Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03135

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03134 and MPMX19_03135 are separated by 172 nucleotidesMPMX19_03135 and MPMX19_03136 are separated by 493 nucleotides MPMX19_03134: MPMX19_03134 - hypothetical protein, at 422,435 to 423,649 _03134 MPMX19_03135: MPMX19_03135 - hypothetical protein, at 423,822 to 424,664 _03135 MPMX19_03136: MPMX19_03136 - 16S ribosomal RNA, at 425,158 to 426,639 _03136 Position (kb) 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 422.963 kb on + strand, within MPMX19_03134at 422.963 kb on + strand, within MPMX19_03134at 422.963 kb on + strand, within MPMX19_03134at 422.963 kb on + strand, within MPMX19_03134at 422.964 kb on - strand, within MPMX19_03134at 422.964 kb on - strand, within MPMX19_03134at 422.964 kb on - strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.368 kb on + strand, within MPMX19_03134at 423.368 kb on + strand, within MPMX19_03134at 423.368 kb on + strand, within MPMX19_03134at 423.369 kb on - strand, within MPMX19_03134at 423.369 kb on - strand, within MPMX19_03134at 423.369 kb on - strand, within MPMX19_03134at 423.369 kb on - strand, within MPMX19_03134at 423.386 kb on + strand, within MPMX19_03134at 423.386 kb on + strand, within MPMX19_03134at 423.386 kb on + strand, within MPMX19_03134at 423.387 kb on - strand, within MPMX19_03134at 423.387 kb on - strand, within MPMX19_03134at 423.387 kb on - strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.521 kb on + strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.522 kb on - strand, within MPMX19_03134at 423.557 kb on + strandat 423.557 kb on + strandat 423.557 kb on + strandat 423.558 kb on - strandat 423.569 kb on + strandat 423.569 kb on + strandat 423.569 kb on + strandat 423.570 kb on - strandat 423.608 kb on + strandat 423.608 kb on + strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.659 kb on + strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.753 kb on + strandat 423.753 kb on + strandat 423.753 kb on + strandat 423.954 kb on + strand, within MPMX19_03135at 423.955 kb on - strand, within MPMX19_03135at 423.955 kb on - strand, within MPMX19_03135at 423.955 kb on - strand, within MPMX19_03135at 423.957 kb on + strand, within MPMX19_03135at 423.957 kb on + strand, within MPMX19_03135at 423.957 kb on + strand, within MPMX19_03135at 423.957 kb on + strand, within MPMX19_03135at 423.957 kb on + strand, within MPMX19_03135at 423.957 kb on + strand, within MPMX19_03135at 423.958 kb on - strand, within MPMX19_03135at 423.958 kb on - strand, within MPMX19_03135at 424.038 kb on + strand, within MPMX19_03135at 424.038 kb on + strand, within MPMX19_03135at 424.038 kb on + strand, within MPMX19_03135at 424.039 kb on - strand, within MPMX19_03135at 424.039 kb on - strand, within MPMX19_03135at 424.056 kb on + strand, within MPMX19_03135at 424.057 kb on - strand, within MPMX19_03135at 424.057 kb on - strand, within MPMX19_03135at 424.057 kb on - strand, within MPMX19_03135at 424.057 kb on - strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.542 