Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03197 and MPMX19_03198 overlap by 4 nucleotides MPMX19_03198 and MPMX19_03199 are separated by 4 nucleotides MPMX19_03199 and MPMX19_03200 are separated by 154 nucleotides MPMX19_03200 and MPMX19_03201 are separated by 588 nucleotides
MPMX19_03197: MPMX19_03197 - hypothetical protein, at 493,120 to 493,443
_03197
MPMX19_03198: MPMX19_03198 - hypothetical protein, at 493,440 to 493,682
_03198
MPMX19_03199: MPMX19_03199 - hypothetical protein, at 493,687 to 494,049
_03199
MPMX19_03200: MPMX19_03200 - Transcriptional regulatory protein LiaR, at 494,204 to 494,851
_03200
MPMX19_03201: MPMX19_03201 - Sensor histidine kinase RcsC, at 495,440 to 500,074
_03201
Position (kb) 494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.425 kb on - strand at 493.548 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.635 kb on - strand, within MPMX19_03198 at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.860 kb on + strand, within MPMX19_03199 at 493.860 kb on + strand, within MPMX19_03199 at 493.861 kb on - strand, within MPMX19_03199 at 493.861 kb on - strand, within MPMX19_03199 at 493.909 kb on + strand, within MPMX19_03199 at 493.909 kb on + strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.977 kb on - strand, within MPMX19_03199 at 494.107 kb on - strand at 494.111 kb on - strand at 494.111 kb on - strand at 494.111 kb on - strand at 494.144 kb on + strand at 494.195 kb on + strand at 494.195 kb on + strand at 494.195 kb on + strand at 494.229 kb on + strand at 494.229 kb on + strand at 494.229 kb on + strand at 494.230 kb on - strand at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.455 kb on + strand, within MPMX19_03200 at 494.455 kb on + strand, within MPMX19_03200 at 494.456 kb on - strand, within MPMX19_03200 at 494.456 kb on - strand, within MPMX19_03200 at 494.456 kb on - strand, within MPMX19_03200 at 494.663 kb on - strand, within MPMX19_03200 at 495.124 kb on - strand at 495.124 kb on - strand at 495.132 kb on + strand at 495.162 kb on - strand at 495.322 kb on - strand at 495.322 kb on - strand at 495.326 kb on + strand at 495.334 kb on + strand at 495.395 kb on + strand at 495.396 kb on - strand at 495.396 kb on - strand at 495.422 kb on + strand at 495.422 kb on + strand at 495.422 kb on + strand at 495.423 kb on - strand at 495.576 kb on + strand at 495.577 kb on - strand at 495.577 kb on - strand at 495.589 kb on + strand at 495.590 kb on - strand at 495.590 kb on - strand at 495.590 kb on - strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.743 kb on + strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand at 495.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 493,365 + MPMX19_03197 0.76 +0.0 493,365 + MPMX19_03197 0.76 +0.0 493,365 + MPMX19_03197 0.76 -1.4 493,365 + MPMX19_03197 0.76 +0.9 493,366 - MPMX19_03197 0.76 -0.8 493,366 - MPMX19_03197 0.76 -1.5 493,425 - -0.6 493,548 + MPMX19_03198 0.44 -1.3 493,583 + MPMX19_03198 0.59 +0.2 493,583 + MPMX19_03198 0.59 -1.6 493,584 - MPMX19_03198 0.59 -1.0 493,584 - MPMX19_03198 0.59 -0.3 493,584 - MPMX19_03198 0.59 +0.0 493,584 - MPMX19_03198 0.59 +0.0 493,584 - MPMX19_03198 0.59 -0.8 493,584 - MPMX19_03198 0.59 -1.0 493,584 - MPMX19_03198 0.59 -1.1 493,584 - MPMX19_03198 0.59 +0.0 493,634 + MPMX19_03198 0.80 +0.0 493,634 + MPMX19_03198 0.80 +1.2 493,634 + MPMX19_03198 0.80 +1.4 493,634 + MPMX19_03198 0.80 +0.2 493,635 - MPMX19_03198 0.80 -0.4 493,694 + -0.8 493,694 + -0.3 493,694 + -1.0 493,694 + -1.6 493,694 + +1.0 493,694 + +0.5 493,694 + -0.4 493,694 + -0.6 493,694 + -0.8 493,695 - -2.2 493,695 - +0.4 493,695 - -1.0 493,695 - -1.4 493,695 - -1.5 493,695 - -0.5 493,705 + -1.0 493,705 + -0.6 493,705 + -1.4 493,705 + -1.7 493,705 + -0.3 493,705 + -0.7 493,705 + +0.5 493,705 + -1.7 493,705 + -0.4 493,705 + -0.7 493,705 + -1.3 493,706 - +1.0 493,706 - +0.2 493,706 - -1.9 493,706 - -0.2 493,707 + -0.3 493,707 + +0.1 493,707 + +0.2 493,707 + -1.3 493,707 + -1.4 493,707 + -0.3 493,707 + -1.4 493,707 + -2.1 493,707 + -1.3 493,708 - -1.0 493,708 - -1.5 493,708 - -0.8 493,708 - +0.4 493,708 - -0.1 493,708 - -1.1 493,708 - +0.1 493,708 - -1.2 493,708 - -0.7 493,805 + MPMX19_03199 0.33 -2.0 493,805 + MPMX19_03199 0.33 +0.8 493,805 + MPMX19_03199 0.33 -0.6 493,805 + MPMX19_03199 0.33 -0.1 493,805 + MPMX19_03199 0.33 -1.7 493,806 - MPMX19_03199 0.33 -2.4 493,806 - MPMX19_03199 0.33 +0.7 493,806 - MPMX19_03199 0.33 -1.2 493,806 - MPMX19_03199 0.33 -1.6 493,806 - MPMX19_03199 0.33 -0.8 493,806 - MPMX19_03199 0.33 -0.7 493,806 - MPMX19_03199 0.33 -1.2 493,806 - MPMX19_03199 0.33 -0.8 493,806 - MPMX19_03199 0.33 -0.3 493,860 + MPMX19_03199 0.48 -0.8 493,860 + MPMX19_03199 0.48 -0.3 493,861 - MPMX19_03199 0.48 -0.4 493,861 - MPMX19_03199 0.48 -2.2 493,909 + MPMX19_03199 0.61 -0.9 493,909 + MPMX19_03199 0.61 -1.3 493,910 - MPMX19_03199 0.61 -0.3 493,910 - MPMX19_03199 0.61 -3.2 493,910 - MPMX19_03199 0.61 -1.8 493,977 - MPMX19_03199 0.80 -0.6 494,107 - -1.8 494,111 - -0.5 494,111 - -1.1 494,111 - +0.6 494,144 + -2.6 494,195 + +0.8 494,195 + -1.9 494,195 + -0.4 494,229 + -2.1 494,229 + +0.0 494,229 + -0.4 494,230 - -1.1 494,449 + MPMX19_03200 0.38 -0.2 494,449 + MPMX19_03200 0.38 -2.1 494,449 + MPMX19_03200 0.38 -2.1 494,449 + MPMX19_03200 0.38 -0.7 494,449 + MPMX19_03200 0.38 +0.3 494,450 - MPMX19_03200 0.38 +0.0 494,450 - MPMX19_03200 0.38 -0.7 494,450 - MPMX19_03200 0.38 -0.1 494,450 - MPMX19_03200 0.38 -0.1 494,450 - MPMX19_03200 0.38 +0.0 494,450 - MPMX19_03200 0.38 -0.4 494,450 - MPMX19_03200 0.38 -1.8 494,450 - MPMX19_03200 0.38 +0.0 494,450 - MPMX19_03200 0.38 -1.6 494,450 - MPMX19_03200 0.38 -1.3 494,455 + MPMX19_03200 0.39 -1.6 494,455 + MPMX19_03200 0.39 -0.8 494,456 - MPMX19_03200 0.39 +0.2 494,456 - MPMX19_03200 0.39 -0.5 494,456 - MPMX19_03200 0.39 -0.8 494,663 - MPMX19_03200 0.71 -0.5 495,124 - -0.8 495,124 - -0.1 495,132 + -1.3 495,162 - +0.1 495,322 - -0.6 495,322 - -0.8 495,326 + -2.6 495,334 + -1.4 495,395 + -1.0 495,396 - +0.0 495,396 - -1.0 495,422 + -2.0 495,422 + +0.1 495,422 + -1.1 495,423 - -1.6 495,576 + +0.2 495,577 - -0.8 495,577 - -0.6 495,589 + -1.7 495,590 - -0.3 495,590 - -0.5 495,590 - +1.2 495,743 + -1.4 495,743 + -1.3 495,743 + -0.5 495,743 + -0.3 495,743 + -0.8 495,743 + -0.0 495,743 + -0.4 495,743 + +0.2 495,743 + -0.1 495,743 + -1.2 495,743 + -0.3 495,743 + -0.3 495,743 + -0.9 495,743 + -1.7 495,743 + -1.1 495,743 + +0.2 495,743 + -0.8 495,743 + -0.4 495,743 + -1.2 495,743 + -1.0 495,743 + -2.7 495,743 + -1.4 495,744 - -1.1 495,744 - -1.8 495,744 - +0.1 495,744 - -1.7 495,744 - +0.7 495,744 - -1.1 495,744 - +0.2 495,744 - -1.4 495,744 - -0.8 495,744 - +0.4 495,744 - -1.4 495,744 - -0.1 495,744 - -1.5 495,744 - -1.9 495,744 - -0.9
Or see this region's nucleotide sequence