Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03160

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03159 and MPMX19_03160 are separated by 6 nucleotidesMPMX19_03160 and MPMX19_03161 are separated by 114 nucleotidesMPMX19_03161 and MPMX19_03162 are separated by 86 nucleotides MPMX19_03159: MPMX19_03159 - hypothetical protein, at 451,788 to 452,810 _03159 MPMX19_03160: MPMX19_03160 - Arsenate reductase, at 452,817 to 453,347 _03160 MPMX19_03161: MPMX19_03161 - Quercetin 2,3-dioxygenase, at 453,462 to 454,160 _03161 MPMX19_03162: MPMX19_03162 - Sensor histidine kinase RcsC, at 454,247 to 455,728 _03162 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1at 452.256 kb on + strand, within MPMX19_03159at 452.256 kb on + strand, within MPMX19_03159at 452.256 kb on + strand, within MPMX19_03159at 452.257 kb on - strand, within MPMX19_03159at 452.257 kb on - strand, within MPMX19_03159at 452.257 kb on - strand, within MPMX19_03159at 452.257 kb on - strand, within MPMX19_03159at 452.257 kb on - strand, within MPMX19_03159at 452.257 kb on - strand, within MPMX19_03159at 452.257 kb on - strand, within MPMX19_03159at 452.386 kb on - strand, within MPMX19_03159at 452.511 kb on + strand, within MPMX19_03159at 452.511 kb on + strand, within MPMX19_03159at 452.511 kb on + strand, within MPMX19_03159at 452.511 kb on + strand, within MPMX19_03159at 452.511 kb on + strand, within MPMX19_03159at 452.511 kb on + strand, within MPMX19_03159at 452.512 kb on - strand, within MPMX19_03159at 452.512 kb on - strand, within MPMX19_03159at 452.512 kb on - strand, within MPMX19_03159at 452.512 kb on - strand, within MPMX19_03159at 452.512 kb on - strand, within MPMX19_03159at 452.512 kb on - strand, within MPMX19_03159at 452.529 kb on + strand, within MPMX19_03159at 452.530 kb on - strand, within MPMX19_03159at 452.530 kb on - strand, within MPMX19_03159at 452.530 kb on - strand, within MPMX19_03159at 452.530 kb on - strand, within MPMX19_03159at 452.530 kb on - strand, within MPMX19_03159at 452.530 kb on - strand, within MPMX19_03159at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.953 kb on + strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 452.954 kb on - strand, within MPMX19_03160at 453.328 kb on + strandat 453.328 kb on + strandat 453.328 kb on + strandat 453.329 kb on - strandat 453.444 kb on + strandat 453.444 kb on + strandat 453.444 kb on + strandat 453.444 kb on + strandat 453.445 kb on - strandat 453.445 kb on - strandat 453.445 kb on - strandat 453.445 kb on - strandat 453.445 kb on - strandat 453.445 kb on - strandat 453.445 kb on - strandat 453.463 kb on + strandat 453.463 kb on + strandat 453.463 kb on + strandat 453.463 kb on + strandat 453.463 kb on + strandat 453.463 kb on + strandat 453.464 kb on - strandat 453.464 kb on - strandat 453.464 kb on - strandat 453.464 kb on - strandat 453.464 kb on - strandat 453.464 kb on - strandat 453.464 kb on - strandat 453.664 kb on + strand, within MPMX19_03161at 453.664 kb on + strand, within MPMX19_03161at 453.664 kb on + strand, within MPMX19_03161at 453.665 kb on - strand, within MPMX19_03161at 453.665 kb on - strand, within MPMX19_03161at 453.665 kb on - strand, within MPMX19_03161at 453.665 kb on - strand, within MPMX19_03161at 