kb on + strand, within MPMX19_03135at 424.543 kb on - strand, within MPMX19_03135at 424.543 kb on - strand, within MPMX19_03135at 424.543 kb on - strand, within MPMX19_03135at 424.543 kb on - strand, within MPMX19_03135at 424.543 kb on - strand, within MPMX19_03135at 424.543 kb on - strand, within MPMX19_03135at 424.593 kb on + strandat 424.593 kb on + strandat 424.594 kb on - strandat 424.594 kb on - strandat 424.594 kb on - strandat 424.602 kb on + strandat 424.602 kb on + strandat 424.602 kb on + strandat 424.603 kb on - strandat 424.603 kb on - strandat 424.603 kb on - strandat 424.603 kb on - strandat 424.804 kb on - strandat 424.804 kb on - strandat 424.804 kb on - strandat 424.806 kb on - strandat 424.806 kb on - strandat 424.806 kb on - strandat 424.806 kb on - strandat 424.806 kb on - strandat 424.806 kb on - strandat 424.806 kb on - strandat 424.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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422,963 + MPMX19_03134 0.43 +0.5
422,963 + MPMX19_03134 0.43 -2.0
422,963 + MPMX19_03134 0.43 -1.1
422,963 + MPMX19_03134 0.43 -0.3
422,964 - MPMX19_03134 0.44 -1.3
422,964 - MPMX19_03134 0.44 +0.7
422,964 - MPMX19_03134 0.44 -0.7
423,074 + MPMX19_03134 0.53 -1.5
423,074 + MPMX19_03134 0.53 -0.4
423,074 + MPMX19_03134 0.53 -0.5
423,074 + MPMX19_03134 0.53 +0.5
423,074 + MPMX19_03134 0.53 -0.5
423,074 + MPMX19_03134 0.53 -1.4
423,075 - MPMX19_03134 0.53 -2.0
423,075 - MPMX19_03134 0.53 -1.3
423,075 - MPMX19_03134 0.53 -0.9
423,075 - MPMX19_03134 0.53 -0.9
423,075 - MPMX19_03134 0.53 -0.2
423,075 - MPMX19_03134 0.53 -1.9
423,075 - MPMX19_03134 0.53 -0.1
423,075 - MPMX19_03134 0.53 +0.1
423,075 - MPMX19_03134 0.53 -2.1
423,075 - MPMX19_03134 0.53 -1.8
423,278 + MPMX19_03134 0.69 -1.4
423,278 + MPMX19_03134 0.69 +0.1
423,278 + MPMX19_03134 0.69 -2.7
423,278 + MPMX19_03134 0.69 -1.1
423,278 + MPMX19_03134 0.69 -1.1
423,278 + MPMX19_03134 0.69 -0.3
423,279 - MPMX19_03134 0.69 +0.5
423,279 - MPMX19_03134 0.69 +0.5
423,279 - MPMX19_03134 0.69 -0.6
423,279 - MPMX19_03134 0.69 -0.9
423,279 - MPMX19_03134 0.69 +0.9
423,279 - MPMX19_03134 0.69 -0.1
423,368 + MPMX19_03134 0.77 -1.8
423,368 + MPMX19_03134 0.77 -0.6
423,368 + MPMX19_03134 0.77 +0.6
423,369 - MPMX19_03134 0.77 +0.1
423,369 - MPMX19_03134 0.77 -1.3
423,369 - MPMX19_03134 0.77 +0.5
423,369 - MPMX19_03134 0.77 +0.2
423,386 + MPMX19_03134 0.78 +0.1
423,386 + MPMX19_03134 0.78 +0.5
423,386 + MPMX19_03134 0.78 +0.8
423,387 - MPMX19_03134 0.78 -0.4
423,387 - MPMX19_03134 0.78 +1.6
423,387 - MPMX19_03134 0.78 -1.9
423,521 + MPMX19_03134 0.89 -0.8
423,521 + MPMX19_03134 0.89 -0.9
423,521 + MPMX19_03134 0.89 +0.3
423,521 + MPMX19_03134 0.89 -0.5
423,521 + MPMX19_03134 0.89 -1.3
423,521 + MPMX19_03134 0.89 -0.8
423,521 + MPMX19_03134 0.89 -0.3
423,521 + MPMX19_03134 0.89 -0.5
423,521 + MPMX19_03134 0.89 -1.3
423,521 + MPMX19_03134 0.89 +0.5
423,521 + MPMX19_03134 0.89 -0.5
423,521 + MPMX19_03134 0.89 -0.8
423,521 + MPMX19_03134 0.89 -1.1
423,521 + MPMX19_03134 0.89 -1.0
423,521 + MPMX19_03134 0.89 -0.5
423,521 + MPMX19_03134 0.89 -0.6
