Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03199

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03196 and MPMX19_03197 are separated by 363 nucleotidesMPMX19_03197 and MPMX19_03198 overlap by 4 nucleotidesMPMX19_03198 and MPMX19_03199 are separated by 4 nucleotidesMPMX19_03199 and MPMX19_03200 are separated by 154 nucleotides MPMX19_03196: MPMX19_03196 - hypothetical protein, at 492,016 to 492,756 _03196 MPMX19_03197: MPMX19_03197 - hypothetical protein, at 493,120 to 493,443 _03197 MPMX19_03198: MPMX19_03198 - hypothetical protein, at 493,440 to 493,682 _03198 MPMX19_03199: MPMX19_03199 - hypothetical protein, at 493,687 to 494,049 _03199 MPMX19_03200: MPMX19_03200 - Transcriptional regulatory protein LiaR, at 494,204 to 494,851 _03200 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1at 492.816 kb on + strandat 492.816 kb on + strandat 492.984 kb on + strandat 493.119 kb on + strandat 493.120 kb on - strandat 493.120 kb on - strandat 493.155 kb on + strand, within MPMX19_03197at 493.155 kb on + strand, within MPMX19_03197at 493.156 kb on - strand, within MPMX19_03197at 493.198 kb on + strand, within MPMX19_03197at 493.198 kb on + strand, within MPMX19_03197at 493.365 kb on + strand, within MPMX19_03197at 493.365 kb on + strand, within MPMX19_03197at 493.365 kb on + strand, within MPMX19_03197at 493.365 kb on + strand, within MPMX19_03197at 493.366 kb on - strand, within MPMX19_03197at 493.366 kb on - strand, within MPMX19_03197at 493.425 kb on - strandat 493.548 kb on + strand, within MPMX19_03198at 493.583 kb on + strand, within MPMX19_03198at 493.583 kb on + strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.584 kb on - strand, within MPMX19_03198at 493.634 kb on + strand, within MPMX19_03198at 493.634 kb on + strand, within MPMX19_03198at 493.634 kb on + strand, within MPMX19_03198at 493.634 kb on + strand, within MPMX19_03198at 493.635 kb on - strand, within MPMX19_03198at 493.694 kb on + strandat 493.694 kb on + strandat 493.694 kb on + strandat 493.694 kb on + strandat 493.694 kb on + strandat 493.694 kb on + strandat 493.694 kb on + strandat 493.694 kb on + strandat 493.694 kb on + strandat 493.695 kb on - strandat 493.695 kb on - strandat 493.695 kb on - strandat 493.695 kb on - strandat 493.695 kb on - strandat 493.695 kb on - strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.705 kb on + strandat 493.706 kb on - strandat 493.706 kb on - strandat 493.706 kb on - strandat 493.706 kb on - strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.707 kb on + strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.805 kb on + strand, within MPMX19_03199at 493.805 kb on + strand, within MPMX19_03199at 493.805 kb on + strand, within MPMX19_03199at 493.805 kb on + strand, within MPMX19_03199at 493.805 kb on + strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.806 kb on - strand, within MPMX19_03199at 493.860 kb on + strand, within MPMX19_03199at 493.860 kb on + strand, within MPMX19_03199at 493.861 kb on - strand, within MPMX19_03199at 493.861 kb on - strand, within MPMX19_03199at 493.909 kb on + strand, within MPMX19_03199at 493.909 kb on + strand, within MPMX19_03199at 493.910 kb on - strand, within MPMX19_03199at 493.910 kb on - strand, within MPMX19_03199at 493.910 kb on - strand, within MPMX19_03199at 493.977 kb on - strand, within MPMX19_03199at 494.107 kb on - strandat 494.111 kb on - strandat 494.111 kb on - strandat 494.111 kb on - strandat 494.144 kb on + strandat 494.195 kb on + strandat 494.195 kb on + strandat 494.195 kb on + strandat 494.229 kb on + strandat 494.229 kb on + strandat 494.229 kb on + strandat 494.230 kb on - strandat 494.449 kb on + strand, within MPMX19_03200at 494.449 kb on + strand, within MPMX19_03200at 494.449 kb on + strand, within MPMX19_03200at 494.449 kb on + strand, within MPMX19_03200at 494.449 kb on + strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.450 kb on - strand, within MPMX19_03200at 494.455 kb on + strand, within MPMX19_03200at 494.455 kb on + strand, within MPMX19_03200at 494.456 kb on - strand, within MPMX19_03200at 494.456 kb on - strand, within MPMX19_03200at 494.456 kb on - strand, within MPMX19_03200at 494.663 kb on - strand, within MPMX19_03200