453.772 kb on + strand, within MPMX19_03161at 453.850 kb on + strand, within MPMX19_03161at 453.850 kb on + strand, within MPMX19_03161at 453.850 kb on + strand, within MPMX19_03161at 453.850 kb on + strand, within MPMX19_03161at 453.850 kb on + strand, within MPMX19_03161at 453.851 kb on - strand, within MPMX19_03161at 453.851 kb on - strand, within MPMX19_03161at 453.851 kb on - strand, within MPMX19_03161at 453.851 kb on - strand, within MPMX19_03161at 453.851 kb on - strand, within MPMX19_03161at 453.851 kb on - strand, within MPMX19_03161at 453.851 kb on - strand, within MPMX19_03161at 453.961 kb on + strand, within MPMX19_03161at 453.961 kb on + strand, within MPMX19_03161at 453.961 kb on + strand, within MPMX19_03161at 453.961 kb on + strand, within MPMX19_03161at 453.961 kb on + strand, within MPMX19_03161at 453.961 kb on + strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 453.962 kb on - strand, within MPMX19_03161at 454.058 kb on + strand, within MPMX19_03161at 454.058 kb on + strand, within MPMX19_03161at 454.058 kb on + strand, within MPMX19_03161at 454.075 kb on + strand, within MPMX19_03161at 454.075 kb on + strand, within MPMX19_03161at 454.075 kb on + strand, within MPMX19_03161at 454.075 kb on + strand, within MPMX19_03161at 454.075 kb on + strand, within MPMX19_03161at 454.076 kb on - strand, within MPMX19_03161at 454.076 kb on - strand, within MPMX19_03161at 454.076 kb on - strand, within MPMX19_03161at 454.076 kb on - strand, within MPMX19_03161at 454.248 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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452,256 + MPMX19_03159 0.46 +0.8
452,256 + MPMX19_03159 0.46 -1.2
452,256 + MPMX19_03159 0.46 -0.5
452,257 - MPMX19_03159 0.46 -1.3
452,257 - MPMX19_03159 0.46 -0.9
452,257 - MPMX19_03159 0.46 -0.5
452,257 - MPMX19_03159 0.46 -1.0
452,257 - MPMX19_03159 0.46 -0.3
452,257 - MPMX19_03159 0.46 -2.2
452,257 - MPMX19_03159 0.46 +0.2
452,386 - MPMX19_03159 0.58 -1.2
452,511 + MPMX19_03159 0.71 -0.2
452,511 + MPMX19_03159 0.71 +0.6
452,511 + MPMX19_03159 0.71 -0.9
452,511 + MPMX19_03159 0.71 +1.2
452,511 + MPMX19_03159 0.71 -0.6
452,511 + MPMX19_03159 0.71 -0.8
452,512 - MPMX19_03159 0.71 -0.3
452,512 - MPMX19_03159 0.71 +1.1
452,512 - MPMX19_03159 0.71 +0.1
452,512 - MPMX19_03159 0.71 -2.1
452,512 - MPMX19_03159 0.71 -0.5
452,512 - MPMX19_03159 0.71 -0.5
452,529 + MPMX19_03159 0.72 -1.8
452,530 - MPMX19_03159 0.73 +0.4
452,530 - MPMX19_03159 0.73 -1.3
452,530 - MPMX19_03159 0.73 +0.5
452,530 - MPMX19_03159 0.73 -0.8
452,530 - MPMX19_03159 0.73 -0.2
452,530 - MPMX19_03159 0.73 -0.9
452,953 + MPMX19_03160 0.26 -1.2
452,953 + MPMX19_03160 0.26 -1.5
452,953 + MPMX19_03160 0.26 -0.5
452,953 + MPMX19_03160 0.26 -0.4
452,953 + MPMX19_03160 0.26 -1.0
452,953 + MPMX19_03160 0.26 -0.5
452,953 + MPMX19_03160 0.26 -1.5
452,953 + MPMX19_03160 0.26 -0.3
452,953 + MPMX19_03160 0.26 +1.0
452,953 + MPMX19_03160 0.26 -2.0
452,953 + MPMX19_03160 0.26 +0.2
452,953 + MPMX19_03160 0.26 -1.1
452,953 + MPMX19_03160 0.26 +0.2
452,953 + MPMX19_03160 0.26 -0.1
452,953 + MPMX19_03160 0.26 -1.1
452,953 + MPMX19_03160 0.26 +0.2
452,953 + MPMX19_03160 0.26 +0.5
452,953 + MPMX19_03160 0.26 -0.5
452,953 + MPMX19_03160 0.26 -0.7
