Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03216

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03215 and MPMX19_03216 are separated by 170 nucleotidesMPMX19_03216 and MPMX19_03217 are separated by 47 nucleotides MPMX19_03215: MPMX19_03215 - HTH-type transcriptional regulator PgrR, at 514,364 to 515,230 _03215 MPMX19_03216: MPMX19_03216 - Glucose 1-dehydrogenase, at 515,401 to 516,156 _03216 MPMX19_03217: MPMX19_03217 - 2-haloacrylate reductase, at 516,204 to 517,205 _03217 Position (kb) 515 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 514.481 kb on + strand, within MPMX19_03215at 514.522 kb on + strand, within MPMX19_03215at 514.522 kb on + strand, within MPMX19_03215at 514.522 kb on + strand, within MPMX19_03215at 514.523 kb on - strand, within MPMX19_03215at 514.641 kb on - strand, within MPMX19_03215at 514.641 kb on - strand, within MPMX19_03215at 514.702 kb on + strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.862 kb on + strand, within MPMX19_03215at 514.862 kb on + strand, within MPMX19_03215at 514.863 kb on - strand, within MPMX19_03215at 514.863 kb on - strand, within MPMX19_03215at 515.105 kb on + strand, within MPMX19_03215at 515.246 kb on + strandat 515.246 kb on + strandat 515.247 kb on - strandat 515.247 kb on - strandat 515.247 kb on - strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.274 kb on - strandat 515.274 kb on - strandat 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.625 kb on - strand, within MPMX19_03216at 515.701 kb on - strand, within MPMX19_03216at 515.851 kb on + strand, within MPMX19_03216at 515.852 kb on - strand, within MPMX19_03216at 515.852 kb on - strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.219 kb on + strandat 516.220 kb on - strandat 516.220 kb on - strandat 516.220 kb on - strandat 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.414 kb on + strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.415 kb on - strand, within MPMX19_03217at 516.717 kb on + strand, within MPMX19_03217at 516.718 kb on - strand, within MPMX19_03217at 516.718 kb on - strand, within MPMX19_03217at 516.718 kb on - strand, within MPMX19_03217at 516.937 kb on - strand, within MPMX19_03217at 517.052 kb on + strand, within MPMX19_03217at 517.053 kb on - strand, within MPMX19_03217at 517.053 kb on - strand, within MPMX19_03217at 517.053 kb on - strand, within MPMX19_03217at 517.142 kb on + strandat 517.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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514,481 + MPMX19_03215 0.13 +0.4
514,522 + MPMX19_03215 0.18 -1.3
514,522 + MPMX19_03215 0.18 +0.0
514,522 + MPMX19_03215 0.18 +2.0
514,523 - MPMX19_03215 0.18 +0.6
514,641 - MPMX19_03215 0.32 +0.4
514,641 - MPMX19_03215 0.32 -1.4
514,702 + MPMX19_03215 0.39 +0.6
514,776 - MPMX19_03215 0.48 +0.7
514,776 - MPMX19_03215 0.48 -0.3
514,776 - MPMX19_03215 0.48 -0.3
514,776 - MPMX19_03215 0.48 -1.0
514,776 - MPMX19_03215 0.48 -0.4
514,776 - MPMX19_03215 0.48 +1.4
514,776 - MPMX19_03215 0.48 -1.0
514,800 - MPMX19_03215 0.50 +0.0
514,800 - MPMX19_03215 0.50 -0.3
514,800 - MPMX19_03215 0.50 +0.7
514,800 - MPMX19_03215 0.50 +0.4
514,862 + MPMX19_03215 0.57 -1.0
514,862 + MPMX19_03215 0.57 -0.4
514,863 - MPMX19_03215 0.58 -0.2
514,863 - MPMX19_03215 0.58 -0.8
515,105 + MPMX19_03215 0.85 -0.6
515,246 + -0.3
515,246 + -2.2
515,247 - -1.4
515,247 - -0.7
515,247 - -1.2
515,273 + -1.0
515,273 + -0.6
515,273 + +0.0
515,273 + +0.1
515,274 - -0.3
515,274 - -0.7
515,503 + MPMX19_03216 0.13 +0.4
515,503 + MPMX19_03216 0.13 +0.7
515,503 + MPMX19_03216 0.13 +0.3
515,503 + MPMX19_03216 0.13 -0.2
515,503 + MPMX19_03216 0.13 +0.0
515,503 + MPMX19_03216 0.13 -1.3
515,504 - MPMX19_03216 0.14 -0.7
515,504 - MPMX19_03216 0.14 +0.4
515,504 - MPMX19_03216 0.14 -1.6
515,504 - MPMX19_03216 0.14 -2.1
515,504 - MPMX19_03216 0.14 +0.6
515,624 + MPMX19_03216 0.29 -1.4
515,624 + MPMX19_03216 0.29 -1.0
515,624 + MPMX19_03216 0.29 -0.4
515,624 + MPMX19_03216 0.29 +0.4
515,624 + MPMX19_03216 0.29 -2.2
515,624 + MPMX19_03216 0.29 -0.1
515,624 + MPMX19_03216 0.29 -1.3
515,624 + MPMX19_03216 0.29 -0.3
515,624 + MPMX19_03216 0.29 -0.1
515,625 - MPMX19_03216 0.30 +0.0
515,701 - MPMX19_03216 0.40 -1.2
515,851 + MPMX19_03216 0.60 +0.4
515,852 - MPMX19_03216 0.60 -0.6
515,852 - MPMX19_03216 0.60 -0.7
516,016 + MPMX19_03216 0.81 -0.2
516,016 + MPMX19_03216 0.81 -0.8
516,016 + MPMX19_03216 0.81 +0.4
516,017 - MPMX19_03216 0.81 -0.7
516,017 - MPMX19_03216 0.81 -0.8
516,017 - MPMX19_03216 0.81 -1.3
516,219 + +0.0
516,220 - -2.7
516,220 - -1.3
516,220 - +0.2
516,414 + MPMX19_03217 0.21 -1.3
516,414 + MPMX19_03217 0.21 -1.9
516,414 + MPMX19_03217 0.21 -0.7
516,414 + MPMX19_03217 0.21 -0.4
516,414 + MPMX19_03217 0.21 -1.3
516,414 + MPMX19_03217 0.21 -1.3
516,415 - MPMX19_03217 0.21 -1.5
516,415 - MPMX19_03217 0.21 -1.2
516,415 - MPMX19_03217 0.21 +0.7
516,415 - MPMX19_03217 0.21 -1.0
516,717 + MPMX19_03217 0.51 -1.0
516,718 - MPMX19_03217 0.51 +0.0
516,718 - MPMX19_03217 0.51 -1.7
516,718 - MPMX19_03217 0.51 -0.2
516,937 - MPMX19_03217 0.73 -1.4
517,052 + MPMX19_03217 0.85 -1.1
517,053 - MPMX19_03217 0.85 -1.0
517,053 - MPMX19_03217 0.85 +0.2
517,053 - MPMX19_03217 0.85 -1.2
517,142 + -0.8
517,143 - +0.2

Or see this region's nucleotide sequence