Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03183 and MPMX19_03184 are separated by 98 nucleotides MPMX19_03184 and MPMX19_03185 are separated by 27 nucleotides
MPMX19_03183: MPMX19_03183 - hypothetical protein, at 478,241 to 478,546
_03183
MPMX19_03184: MPMX19_03184 - hypothetical protein, at 478,645 to 479,001
_03184
MPMX19_03185: MPMX19_03185 - IS3 family transposase ISMdi5, at 479,029 to 479,889
_03185
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.727 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.761 kb on - strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.036 kb on - strand at 478.036 kb on - strand at 478.101 kb on + strand at 478.147 kb on - strand at 478.147 kb on - strand at 478.233 kb on + strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.861 kb on + strand, within MPMX19_03184 at 478.861 kb on + strand, within MPMX19_03184 at 478.861 kb on + strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 479.041 kb on + strand at 479.041 kb on + strand at 479.041 kb on + strand at 479.041 kb on + strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.066 kb on + strand at 479.066 kb on + strand at 479.067 kb on - strand at 479.067 kb on - strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.102 kb on + strand at 479.102 kb on + strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.114 kb on + strand at 479.114 kb on + strand at 479.115 kb on - strand, within MPMX19_03185 at 479.115 kb on - strand, within MPMX19_03185 at 479.160 kb on + strand, within MPMX19_03185 at 479.160 kb on + strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.220 kb on - strand, within MPMX19_03185 at 479.220 kb on - strand, within MPMX19_03185 at 479.279 kb on + strand, within MPMX19_03185 at 479.280 kb on - strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.392 kb on - strand, within MPMX19_03185 at 479.392 kb on - strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.705 kb on + strand, within MPMX19_03185 at 479.706 kb on - strand, within MPMX19_03185 at 479.706 kb on - strand, within MPMX19_03185 at 479.706 kb on - strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.801 kb on + strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.802 kb on - strand, within MPMX19_03185 at 479.805 kb on - strand at 479.805 kb on - strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.838 kb on + strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand at 479.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 477,727 + +0.1 477,760 + -0.7 477,760 + +0.0 477,760 + +0.1 477,760 + +0.5 477,761 - +0.2 477,854 + -0.3 477,854 + -2.3 477,854 + -1.7 477,855 - -1.0 477,855 - -0.6 477,855 - -1.3 477,937 + -0.6 477,937 + -1.1 477,937 + -0.4 477,938 - +0.2 477,938 - -1.0 477,938 - +0.8 477,938 - -1.1 478,035 + -1.7 478,035 + +0.0 478,035 + -1.1 478,035 + -0.4 478,036 - +0.4 478,036 - +1.4 478,101 + -2.7 478,147 - -0.1 478,147 - -0.3 478,233 + -1.1 478,234 - -0.1 478,234 - -0.7 478,234 - -1.4 478,234 - -0.1 478,234 - -1.4 478,234 - -2.0 478,234 - -2.3 478,234 - -0.4 478,234 - -0.3 478,254 - +0.4 478,254 - -0.8 478,254 - -0.6 478,254 - -1.4 478,254 - -1.1 478,535 + -0.0 478,535 + -0.1 478,535 + -0.3 478,535 + -1.7 478,535 + +1.0 478,535 + -0.1 478,535 + -1.3 478,535 + +1.3 478,535 + +0.2 478,535 + -0.3 478,536 - -0.1 478,536 - -1.1 478,536 - -0.4 478,536 - -0.1 478,536 - +0.4 478,536 - +0.0 478,536 - -0.8 478,536 - -0.9 478,536 - -1.9 478,536 - -0.8 478,536 - +0.3 478,536 - -0.2 478,536 - -2.4 478,861 + MPMX19_03184 0.61 -1.4 478,861 + MPMX19_03184 0.61 +0.4 478,861 + MPMX19_03184 0.61 -2.0 478,862 - MPMX19_03184 0.61 -0.6 478,862 - MPMX19_03184 0.61 -0.6 478,862 - MPMX19_03184 0.61 -0.9 478,862 - MPMX19_03184 0.61 +0.2 478,862 - MPMX19_03184 0.61 -1.3 478,869 + MPMX19_03184 0.63 +0.6 478,869 + MPMX19_03184 0.63 -1.9 478,869 + MPMX19_03184 0.63 -0.3 478,870 - MPMX19_03184 0.63 +0.5 478,870 - MPMX19_03184 0.63 -1.0 478,870 - MPMX19_03184 0.63 -1.7 478,870 - MPMX19_03184 