452,953 + MPMX19_03160 0.26 -1.0
452,953 + MPMX19_03160 0.26 -1.4
452,953 + MPMX19_03160 0.26 -1.9
452,953 + MPMX19_03160 0.26 -1.9
452,953 + MPMX19_03160 0.26 +0.0
452,953 + MPMX19_03160 0.26 -0.3
452,953 + MPMX19_03160 0.26 -1.5
452,953 + MPMX19_03160 0.26 +1.2
452,954 - MPMX19_03160 0.26 -0.7
452,954 - MPMX19_03160 0.26 -1.0
452,954 - MPMX19_03160 0.26 -0.3
452,954 - MPMX19_03160 0.26 +0.1
452,954 - MPMX19_03160 0.26 -1.1
452,954 - MPMX19_03160 0.26 -1.3
452,954 - MPMX19_03160 0.26 -0.3
452,954 - MPMX19_03160 0.26 -0.5
452,954 - MPMX19_03160 0.26 -1.0
452,954 - MPMX19_03160 0.26 -0.5
452,954 - MPMX19_03160 0.26 -1.1
452,954 - MPMX19_03160 0.26 -0.5
452,954 - MPMX19_03160 0.26 -1.0
452,954 - MPMX19_03160 0.26 -0.3
452,954 - MPMX19_03160 0.26 -1.1
452,954 - MPMX19_03160 0.26 -2.3
452,954 - MPMX19_03160 0.26 +0.7
452,954 - MPMX19_03160 0.26 -0.8
452,954 - MPMX19_03160 0.26 -0.3
452,954 - MPMX19_03160 0.26 -0.5
452,954 - MPMX19_03160 0.26 -0.8
452,954 - MPMX19_03160 0.26 -1.8
452,954 - MPMX19_03160 0.26 -1.3
452,954 - MPMX19_03160 0.26 -0.3
452,954 - MPMX19_03160 0.26 -0.8
452,954 - MPMX19_03160 0.26 -0.5
452,954 - MPMX19_03160 0.26 -2.4
452,954 - MPMX19_03160 0.26 -0.2
452,954 - MPMX19_03160 0.26 +0.5
453,328 + +0.5
453,328 + -0.1
453,328 + -0.1
453,329 - -0.8
453,444 + -0.4
453,444 + -0.8
453,444 + -0.5
453,444 + -0.8
453,445 - +1.0
453,445 - -1.3
453,445 - -3.0
453,445 - -1.3
453,445 - -0.1
453,445 - -0.8
453,445 - +0.0
453,463 + -0.4
453,463 + -1.6
453,463 + -1.3
453,463 + -0.5
453,463 + +0.1
453,463 + -1.2
453,464 - -0.5
453,464 - -0.1
453,464 - +1.0
453,464 - -2.5
453,464 - -1.0
453,464 - -0.1
453,464 - -0.1
453,664 + MPMX19_03161 0.29 -0.6
453,664 + MPMX19_03161 0.29 -0.8
453,664 + MPMX19_03161 0.29 -0.2
453,665 - MPMX19_03161 0.29 -0.5
453,665 - MPMX19_03161 0.29 -0.0
453,665 - MPMX19_03161 0.29 -1.4
453,665 - MPMX19_03161 0.29 -0.3
453,772 + MPMX19_03161 0.44 +0.5
453,850 + MPMX19_03161 0.56 -0.1
453,850 + MPMX19_03161 0.56 -0.4
453,850 + MPMX19_03161 0.56 +0.7
453,850 + MPMX19_03161 0.56 -0.1
453,850 + MPMX19_03161 0.56 +1.6
453,851 - MPMX19_03161 0.56 +1.0
453,851 - MPMX19_03161 0.56 +0.6
453,851 - MPMX19_03161 0.56 -1.0
453,851 - MPMX19_03161 0.56 -1.0
453,851 - MPMX19_03161 0.56 -0.1
453,851 - MPMX19_03161 0.56 -1.3
453,851 - MPMX19_03161 0.56 +0.5
453,961 + MPMX19_03161 0.71 +0.8
453,961 + MPMX19_03161 0.71 +1.0
453,961 + MPMX19_03161 0.71 +0.5
453,961 + MPMX19_03161 0.71 -2.1
453,961 + MPMX19_03161 0.71 -1.3
453,961 + MPMX19_03161 0.71 +0.5
453,962 - MPMX19_03161 0.72 -0.4
453,962 - MPMX19_03161 0.72 -1.4
453,962 - MPMX19_03161 0.72 -1.4
453,962 - MPMX19_03161 0.72 +0.1
453,962 - MPMX19_03161 0.72 -0.5
453,962 - MPMX19_03161 0.72 -2.0
453,962 - MPMX19_03161 0.72 -0.3
453,962 - MPMX19_03161 0.72 -2.2
453,962 - MPMX19_03161 0.72 -0.8
454,058 + MPMX19_03161 0.85 -1.3
454,058 + MPMX19_03161 0.85 -1.3
454,058 + MPMX19_03161 0.85 -0.8
454,075 + MPMX19_03161 0.88 +0.4
454,075 + MPMX19_03161 0.88 +0.4
454,075 + MPMX19_03161 0.88 -1.9
454,075 + MPMX19_03161 0.88 -0.5
454,075 + MPMX19_03161 0.88 +0.2
454,076 - MPMX19_03161 0.88 -0.7
454,076 - MPMX19_03161 0.88 -0.7
454,076 - MPMX19_03161 0.88 +1.0
454,076 - MPMX19_03161 0.88 -0.3
454,248 + -0.8

Or see this region's nucleotide sequence