Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03159 and MPMX19_03160 are separated by 6 nucleotides MPMX19_03160 and MPMX19_03161 are separated by 114 nucleotides MPMX19_03161 and MPMX19_03162 are separated by 86 nucleotides
MPMX19_03159: MPMX19_03159 - hypothetical protein, at 451,788 to 452,810
_03159
MPMX19_03160: MPMX19_03160 - Arsenate reductase, at 452,817 to 453,347
_03160
MPMX19_03161: MPMX19_03161 - Quercetin 2,3-dioxygenase, at 453,462 to 454,160
_03161
MPMX19_03162: MPMX19_03162 - Sensor histidine kinase RcsC, at 454,247 to 455,728
_03162
Position (kb)
452
453
454 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 452.256 kb on + strand, within MPMX19_03159 at 452.256 kb on + strand, within MPMX19_03159 at 452.256 kb on + strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.386 kb on - strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.529 kb on + strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 453.328 kb on + strand at 453.328 kb on + strand at 453.328 kb on + strand at 453.329 kb on - strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.772 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 454.058 kb on + strand, within MPMX19_03161 at 454.058 kb on + strand, within MPMX19_03161 at 454.058 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.248 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 452,256 + MPMX19_03159 0.46 +0.8 452,256 + MPMX19_03159 0.46 -1.2 452,256 + MPMX19_03159 0.46 -0.5 452,257 - MPMX19_03159 0.46 -1.3 452,257 - MPMX19_03159 0.46 -0.9 452,257 - MPMX19_03159 0.46 -0.5 452,257 - MPMX19_03159 0.46 -1.0 452,257 - MPMX19_03159 0.46 -0.3 452,257 - MPMX19_03159 0.46 -2.2 452,257 - MPMX19_03159 0.46 +0.2 452,386 - MPMX19_03159 0.58 -1.2 452,511 + MPMX19_03159 0.71 -0.2 452,511 + MPMX19_03159 0.71 +0.6 452,511 + MPMX19_03159 0.71 -0.9 452,511 + MPMX19_03159 0.71 +1.2 452,511 + MPMX19_03159 0.71 -0.6 452,511 + MPMX19_03159 0.71 -0.8 452,512 - MPMX19_03159 0.71 -0.3 452,512 - MPMX19_03159 0.71 +1.1 452,512 - MPMX19_03159 0.71 +0.1 452,512 - MPMX19_03159 0.71 -2.1 452,512 - MPMX19_03159 0.71 -0.5 452,512 - MPMX19_03159 0.71 -0.5 452,529 + MPMX19_03159 0.72 -1.8 452,530 - MPMX19_03159 0.73 +0.4 452,530 - MPMX19_03159 0.73 -1.3 452,530 - MPMX19_03159 0.73 +0.5 452,530 - MPMX19_03159 0.73 -0.8 452,530 - MPMX19_03159 0.73 -0.2 452,530 - MPMX19_03159 0.73 -0.9 452,953 + MPMX19_03160 0.26 -1.2 452,953 + MPMX19_03160 0.26 -1.5 452,953 + MPMX19_03160 0.26 -0.5 452,953 + MPMX19_03160 0.26 -0.4 452,953 + MPMX19_03160 0.26 -1.0 452,953 + MPMX19_03160 0.26 -0.5 452,953 + MPMX19_03160 0.26 -1.5 452,953 + MPMX19_03160 0.26 -0.3 452,953 + MPMX19_03160 0.26 +1.0 452,953 + MPMX19_03160 0.26 -2.0 452,953 + MPMX19_03160 0.26 +0.2 452,953 + MPMX19_03160 0.26 -1.1 452,953 + MPMX19_03160 0.26 +0.2 452,953 + MPMX19_03160 0.26 -0.1 452,953 + MPMX19_03160 0.26 -1.1 452,953 + MPMX19_03160 0.26 +0.2 452,953 + MPMX19_03160 0.26 +0.5 452,953 + MPMX19_03160 0.26 -0.5 452,953 + MPMX19_03160 0.26 -0.7 452,953 + MPMX19_03160 0.26 -1.0 452,953 + MPMX19_03160 0.26 -1.4 452,953 + MPMX19_03160 0.26 -1.9 452,953 + MPMX19_03160 0.26 -1.9 452,953 + MPMX19_03160 0.26 +0.0 452,953 + MPMX19_03160 0.26 -0.3 452,953 + MPMX19_03160 0.26 -1.5 452,953 + MPMX19_03160 0.26 +1.2 452,954 - MPMX19_03160 0.26 -0.7 452,954 - MPMX19_03160 0.26 -1.0 452,954 - MPMX19_03160 0.26 -0.3 452,954 - MPMX19_03160 0.26 +0.1 452,954 - MPMX19_03160 0.26 -1.1 452,954 - MPMX19_03160 0.26 -1.3 452,954 - MPMX19_03160 0.26 -0.3 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -1.0 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -1.1 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -1.0 452,954 - MPMX19_03160 0.26 -0.3 452,954 - MPMX19_03160 0.26 -1.1 452,954 - MPMX19_03160 0.26 -2.3 452,954 - MPMX19_03160 0.26 +0.7 452,954 - MPMX19_03160 0.26 -0.8 452,954 - MPMX19_03160 0.26 -0.3 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -0.8 452,954 - MPMX19_03160 0.26 -1.8 452,954 - MPMX19_03160 0.26 -1.3 452,954 - MPMX19_03160 0.26 -0.3 452,954 - MPMX19_03160 0.26 -0.8 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -2.4 452,954 - MPMX19_03160 0.26 -0.2 452,954 - MPMX19_03160 0.26 +0.5 453,328 + +0.5 453,328 + -0.1 453,328 + -0.1 453,329 - -0.8 453,444 + -0.4 453,444 + -0.8 453,444 + -0.5 453,444 + -0.8 453,445 - +1.0 453,445 - -1.3 453,445 - -3.0 453,445 - -1.3 453,445 - -0.1 453,445 - -0.8 453,445 - +0.0 453,463 + -0.4 453,463 + -1.6 453,463 + -1.3 453,463 + -0.5 453,463 + +0.1 453,463 + -1.2 453,464 - -0.5 453,464 - -0.1 453,464 - +1.0 453,464 - -2.5 453,464 - -1.0 453,464 - -0.1 453,464 - -0.1 453,664 + MPMX19_03161 0.29 -0.6 453,664 + MPMX19_03161 0.29 -0.8 453,664 + MPMX19_03161 0.29 -0.2 453,665 - MPMX19_03161 0.29 -0.5 453,665 - MPMX19_03161 0.29 -0.0 453,665 - MPMX19_03161 0.29 -1.4 453,665 - MPMX19_03161 0.29 -0.3 453,772 + MPMX19_03161 0.44 +0.5 453,850 + MPMX19_03161 0.56 -0.1 453,850 + MPMX19_03161 0.56 -0.4 453,850 + MPMX19_03161 0.56 +0.7 453,850 + MPMX19_03161 0.56 -0.1 453,850 + MPMX19_03161 0.56 +1.6 453,851 - MPMX19_03161 0.56 +1.0 453,851 - MPMX19_03161 0.56 +0.6 453,851 - MPMX19_03161 0.56 -1.0 453,851 - MPMX19_03161 0.56 -1.0 453,851 - MPMX19_03161 0.56 -0.1 453,851 - MPMX19_03161 0.56 -1.3 453,851 - MPMX19_03161 0.56 +0.5 453,961 + MPMX19_03161 0.71 +0.8 453,961 + MPMX19_03161 0.71 +1.0 453,961 + MPMX19_03161 0.71 +0.5 453,961 + MPMX19_03161 0.71 -2.1 453,961 + MPMX19_03161 0.71 -1.3 453,961 + MPMX19_03161 0.71 +0.5 453,962 - MPMX19_03161 0.72 -0.4 453,962 - MPMX19_03161 0.72 -1.4 453,962 - MPMX19_03161 0.72 -1.4 453,962 - MPMX19_03161 0.72 +0.1 453,962 - MPMX19_03161 0.72 -0.5 453,962 - MPMX19_03161 0.72 -2.0 453,962 - MPMX19_03161 0.72 -0.3 453,962 - MPMX19_03161 0.72 -2.2 453,962 - MPMX19_03161 0.72 -0.8 454,058 + MPMX19_03161 0.85 -1.3 454,058 + MPMX19_03161 0.85 -1.3 454,058 + MPMX19_03161 0.85 -0.8 454,075 + MPMX19_03161 0.88 +0.4 454,075 + MPMX19_03161 0.88 +0.4 454,075 + MPMX19_03161 0.88 -1.9 454,075 + MPMX19_03161 0.88 -0.5 454,075 + MPMX19_03161 0.88 +0.2 454,076 - MPMX19_03161 0.88 -0.7 454,076 - MPMX19_03161 0.88 -0.7 454,076 - MPMX19_03161 0.88 +1.0 454,076 - MPMX19_03161 0.88 -0.3 454,248 + -0.8
Or see this region's nucleotide sequence