Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03141

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03139 and MPMX19_03140 are separated by 150 nucleotidesMPMX19_03140 and MPMX19_03141 are separated by 106 nucleotidesMPMX19_03141 and MPMX19_03142 are separated by 159 nucleotides MPMX19_03139: MPMX19_03139 - 23S ribosomal RNA, at 427,284 to 430,017 _03139 MPMX19_03140: MPMX19_03140 - 5S ribosomal RNA, at 430,168 to 430,278 _03140 MPMX19_03141: MPMX19_03141 - hypothetical protein, at 430,385 to 430,804 _03141 MPMX19_03142: MPMX19_03142 - Putative thiamine pyrophosphate-containing protein YdaP, at 430,964 to 432,766 _03142 Position (kb) 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1at 430.383 kb on + strandat 430.758 kb on + strand, within MPMX19_03141at 430.758 kb on + strand, within MPMX19_03141at 430.758 kb on + strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.832 kb on - strandat 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.297 kb on + strand, within MPMX19_03142at 431.297 kb on + strand, within MPMX19_03142at 431.298 kb on - strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.765 kb on + strand, within MPMX19_03142at 431.765 kb on + strand, within MPMX19_03142at 431.765 kb on + strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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430,383 + -0.9
430,758 + MPMX19_03141 0.89 -1.8
430,758 + MPMX19_03141 0.89 -1.5
430,758 + MPMX19_03141 0.89 -0.4
430,759 - MPMX19_03141 0.89 -1.3
430,759 - MPMX19_03141 0.89 -0.5
430,759 - MPMX19_03141 0.89 -1.4
430,759 - MPMX19_03141 0.89 -0.1
430,832 - +0.2
431,153 + MPMX19_03142 0.10 -0.1
431,153 + MPMX19_03142 0.10 -0.1
431,153 + MPMX19_03142 0.10 -1.3
431,153 + MPMX19_03142 0.10 -0.6
431,153 + MPMX19_03142 0.10 -1.6
431,153 + MPMX19_03142 0.10 -1.3
431,153 + MPMX19_03142 0.10 -0.3
431,153 + MPMX19_03142 0.10 +0.5
431,153 + MPMX19_03142 0.10 -0.3
431,153 + MPMX19_03142 0.10 -0.8
431,154 - MPMX19_03142 0.11 -0.5
431,154 - MPMX19_03142 0.11 +0.1
431,154 - MPMX19_03142 0.11 -0.2
431,154 - MPMX19_03142 0.11 -0.3
431,154 - MPMX19_03142 0.11 -1.2
431,154 - MPMX19_03142 0.11 +1.1
431,154 - MPMX19_03142 0.11 -0.8
431,154 - MPMX19_03142 0.11 +1.1
431,154 - MPMX19_03142 0.11 -0.5
431,154 - MPMX19_03142 0.11 +1.1
431,154 - MPMX19_03142 0.11 -1.0
431,154 - MPMX19_03142 0.11 -1.4
431,222 + MPMX19_03142 0.14 +0.1
431,222 + MPMX19_03142 0.14 -1.9
431,222 + MPMX19_03142 0.14 -0.4
431,222 + MPMX19_03142 0.14 -0.1
431,222 + MPMX19_03142 0.14 +0.8
431,222 + MPMX19_03142 0.14 -1.1
431,222 + MPMX19_03142 0.14 +0.5
431,222 + MPMX19_03142 0.14 -0.9
431,222 + MPMX19_03142 0.14 -0.2
431,223 - MPMX19_03142 0.14 +0.3
431,223 - MPMX19_03142 0.14 -0.3
431,223 - MPMX19_03142 0.14 +0.4
431,223 - MPMX19_03142 0.14 -0.4
431,223 - MPMX19_03142 0.14 -1.0
431,223 - MPMX19_03142 0.14 +0.5
431,223 - MPMX19_03142 0.14 +0.2
431,223 - MPMX19_03142 0.14 -0.5
431,223 - MPMX19_03142 0.14 -2.5
431,297 + MPMX19_03142 0.18 -2.3
431,297 + MPMX19_03142 0.18 +0.5
431,298 - MPMX19_03142 0.19 -1.0
431,348 + MPMX19_03142 0.21 -1.2
431,348 + MPMX19_03142 0.21 -1.4
431,348 + MPMX19_03142 0.21 +0.5
431,348 + MPMX19_03142 0.21 -0.5
431,349 - MPMX19_03142 0.21 -0.6
431,349 - MPMX19_03142 0.21 -0.5
431,349 - MPMX19_03142 0.21 -0.5
431,349 - MPMX19_03142 0.21 +0.6
431,349 - MPMX19_03142 0.21 -0.8
431,349 - MPMX19_03142 0.21 -1.1
431,349 - MPMX19_03142 0.21 -0.5
431,349 - MPMX19_03142 0.21 -0.2
431,349 - MPMX19_03142 0.21 -3.1
431,765 + MPMX19_03142 0.44 -1.4
431,765 + MPMX19_03142 0.44 -1.5
431,765 + MPMX19_03142 0.44 +0.6
431,766 - MPMX19_03142 0.44 -0.3
431,766 - MPMX19_03142 0.44 -1.3
431,766 - MPMX19_03142 0.44 +0.1
431,766 - MPMX19_03142 0.44 +0.1
431,766 - MPMX19_03142 0.44 -1.2

Or see this region's nucleotide sequence