + +0.4
517,365 + -0.6
517,365 + +0.1
517,366 - +0.6
517,366 - +0.9
517,366 - -0.6
517,366 - -0.8
517,366 - -0.8
517,366 - -0.5
517,366 - -1.4
517,366 - -2.2
517,366 - -2.2
517,366 - -1.2
517,547 + -0.5
517,547 + +1.0
517,547 + -2.1
517,548 - -1.6
517,548 - -1.5
517,548 - -0.0
517,587 + +0.7
517,587 + +0.2
517,587 + -0.9
517,588 - +0.3
517,626 + -1.6
517,626 + -2.0
517,627 - -0.5
517,627 - -1.3
517,627 - -0.0
517,627 - -0.1
517,627 - +0.6
517,627 - -2.1
517,715 + -0.1
517,716 - +0.4
517,791 + -0.5
517,792 - -0.8
517,815 + MPMX19_03218 0.11 -0.1
517,815 + MPMX19_03218 0.11 +0.0
517,815 + MPMX19_03218 0.11 +1.0
517,815 + MPMX19_03218 0.11 -0.3
517,816 - MPMX19_03218 0.11 -1.6
517,816 - MPMX19_03218 0.11 +0.6
517,816 - MPMX19_03218 0.11 +0.8
517,816 - MPMX19_03218 0.11 -1.6
517,816 - MPMX19_03218 0.11 -0.4
517,816 - MPMX19_03218 0.11 -0.3
517,816 - MPMX19_03218 0.11 +0.1
517,816 - MPMX19_03218 0.11 -1.3
517,920 + MPMX19_03218 0.21 -1.2
517,920 + MPMX19_03218 0.21 -0.3
517,920 + MPMX19_03218 0.21 +1.3
517,920 + MPMX19_03218 0.21 +0.4
517,920 + MPMX19_03218 0.21 -1.0
517,920 + MPMX19_03218 0.21 -0.8
517,920 + MPMX19_03218 0.21 -0.8
517,921 - MPMX19_03218 0.21 +0.9
517,921 - MPMX19_03218 0.21 +2.6
517,921 - MPMX19_03218 0.21 +0.0
517,921 - MPMX19_03218 0.21 +0.8
517,959 + MPMX19_03218 0.25 +0.2
517,959 + MPMX19_03218 0.25 -1.5
517,960 - MPMX19_03218 0.25 +0.3
517,960 - MPMX19_03218 0.25 -0.7
517,960 - MPMX19_03218 0.25 +0.6
518,086 + MPMX19_03218 0.36 -0.2
518,087 - MPMX19_03218 0.37 -2.2
518,087 - MPMX19_03218 0.37 -1.0
518,088 + MPMX19_03218 0.37 -0.7
518,088 + MPMX19_03218 0.37 -1.5
518,088 + MPMX19_03218 0.37 -2.2
518,089 - MPMX19_03218 0.37 -2.0
518,127 + MPMX19_03218 0.40 +0.7
518,128 - MPMX19_03218 0.40 -0.2
518,128 - MPMX19_03218 0.40 -1.2
518,128 - MPMX19_03218 0.40 -0.9
518,131 - MPMX19_03218 0.41 -0.4
518,131 - MPMX19_03218 0.41 +0.2
518,136 + MPMX19_03218 0.41 -1.5
518,137 - MPMX19_03218 0.41 +0.1
518,137 - MPMX19_03218 0.41 -0.1
518,137 - MPMX19_03218 0.41 -1.8
518,203 - MPMX19_03218 0.47 +1.7

Or see this region's nucleotide sequence