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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492,816 + -1.7
492,816 + -0.3
492,984 + -0.8
493,119 + +0.0
493,120 - -1.3
493,120 - -1.9
493,155 + MPMX19_03197 0.11 +0.3
493,155 + MPMX19_03197 0.11 -1.7
493,156 - MPMX19_03197 0.11 -0.3
493,198 + MPMX19_03197 0.24 -1.3
493,198 + MPMX19_03197 0.24 -0.5
493,365 + MPMX19_03197 0.76 +0.0
493,365 + MPMX19_03197 0.76 +0.0
493,365 + MPMX19_03197 0.76 -1.4
493,365 + MPMX19_03197 0.76 +0.9
493,366 - MPMX19_03197 0.76 -0.8
493,366 - MPMX19_03197 0.76 -1.5
493,425 - -0.6
493,548 + MPMX19_03198 0.44 -1.3
493,583 + MPMX19_03198 0.59 +0.2
493,583 + MPMX19_03198 0.59 -1.6
493,584 - MPMX19_03198 0.59 -1.0
493,584 - MPMX19_03198 0.59 -0.3
493,584 - MPMX19_03198 0.59 +0.0
493,584 - MPMX19_03198 0.59 +0.0
493,584 - MPMX19_03198 0.59 -0.8
493,584 - MPMX19_03198 0.59 -1.0
493,584 - MPMX19_03198 0.59 -1.1
493,584 - MPMX19_03198 0.59 +0.0
493,634 + MPMX19_03198 0.80 +0.0
493,634 + MPMX19_03198 0.80 +1.2
493,634 + MPMX19_03198 0.80 +1.4
493,634 + MPMX19_03198 0.80 +0.2
493,635 - MPMX19_03198 0.80 -0.4
493,694 + -0.8
493,694 + -0.3
493,694 + -1.0
493,694 + -1.6
493,694 + +1.0
493,694 + +0.5
493,694 + -0.4
493,694 + -0.6
493,694 + -0.8
493,695 - -2.2
493,695 - +0.4
493,695 - -1.0
493,695 - -1.4
493,695 - -1.5
493,695 - -0.5
493,705 + -1.0
493,705 + -0.6
493,705 + -1.4
493,705 + -1.7
493,705 + -0.3
493,705 + -0.7
493,705 + +0.5
493,705 + -1.7
493,705 + -0.4
493,705 + -0.7
493,705 + -1.3
493,706 - +1.0
493,706 - +0.2
493,706 - -1.9
493,706 - -0.2
493,707 + -0.3
493,707 + +0.1
493,707 + +0.2
493,707 + -1.3
493,707 + -1.4
493,707 + -0.3
493,707 + -1.4
493,707 + -2.1
493,707 + -1.3
493,708 - -1.0
493,708 - -1.5
493,708 - -0.8
493,708 - +0.4
493,708 - -0.1
493,708 - -1.1
493,708 - +0.1
493,708 - -1.2
493,708 - -0.7
493,805 + MPMX19_03199 0.33 -2.0
493,805 + MPMX19_03199 0.33 +0.8
493,805 + MPMX19_03199 0.33 -0.6
493,805 + MPMX19_03199 0.33 -0.1
493,805 + MPMX19_03199 0.33 -1.7
493,806 - MPMX19_03199 0.33 -2.4
493,806 - MPMX19_03199 0.33 +0.7
493,806 - MPMX19_03199 0.33 -1.2
493,806 - MPMX19_03199 0.33 -1.6
493,806 - MPMX19_03199 0.33 -0.8
493,806 - MPMX19_03199 0.33 -0.7
493,806 - MPMX19_03199 0.33 -1.2
493,806 - MPMX19_03199 0.33 -0.8
493,806 - MPMX19_03199 0.33 -0.3
493,860 + MPMX19_03199 0.48 -0.8
493,860 + MPMX19_03199 0.48 -0.3
493,861 - MPMX19_03199 0.48 -0.4
493,861 - MPMX19_03199 0.48 -2.2
493,909 + MPMX19_03199 0.61 -0.9
493,909 + MPMX19_03199 0.61 -1.3
493,910 - MPMX19_03199 0.61 -0.3
493,910 - MPMX19_03199 0.61 -3.2
493,910 - MPMX19_03199 0.61 -1.8
493,977 - MPMX19_03199 0.80 -0.6
494,107 - -1.8
494,111 - -0.5
494,111 - -1.1
494,111 - +0.6
494,144 + -2.6
494,195 + +0.8
494,195 + -1.9
494,195 + -0.4
494,229 + -2.1
494,229 + +0.0
494,229 + -0.4
494,230 - -1.1
494,449 + MPMX19_03200 0.38 -0.2
494,449 + MPMX19_03200 0.38 -2.1
494,449 + MPMX19_03200 0.38 -2.1
494,449 + MPMX19_03200 0.38 -0.7
494,449 + MPMX19_03200 0.38 +0.3
494,450 - MPMX19_03200 0.38 +0.0
494,450 - MPMX19_03200 0.38 -0.7
494,450 - MPMX19_03200 0.38 -0.1
494,450 - MPMX19_03200 0.38 -0.1
494,450 - MPMX19_03200 0.38 +0.0
494,450 - MPMX19_03200 0.38 -0.4
494,450 - MPMX19_03200 0.38 -1.8
494,450 - MPMX19_03200 0.38 +0.0
494,450 - MPMX19_03200 0.38 -1.6
494,450 - MPMX19_03200 0.38 -1.3
494,455 + MPMX19_03200 0.39 -1.6
494,455 + MPMX19_03200 0.39 -0.8
494,456 - MPMX19_03200 0.39 +0.2
494,456 - MPMX19_03200 0.39 -0.5
494,456 - MPMX19_03200 0.39 -0.8
494,663 - MPMX19_03200 0.71 -0.5

Or see this region's nucleotide sequence