Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03191 and MPMX19_03192 are separated by 186 nucleotides MPMX19_03192 and MPMX19_03193 are separated by 87 nucleotides MPMX19_03193 and MPMX19_03194 are separated by 49 nucleotides MPMX19_03194 and MPMX19_03195 are separated by 278 nucleotides MPMX19_03195 and MPMX19_03196 are separated by 68 nucleotides
MPMX19_03191: MPMX19_03191 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 487,250 to 490,405
_03191
MPMX19_03192: MPMX19_03192 - hypothetical protein, at 490,592 to 490,789
_03192
MPMX19_03193: MPMX19_03193 - hypothetical protein, at 490,877 to 491,161
_03193
MPMX19_03194: MPMX19_03194 - hypothetical protein, at 491,211 to 491,366
_03194
MPMX19_03195: MPMX19_03195 - hypothetical protein, at 491,645 to 491,947
_03195
MPMX19_03196: MPMX19_03196 - hypothetical protein, at 492,016 to 492,756
_03196
Position (kb) 491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 490.494 kb on + strand at 490.495 kb on - strand at 490.495 kb on - strand at 490.601 kb on - strand at 490.601 kb on - strand at 490.601 kb on - strand at 490.601 kb on - strand at 490.601 kb on - strand at 490.636 kb on - strand, within MPMX19_03192 at 490.778 kb on + strand at 490.778 kb on + strand at 490.778 kb on + strand at 490.779 kb on - strand at 490.810 kb on - strand at 491.014 kb on - strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.123 kb on + strand, within MPMX19_03193 at 491.123 kb on + strand, within MPMX19_03193 at 491.212 kb on + strand at 491.213 kb on - strand at 491.275 kb on + strand, within MPMX19_03194 at 491.275 kb on + strand, within MPMX19_03194 at 491.275 kb on + strand, within MPMX19_03194 at 491.399 kb on - strand at 491.455 kb on - strand at 491.498 kb on + strand at 491.498 kb on + strand at 491.498 kb on + strand at 491.499 kb on - strand at 491.524 kb on + strand at 491.598 kb on + strand at 491.599 kb on - strand at 491.681 kb on + strand, within MPMX19_03195 at 491.681 kb on + strand, within MPMX19_03195 at 491.682 kb on - strand, within MPMX19_03195 at 491.682 kb on - strand, within MPMX19_03195 at 491.961 kb on - strand at 491.972 kb on + strand at 491.972 kb on + strand at 491.972 kb on + strand at 491.982 kb on - strand at 491.982 kb on - strand at 492.040 kb on + strand at 492.040 kb on + strand at 492.040 kb on + strand at 492.041 kb on - strand at 492.041 kb on - strand at 492.041 kb on - strand at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 490,494 + -1.6 490,495 - -1.5 490,495 - -1.6 490,601 - +0.6 490,601 - -0.4 490,601 - +0.7 490,601 - -0.8 490,601 - -1.3 490,636 - MPMX19_03192 0.22 -0.8 490,778 + -0.7 490,778 + +0.7 490,778 + -0.0 490,779 - -0.9 490,810 - +1.0 491,014 - MPMX19_03193 0.48 +0.2 491,064 + MPMX19_03193 0.66 -1.4 491,064 + MPMX19_03193 0.66 -0.4 491,064 + MPMX19_03193 0.66 -0.1 491,064 + MPMX19_03193 0.66 -1.9 491,064 + MPMX19_03193 0.66 +0.1 491,064 + MPMX19_03193 0.66 -0.5 491,064 + MPMX19_03193 0.66 -0.3 491,064 + MPMX19_03193 0.66 -0.6 491,064 + MPMX19_03193 0.66 +0.7 491,064 + MPMX19_03193 0.66 -0.3 491,065 - MPMX19_03193 0.66 -1.6 491,065 - MPMX19_03193 0.66 -0.4 491,065 - MPMX19_03193 0.66 +0.2 491,065 - MPMX19_03193 0.66 -0.0 491,065 - MPMX19_03193 0.66 -0.8 491,065 - MPMX19_03193 0.66 -0.8 491,065 - MPMX19_03193 0.66 -2.8 491,065 - MPMX19_03193 0.66 -2.0 491,123 + MPMX19_03193 0.86 -0.9 491,123 + MPMX19_03193 0.86 -0.3 491,212 + -0.8 491,213 - -0.0 491,275 + MPMX19_03194 0.41 -1.1 491,275 + MPMX19_03194 0.41 -1.5 491,275 + MPMX19_03194 0.41 -2.6 491,399 - -0.3 491,455 - -0.4 491,498 + -0.9 491,498 + -0.2 491,498 + -1.0 491,499 - -0.2 491,524 + -0.2 491,598 + +0.0 491,599 - -1.5 491,681 + MPMX19_03195 0.12 -0.5 491,681 + MPMX19_03195 0.12 +1.8 491,682 - MPMX19_03195 0.12 -1.7 491,682 - MPMX19_03195 0.12 -0.8 491,961 - -0.6 491,972 + -2.6 491,972 + -1.0 491,972 + -1.8 491,982 - -2.7 491,982 - -1.0 492,040 + -0.4 492,040 + -1.3 492,040 + -0.8 492,041 - -0.4 492,041 - -2.1 492,041 - -1.5 492,196 + MPMX19_03196 0.24 -0.6 492,196 + MPMX19_03196 0.24 -0.8 492,196 + MPMX19_03196 0.24 +1.7 492,196 + MPMX19_03196 0.24 +0.3 492,197 - MPMX19_03196 0.24 +0.6 492,197 - MPMX19_03196 0.24 -1.9
Or see this region's nucleotide sequence