Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03154 and MPMX19_03155 are separated by 86 nucleotides MPMX19_03155 and MPMX19_03156 are separated by 3 nucleotides MPMX19_03156 and MPMX19_03157 overlap by 4 nucleotides MPMX19_03157 and MPMX19_03158 are separated by 115 nucleotides
MPMX19_03154: MPMX19_03154 - hypothetical protein, at 448,952 to 449,413
_03154
MPMX19_03155: MPMX19_03155 - hypothetical protein, at 449,500 to 449,760
_03155
MPMX19_03156: MPMX19_03156 - Ribonuclease VapC28, at 449,764 to 450,153
_03156
MPMX19_03157: MPMX19_03157 - hypothetical protein, at 450,150 to 450,281
_03157
MPMX19_03158: MPMX19_03158 - putative protein YcjX, at 450,397 to 451,791
_03158
Position (kb) 450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.234 kb on + strand, within MPMX19_03154 at 449.234 kb on + strand, within MPMX19_03154 at 449.234 kb on + strand, within MPMX19_03154 at 449.234 kb on + strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.256 kb on - strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.734 kb on + strand, within MPMX19_03155 at 449.734 kb on + strand, within MPMX19_03155 at 449.734 kb on + strand, within MPMX19_03155 at 449.735 kb on - strand at 449.735 kb on - strand at 449.735 kb on - strand at 449.735 kb on - strand at 449.775 kb on + strand at 449.775 kb on + strand at 449.775 kb on + strand at 449.776 kb on - strand at 449.776 kb on - strand at 449.776 kb on - strand at 449.776 kb on - strand at 450.019 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.073 kb on + strand, within MPMX19_03156 at 450.074 kb on - strand, within MPMX19_03156 at 450.161 kb on + strand at 450.161 kb on + strand at 450.161 kb on + strand at 450.162 kb on - strand at 450.162 kb on - strand at 450.162 kb on - strand at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.218 kb on - strand, within MPMX19_03157 at 450.218 kb on - strand, within MPMX19_03157 at 450.359 kb on + strand at 450.359 kb on + strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.424 kb on + strand at 450.424 kb on + strand at 450.424 kb on + strand at 450.425 kb on - strand at 450.425 kb on - strand at 450.425 kb on - strand at 450.425 kb on - strand at 450.724 kb on + strand, within MPMX19_03158 at 450.724 kb on + strand, within MPMX19_03158 at 450.793 kb on + strand, within MPMX19_03158 at 450.793 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 451.166 kb on - strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 449,234 + MPMX19_03154 0.61 +0.1 449,234 + MPMX19_03154 0.61 -1.1 449,234 + MPMX19_03154 0.61 -0.9 449,234 + MPMX19_03154 0.61 -1.2 449,235 - MPMX19_03154 0.61 -0.8 449,235 - MPMX19_03154 0.61 -0.1 449,235 - MPMX19_03154 0.61 +1.3 449,235 - MPMX19_03154 0.61 +0.7 449,235 - MPMX19_03154 0.61 +0.1 449,255 + MPMX19_03154 0.66 -0.1 449,255 + MPMX19_03154 0.66 -0.3 449,255 + MPMX19_03154 0.66 +0.4 449,255 + MPMX19_03154 0.66 -1.6 449,255 + MPMX19_03154 0.66 -0.6 449,255 + MPMX19_03154 0.66 -0.8 449,255 + MPMX19_03154 0.66 -1.0 449,256 - MPMX19_03154 0.66 +0.2 449,330 + MPMX19_03154 0.82 -1.6 449,330 + MPMX19_03154 0.82 -1.9 449,330 + MPMX19_03154 0.82 -0.8 449,330 + MPMX19_03154 0.82 -1.5 449,330 + MPMX19_03154 0.82 -0.5 449,330 + MPMX19_03154 0.82 -1.0 449,330 + MPMX19_03154 0.82 -1.1 449,331 - MPMX19_03154 0.82 +0.6 449,331 - MPMX19_03154 0.82 +0.3 449,331 - MPMX19_03154 0.82 -0.2 449,331 - MPMX19_03154 0.82 +0.5 449,331 - MPMX19_03154 0.82 -0.4 449,331 - MPMX19_03154 0.82 +0.4 449,331 - MPMX19_03154 0.82 -1.1 449,331 - MPMX19_03154 0.82 +0.2 449,399 + -1.9 449,399 + -1.6 449,399 + -1.5 449,399 + -0.8 449,399 + +0.1 449,399 + +0.5 449,399 + +0.5 449,399 + +0.4 449,399 + -1.0 449,399 + +0.3 449,399 + +0.2 449,399 + -1.5 449,399 + +0.1 449,399 + +0.7 449,399 + -0.5 449,399 + -0.9 449,399 + -0.6 449,399 + -1.7 449,400 - -1.9 449,400 - -0.3 449,400 - +0.9 449,400 - -0.4 449,400 - +0.7 449,400 - -0.7 449,400 - +0.1 449,400 - -1.5 449,400 - +0.7 449,400 - -0.8 449,400 - -2.5 449,400 - -0.9 449,400 - -0.4 449,400 - +0.4 449,400 - +0.1 449,400 - +0.7 449,400 - -1.1 449,401 + -1.4 449,401 + -0.2 449,401 + -0.4 449,401 + +0.1 449,401 + -0.5 449,402 - -1.1 449,402 - -0.1 449,402 - -1.9 449,402 - -0.9 449,402 - +0.6 449,402 - -1.6 449,670 + MPMX19_03155 0.65 +1.1 449,670 + MPMX19_03155 0.65 -1.1 449,670 + MPMX19_03155 0.65 -1.6 449,670 + MPMX19_03155 0.65 +0.6 449,670 + MPMX19_03155 0.65 +1.2 449,670 + MPMX19_03155 0.65 -0.7 449,670 + MPMX19_03155 0.65 -0.4 449,671 - MPMX19_03155 0.66 -0.1 449,671 - MPMX19_03155 0.66 -0.1 449,671 - MPMX19_03155 0.66 -0.1 449,671 - MPMX19_03155 0.66 -0.9 449,671 - MPMX19_03155 0.66 -0.9 449,671 - MPMX19_03155 0.66 -1.0 449,671 - MPMX19_03155 0.66 +1.3 449,734 + MPMX19_03155 0.90 -0.6 449,734 + MPMX19_03155 0.90 +2.1 449,734 + MPMX19_03155 0.90 -0.9 449,735 - +1.7 449,735 - -0.8 449,735 - -1.1 449,735 - -0.5 449,775 + -0.2 449,775 + -0.5 449,775 + -0.0 449,776 - -1.3 449,776 - -1.5 449,776 - -0.5 449,776 - -1.3 450,019 + MPMX19_03156 0.65 +0.6 450,055 + MPMX19_03156 0.75 +0.1 450,055 + MPMX19_03156 0.75 +0.1 450,055 + MPMX19_03156 0.75 +0.2 450,055 + MPMX19_03156 0.75 -0.5 450,055 + MPMX19_03156 0.75 -1.1 450,055 + MPMX19_03156 0.75 -1.9 450,055 + MPMX19_03156 0.75 -0.9 450,055 + MPMX19_03156 0.75 +0.5 450,055 + MPMX19_03156 0.75 -0.5 450,055 + MPMX19_03156 0.75 -0.5 450,056 - MPMX19_03156 0.75 -1.3 450,056 - MPMX19_03156 0.75 +0.5 450,056 - MPMX19_03156 0.75 -0.1 450,056 - MPMX19_03156 0.75 -0.3 450,056 - MPMX19_03156 0.75 +0.5 450,056 - MPMX19_03156 0.75 -1.3 450,056 - MPMX19_03156 0.75 -0.3 450,056 - MPMX19_03156 0.75 -1.5 450,056 - MPMX19_03156 0.75 -0.8 450,073 + MPMX19_03156 0.79 -0.6 450,074 - MPMX19_03156 0.79 -1.7 450,161 + -0.9 450,161 + -0.9 450,161 + -0.8 450,162 - -0.5 450,162 - +1.3 450,162 - +1.0 450,217 + MPMX19_03157 0.51 -1.3 450,217 + MPMX19_03157 0.51 -0.8 450,217 + MPMX19_03157 0.51 -1.0 450,217 + MPMX19_03157 0.51 -0.5 450,217 + MPMX19_03157 0.51 -1.1 450,218 - MPMX19_03157 0.52 +0.6 450,218 - MPMX19_03157 0.52 +1.1 450,359 + +0.6 450,359 + -1.1 450,360 - +0.2 450,360 - -0.5 450,360 - -1.6 450,360 - -1.6 450,360 - -1.8 450,360 - -1.3 450,360 - +0.8 450,360 - -1.4 450,361 + -0.3 450,361 + -0.3 450,361 + -1.4 450,361 + -0.8 450,361 + -0.8 450,361 + +0.1 450,361 + +0.5 450,361 + +0.6 450,361 + +0.2 450,361 + -0.2 450,361 + -0.1 450,361 + -1.5 450,361 + -0.3 450,361 + -1.6 450,361 + -0.4 450,361 + -1.2 450,361 + -2.3 450,361 + -0.5 450,361 + -2.3 450,361 + -0.8 450,361 + -1.3 450,361 + -0.4 450,361 + -0.8 450,361 + -1.3 450,361 + -0.2 450,361 + +0.4 450,362 - +0.5 450,362 - -1.8 450,362 - -1.0 450,362 - +0.9 450,362 - -0.9 450,362 - -1.6 450,362 - -0.4 450,362 - -1.9 450,362 - -2.3 450,362 - -3.5 450,362 - -1.0 450,362 - -0.1 450,362 - -1.5 450,362 - -1.9 450,362 - -0.8 450,362 - +1.5 450,362 - +0.5 450,362 - -0.5 450,362 - -2.7 450,362 - -0.9 450,362 - -2.5 450,362 - -1.9 450,362 - +0.4 450,362 - -1.1 450,362 - -0.5 450,362 - -1.1 450,362 - -0.9 450,424 + -0.8 450,424 + -0.9 450,424 + -1.4 450,425 - +0.2 450,425 - -0.8 450,425 - +0.5 450,425 - +0.1 450,724 + MPMX19_03158 0.23 +0.0 450,724 + MPMX19_03158 0.23 +0.0 450,793 + MPMX19_03158 0.28 -1.3 450,793 + MPMX19_03158 0.28 -1.1 450,982 + MPMX19_03158 0.42 +1.0 450,982 + MPMX19_03158 0.42 -1.2 450,983 - MPMX19_03158 0.42 -1.1 450,983 - MPMX19_03158 0.42 -0.8 450,983 - MPMX19_03158 0.42 +1.7 450,983 - MPMX19_03158 0.42 +0.7 450,983 - MPMX19_03158 0.42 +1.2 450,983 - MPMX19_03158 0.42 -1.3 450,991 + MPMX19_03158 0.43 -0.1 450,991 + MPMX19_03158 0.43 +0.2 450,991 + MPMX19_03158 0.43 -0.1 450,991 + MPMX19_03158 0.43 -0.4 450,991 + MPMX19_03158 0.43 -0.2 450,991 + MPMX19_03158 0.43 -1.1 450,992 - MPMX19_03158 0.43 +0.0 450,992 - MPMX19_03158 0.43 -1.4 450,992 - MPMX19_03158 0.43 -1.3 450,992 - MPMX19_03158 0.43 -1.3 450,992 - MPMX19_03158 0.43 -1.4 450,992 - MPMX19_03158 0.43 +0.0 450,992 - MPMX19_03158 0.43 -1.4 450,992 - MPMX19_03158 0.43 -0.5 451,166 - MPMX19_03158 0.55 +0.1 451,174 + MPMX19_03158 0.56 -0.4 451,174 + MPMX19_03158 0.56 +0.4 451,174 + MPMX19_03158 0.56 -0.8 451,174 + MPMX19_03158 0.56 -1.0 451,175 - MPMX19_03158 0.56 -0.5 451,175 - MPMX19_03158 0.56 -1.1
Or see this region's nucleotide sequence