423,521 + MPMX19_03134 0.89 +0.1
423,521 + MPMX19_03134 0.89 -0.1
423,521 + MPMX19_03134 0.89 -0.5
423,521 + MPMX19_03134 0.89 -0.6
423,521 + MPMX19_03134 0.89 +0.3
423,522 - MPMX19_03134 0.89 +1.2
423,522 - MPMX19_03134 0.89 +0.5
423,522 - MPMX19_03134 0.89 -0.6
423,522 - MPMX19_03134 0.89 +0.3
423,522 - MPMX19_03134 0.89 -0.9
423,522 - MPMX19_03134 0.89 -1.5
423,522 - MPMX19_03134 0.89 -0.4
423,522 - MPMX19_03134 0.89 -1.1
423,522 - MPMX19_03134 0.89 -2.4
423,522 - MPMX19_03134 0.89 +0.9
423,522 - MPMX19_03134 0.89 +0.7
423,522 - MPMX19_03134 0.89 -0.4
423,522 - MPMX19_03134 0.89 -2.5
423,522 - MPMX19_03134 0.89 -0.3
423,522 - MPMX19_03134 0.89 -1.3
423,522 - MPMX19_03134 0.89 -1.1
423,522 - MPMX19_03134 0.89 -1.2
423,522 - MPMX19_03134 0.89 -0.2
423,522 - MPMX19_03134 0.89 +0.6
423,522 - MPMX19_03134 0.89 -1.1
423,557 + -1.2
423,557 + -0.5
423,557 + -0.4
423,558 - +0.1
423,569 + -0.5
423,569 + -1.8
423,569 + -2.3
423,570 - -1.4
423,608 + -1.0
423,608 + +0.8
423,609 - -0.7
423,609 - -0.3
423,609 - -0.4
423,609 - -0.6
423,609 - -1.6
423,609 - -0.4
423,609 - -0.8
423,609 - -0.3
423,659 + -0.5
423,659 + +0.7
423,659 + -0.6
423,659 + -0.6
423,659 + +0.1
423,659 + -0.3
423,659 + -0.5
423,659 + -2.2
423,659 + +0.1
423,659 + -0.1
423,659 + -0.9
423,659 + +0.3
423,660 - -0.4
423,660 - -1.3
423,660 - -0.4
423,660 - +0.5
423,660 - +0.2
423,660 - +0.3
423,660 - +0.2
423,660 - +0.5
423,660 - -0.2
423,660 - +0.8
423,660 - -1.1
423,660 - +1.5
423,660 - +1.1
423,753 + +0.1
423,753 + -0.9
423,753 + -0.9
423,954 + MPMX19_03135 0.16 -0.9
423,955 - MPMX19_03135 0.16 -0.6
423,955 - MPMX19_03135 0.16 -0.3
423,955 - MPMX19_03135 0.16 -0.8
423,957 + MPMX19_03135 0.16 -2.3
423,957 + MPMX19_03135 0.16 -1.6
423,957 + MPMX19_03135 0.16 +0.3
423,957 + MPMX19_03135 0.16 -0.9
423,957 + MPMX19_03135 0.16 -1.4
423,957 + MPMX19_03135 0.16 -0.1
423,958 - MPMX19_03135 0.16 -0.9
423,958 - MPMX19_03135 0.16 -0.4
424,038 + MPMX19_03135 0.26 -0.4
424,038 + MPMX19_03135 0.26 -1.2
424,038 + MPMX19_03135 0.26 +0.3
424,039 - MPMX19_03135 0.26 -0.1
424,039 - MPMX19_03135 0.26 -0.1
424,056 + MPMX19_03135 0.28 -1.8
424,057 - MPMX19_03135 0.28 +0.4
424,057 - MPMX19_03135 0.28 -0.8
424,057 - MPMX19_03135 0.28 -0.3
424,057 - MPMX19_03135 0.28 -0.2
424,542 + MPMX19_03135 0.85 -1.9
424,542 + MPMX19_03135 0.85 -0.1
424,542 + MPMX19_03135 0.85 -1.9
424,542 + MPMX19_03135 0.85 +1.6
424,542 + MPMX19_03135 0.85 -0.9
424,542 + MPMX19_03135 0.85 -1.8
424,542 + MPMX19_03135 0.85 +0.1
424,542 + MPMX19_03135 0.85 -0.3
424,543 - MPMX19_03135 0.86 -0.9
424,543 - MPMX19_03135 0.86 +0.9
424,543 - MPMX19_03135 0.86 -0.5
424,543 - MPMX19_03135 0.86 -1.1
424,543 - MPMX19_03135 0.86 -1.3
424,543 - MPMX19_03135 0.86 +1.8
424,593 + -0.4
424,593 + -2.6
424,594 - -1.3
424,594 - -1.4
424,594 - -0.1
424,602 + -0.4
424,602 + -1.3
424,602 + -0.9
424,603 - -0.8
424,603 - -0.1
424,603 - -1.5
424,603 - -2.6
424,804 - -1.4
424,804 - -0.9
424,804 - +0.5
424,806 - +0.8
424,806 - -2.3
424,806 - +0.5
424,806 - -0.8
424,806 - -1.3
424,806 - -0.9
424,806 - -3.5
424,806 - -0.8

Or see this region's nucleotide sequence