Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03196 and MPMX19_03197 are separated by 363 nucleotides MPMX19_03197 and MPMX19_03198 overlap by 4 nucleotides MPMX19_03198 and MPMX19_03199 are separated by 4 nucleotides MPMX19_03199 and MPMX19_03200 are separated by 154 nucleotides
MPMX19_03196: MPMX19_03196 - hypothetical protein, at 492,016 to 492,756
_03196
MPMX19_03197: MPMX19_03197 - hypothetical protein, at 493,120 to 493,443
_03197
MPMX19_03198: MPMX19_03198 - hypothetical protein, at 493,440 to 493,682
_03198
MPMX19_03199: MPMX19_03199 - hypothetical protein, at 493,687 to 494,049
_03199
MPMX19_03200: MPMX19_03200 - Transcriptional regulatory protein LiaR, at 494,204 to 494,851
_03200
Position (kb) 493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196 at 492.488 kb on + strand, within MPMX19_03196 at 492.489 kb on - strand, within MPMX19_03196 at 492.816 kb on + strand at 492.816 kb on + strand at 492.984 kb on + strand at 493.119 kb on + strand at 493.120 kb on - strand at 493.120 kb on - strand at 493.155 kb on + strand, within MPMX19_03197 at 493.155 kb on + strand, within MPMX19_03197 at 493.156 kb on - strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.425 kb on - strand at 493.548 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.635 kb on - strand, within MPMX19_03198 at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.860 kb on + strand, within MPMX19_03199 at 493.860 kb on + strand, within MPMX19_03199 at 493.861 kb on - strand, within MPMX19_03199 at 493.861 kb on - strand, within MPMX19_03199 at 493.909 kb on + strand, within MPMX19_03199 at 493.909 kb on + strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.977 kb on - strand, within MPMX19_03199 at 494.107 kb on - strand at 494.111 kb on - strand at 494.111 kb on - strand at 494.111 kb on - strand at 494.144 kb on + strand at 494.195 kb on + strand at 494.195 kb on + strand at 494.195 kb on + strand at 494.229 kb on + strand at 494.229 kb on + strand at 494.229 kb on + strand at 494.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 492,196 + MPMX19_03196 0.24 -0.6 492,196 + MPMX19_03196 0.24 -0.8 492,196 + MPMX19_03196 0.24 +1.7 492,196 + MPMX19_03196 0.24 +0.3 492,197 - MPMX19_03196 0.24 +0.6 492,197 - MPMX19_03196 0.24 -1.9 492,488 + MPMX19_03196 0.64 -0.3 492,489 - MPMX19_03196 0.64 -0.1 492,816 + -1.7 492,816 + -0.3 492,984 + -0.8 493,119 + +0.0 493,120 - -1.3 493,120 - -1.9 493,155 + MPMX19_03197 0.11 +0.3 493,155 + MPMX19_03197 0.11 -1.7 493,156 - MPMX19_03197 0.11 -0.3 493,198 + MPMX19_03197 0.24 -1.3 493,198 + MPMX19_03197 0.24 -0.5 493,365 + MPMX19_03197 0.76 +0.0 493,365 + MPMX19_03197 0.76 +0.0 493,365 + MPMX19_03197 0.76 -1.4 493,365 + MPMX19_03197 0.76 +0.9 493,366 - MPMX19_03197 0.76 -0.8 493,366 - MPMX19_03197 0.76 -1.5 493,425 - -0.6 493,548 + MPMX19_03198 0.44 -1.3 493,583 + MPMX19_03198 0.59 +0.2 493,583 + MPMX19_03198 0.59 -1.6 493,584 - MPMX19_03198 0.59 -1.0 493,584 - MPMX19_03198 0.59 -0.3 493,584 - MPMX19_03198 0.59 +0.0 493,584 - MPMX19_03198 0.59 +0.0 493,584 - MPMX19_03198 0.59 -0.8 493,584 - MPMX19_03198 0.59 -1.0 493,584 - MPMX19_03198 0.59 -1.1 493,584 - MPMX19_03198 0.59 +0.0 493,634 + MPMX19_03198 0.80 +0.0 493,634 + MPMX19_03198 0.80 +1.2 493,634 + MPMX19_03198 0.80 +1.4 493,634 + MPMX19_03198 0.80 +0.2 493,635 - MPMX19_03198 0.80 -0.4 493,694 + -0.8 493,694 + -0.3 493,694 + -1.0 493,694 + -1.6 493,694 + +1.0 493,694 + +0.5 493,694 + -0.4 493,694 + -0.6 493,694 + -0.8 493,695 - -2.2 493,695 - +0.4 493,695 - -1.0 493,695 - -1.4 493,695 - -1.5 493,695 - -0.5 493,705 + -1.0 493,705 + -0.6 493,705 + -1.4 493,705 + -1.7 493,705 + -0.3 493,705 + -0.7 493,705 + +0.5 493,705 + -1.7 493,705 + -0.4 493,705 + -0.7 493,705 + -1.3 493,706 - +1.0 493,706 - +0.2 493,706 - -1.9 493,706 - -0.2 493,707 + -0.3 493,707 + +0.1 493,707 + +0.2 493,707 + -1.3 493,707 + -1.4 493,707 + -0.3 493,707 + -1.4 493,707 + -2.1 493,707 + -1.3 493,708 - -1.0 493,708 - -1.5 493,708 - -0.8 493,708 - +0.4 493,708 - -0.1 493,708 - -1.1 493,708 - +0.1 493,708 - -1.2 493,708 - -0.7 493,805 + MPMX19_03199 0.33 -2.0 493,805 + MPMX19_03199 0.33 +0.8 493,805 + MPMX19_03199 0.33 -0.6 493,805 + MPMX19_03199 0.33 -0.1 493,805 + MPMX19_03199 0.33 -1.7 493,806 - MPMX19_03199 0.33 -2.4 493,806 - MPMX19_03199 0.33 +0.7 493,806 - MPMX19_03199 0.33 -1.2 493,806 - MPMX19_03199 0.33 -1.6 493,806 - MPMX19_03199 0.33 -0.8 493,806 - MPMX19_03199 0.33 -0.7 493,806 - MPMX19_03199 0.33 -1.2 493,806 - MPMX19_03199 0.33 -0.8 493,806 - MPMX19_03199 0.33 -0.3 493,860 + MPMX19_03199 0.48 -0.8 493,860 + MPMX19_03199 0.48 -0.3 493,861 - MPMX19_03199 0.48 -0.4 493,861 - MPMX19_03199 0.48 -2.2 493,909 + MPMX19_03199 0.61 -0.9 493,909 + MPMX19_03199 0.61 -1.3 493,910 - MPMX19_03199 0.61 -0.3 493,910 - MPMX19_03199 0.61 -3.2 493,910 - MPMX19_03199 0.61 -1.8 493,977 - MPMX19_03199 0.80 -0.6 494,107 - -1.8 494,111 - -0.5 494,111 - -1.1 494,111 - +0.6 494,144 + -2.6 494,195 + +0.8 494,195 + -1.9 494,195 + -0.4 494,229 + -2.1 494,229 + +0.0 494,229 + -0.4 494,230 - -1.1
Or see this region's nucleotide sequence