0.63 -1.1 479,041 + -0.8 479,041 + +0.2 479,041 + -0.4 479,041 + -0.8 479,042 - +0.6 479,042 - -0.3 479,042 - -0.6 479,042 - -1.6 479,042 - +0.7 479,042 - -1.4 479,042 - -1.6 479,042 - +1.3 479,066 + -0.3 479,066 + +0.2 479,067 - -0.7 479,067 - -1.8 479,099 + -0.8 479,099 + -0.1 479,099 + -1.1 479,099 + -0.6 479,100 - -0.8 479,100 - +0.1 479,100 - -0.6 479,100 - -0.7 479,100 - -0.6 479,102 + -2.4 479,102 + -1.3 479,103 - -0.6 479,103 - -1.1 479,103 - +0.6 479,103 - -0.8 479,103 - +0.0 479,103 - -1.9 479,114 + +0.7 479,114 + -3.3 479,115 - MPMX19_03185 0.10 -1.1 479,115 - MPMX19_03185 0.10 -0.7 479,160 + MPMX19_03185 0.15 +0.0 479,160 + MPMX19_03185 0.15 -1.3 479,161 - MPMX19_03185 0.15 +0.4 479,161 - MPMX19_03185 0.15 -1.5 479,161 - MPMX19_03185 0.15 +0.0 479,214 + MPMX19_03185 0.21 -0.8 479,214 + MPMX19_03185 0.21 +0.7 479,214 + MPMX19_03185 0.21 -2.3 479,214 + MPMX19_03185 0.21 -1.1 479,214 + MPMX19_03185 0.21 -1.3 479,214 + MPMX19_03185 0.21 -1.5 479,214 + MPMX19_03185 0.21 -0.3 479,214 + MPMX19_03185 0.21 +1.0 479,214 + MPMX19_03185 0.21 -1.0 479,214 + MPMX19_03185 0.21 -0.8 479,214 + MPMX19_03185 0.21 +0.4 479,214 + MPMX19_03185 0.21 +0.2 479,215 - MPMX19_03185 0.22 +0.0 479,215 - MPMX19_03185 0.22 -1.6 479,215 - MPMX19_03185 0.22 +0.6 479,215 - MPMX19_03185 0.22 +0.7 479,215 - MPMX19_03185 0.22 +0.4 479,215 - MPMX19_03185 0.22 +1.4 479,215 - MPMX19_03185 0.22 -1.2 479,215 - MPMX19_03185 0.22 +1.0 479,215 - MPMX19_03185 0.22 -0.1 479,215 - MPMX19_03185 0.22 +1.0 479,215 - MPMX19_03185 0.22 -0.1 479,219 + MPMX19_03185 0.22 +0.1 479,219 + MPMX19_03185 0.22 -0.6 479,219 + MPMX19_03185 0.22 -0.2 479,219 + MPMX19_03185 0.22 -0.7 479,219 + MPMX19_03185 0.22 -0.8 479,219 + MPMX19_03185 0.22 -0.7 479,220 - MPMX19_03185 0.22 -1.3 479,220 - MPMX19_03185 0.22 -1.0 479,279 + MPMX19_03185 0.29 +0.6 479,280 - MPMX19_03185 0.29 +0.0 479,294 + MPMX19_03185 0.31 -1.0 479,294 + MPMX19_03185 0.31 -1.7 479,294 + MPMX19_03185 0.31 +0.2 479,294 + MPMX19_03185 0.31 -0.7 479,294 + MPMX19_03185 0.31 -0.8 479,295 - MPMX19_03185 0.31 -0.5 479,295 - MPMX19_03185 0.31 +0.1 479,295 - MPMX19_03185 0.31 +0.2 479,295 - MPMX19_03185 0.31 -2.2 479,295 - MPMX19_03185 0.31 +0.7 479,391 + MPMX19_03185 0.42 -0.6 479,391 + MPMX19_03185 0.42 -1.4 479,391 + MPMX19_03185 0.42 -1.4 479,391 + MPMX19_03185 0.42 -1.6 479,391 + MPMX19_03185 0.42 -1.0 479,391 + MPMX19_03185 0.42 +0.4 479,392 - MPMX19_03185 0.42 +0.4 479,392 - MPMX19_03185 0.42 -1.1 479,453 + MPMX19_03185 0.49 -1.0 479,453 + MPMX19_03185 0.49 -0.3 479,453 + MPMX19_03185 0.49 -0.6 479,453 + MPMX19_03185 0.49 -0.7 479,453 + MPMX19_03185 0.49 +0.4 479,453 + MPMX19_03185 0.49 +0.4 479,454 - MPMX19_03185 0.49 +0.0 479,454 - MPMX19_03185 0.49 -0.8 479,454 - MPMX19_03185 0.49 -0.3 479,454 - MPMX19_03185 0.49 -1.7 479,705 + MPMX19_03185 0.79 -2.8 479,706 - MPMX19_03185 0.79 -1.0 479,706 - MPMX19_03185 0.79 -0.8 479,706 - MPMX19_03185 0.79 -1.3 479,801 + MPMX19_03185 0.90 +0.4 479,801 + MPMX19_03185 0.90 +0.0 479,801 + MPMX19_03185 0.90 +0.1 479,801 + MPMX19_03185 0.90 -0.5 479,801 + MPMX19_03185 0.90 -1.3 479,801 + MPMX19_03185 0.90 -0.0 479,801 + MPMX19_03185 0.90 +1.0 479,801 + MPMX19_03185 0.90 +1.2 479,801 + MPMX19_03185 0.90 -1.3 479,802 - MPMX19_03185 0.90 -0.3 479,802 - MPMX19_03185 0.90 +1.0 479,802 - MPMX19_03185 0.90 -0.1 479,802 - MPMX19_03185 0.90 -2.0 479,802 - MPMX19_03185 0.90 -0.6 479,802 - MPMX19_03185 0.90 +0.1 479,802 - MPMX19_03185 0.90 -0.9 479,802 - MPMX19_03185 0.90 -1.0 479,802 - MPMX19_03185 0.90 -1.9 479,805 - -0.4 479,805 - -1.0 479,838 + -2.1 479,838 + +0.4 479,838 + -1.6 479,838 + -1.4 479,838 + +0.2 479,838 + -0.3 479,838 + -1.4 479,838 + -1.2 479,838 + -1.4 479,838 + -0.1 479,838 + -0.4 479,838 + -0.2 479,838 + -1.6 479,839 - -1.3 479,839 - -1.7 479,839 - +2.0 479,839 - -0.6 479,839 - -1.3 479,839 - -2.0 479,839 - -0.9 479,839 - -0.6 479,839 - -0.4 479,839 - -1.1 479,839 - -1.3 479,839 - -1.0 479,839 - -0.1
Or see this region's nucleotide sequence