Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03109

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03108 and MPMX19_03109 are separated by 58 nucleotidesMPMX19_03109 and MPMX19_03110 overlap by 4 nucleotides MPMX19_03108: MPMX19_03108 - hypothetical protein, at 389,083 to 394,401 _03108 MPMX19_03109: MPMX19_03109 - hypothetical protein, at 394,460 to 394,738 _03109 MPMX19_03110: MPMX19_03110 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 394,735 to 395,970 _03110 Position (kb) 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 393.460 kb on + strand, within MPMX19_03108at 393.460 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.529 kb on + strand, within MPMX19_03108at 393.530 kb on - strand, within MPMX19_03108at 393.530 kb on - strand, within MPMX19_03108at 393.530 kb on - strand, within MPMX19_03108at 393.625 kb on + strand, within MPMX19_03108at 393.625 kb on + strand, within MPMX19_03108at 393.625 kb on + strand, within MPMX19_03108at 393.625 kb on + strand, within MPMX19_03108at 393.625 kb on + strand, within MPMX19_03108at 393.625 kb on + strand, within MPMX19_03108at 393.626 kb on - strand, within MPMX19_03108at 393.626 kb on - strand, within MPMX19_03108at 393.626 kb on - strand, within MPMX19_03108at 393.640 kb on + strand, within MPMX19_03108at 393.640 kb on + strand, within MPMX19_03108at 393.640 kb on + strand, within MPMX19_03108at 393.641 kb on - strand, within MPMX19_03108at 393.641 kb on - strand, within MPMX19_03108at 393.641 kb on - strand, within MPMX19_03108at 393.683 kb on - strand, within MPMX19_03108at 393.683 kb on - strand, within MPMX19_03108at 393.772 kb on + strand, within MPMX19_03108at 393.772 kb on + strand, within MPMX19_03108at 393.772 kb on + strand, within MPMX19_03108at 393.773 kb on - strand, within MPMX19_03108at 393.773 kb on - strand, within MPMX19_03108at 393.773 kb on - strand, within MPMX19_03108at 393.790 kb on + strand, within MPMX19_03108at 393.790 kb on + strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.910 kb on + strandat 393.976 kb on + strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.007 kb on - strandat 394.007 kb on - strandat 394.007 kb on - strandat 394.007 kb on - strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.078 kb on + strandat 394.079 kb on - strandat 394.079 kb on - strandat 394.132 kb on + strandat 394.132 kb on + strandat 394.132 kb on + strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.201 kb on + strandat 394.202 kb on - strandat 394.303 kb on - strandat 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.931 kb on - strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.629 kb on + strand, within MPMX19_03110at 395.630 kb on - strand, within MPMX19_03110

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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393,460 + MPMX19_03108 0.82 +0.3
393,460 + MPMX19_03108 0.82 -0.2
393,529 + MPMX19_03108 0.84 -1.0
393,529 + MPMX19_03108 0.84 +3.1
393,529 + MPMX19_03108 0.84 -0.2
393,529 + MPMX19_03108 0.84 -0.9
393,529 + MPMX19_03108 0.84 -1.7
393,529 + MPMX19_03108 0.84 -1.4
393,529 + MPMX19_03108 0.84 +0.8
393,529 + MPMX19_03108 0.84 -0.7
393,529 + MPMX19_03108 0.84 -0.4
393,529 + MPMX19_03108 0.84 -0.6
393,529 + MPMX19_03108 0.84 -1.2
393,530 - MPMX19_03108 0.84 -0.9
393,530 - MPMX19_03108 0.84 +0.9
393,530 - MPMX19_03108 0.84 -1.3
393,625 + MPMX19_03108 0.85 -0.6
393,625 + MPMX19_03108 0.85 -1.1
393,625 + MPMX19_03108 0.85 +1.5
393,625 + MPMX19_03108 0.85 +0.6
393,625 + MPMX19_03108 0.85 +1.3
393,625 + MPMX19_03108 0.85 -0.5
393,626 - MPMX19_03108 0.85 +0.5
393,626 - MPMX19_03108 0.85 -1.5
393,626 - MPMX19_03108 0.85 -0.7
393,640 + MPMX19_03108 0.86 -0.9
393,640 + MPMX19_03108 0.86 -0.3
393,640 + MPMX19_03108 0.86 -0.2
393,641 - MPMX19_03108 0.86 +0.1
393,641 - MPMX19_03108 0.86 +1.1
393,641 - MPMX19_03108 0.86 -0.4
393,683 - MPMX19_03108 0.86 -1.7
393,683 - MPMX19_03108 0.86 -0.7
393,772 + MPMX19_03108 0.88 -0.5
393,772 + MPMX19_03108 0.88 -1.4
393,772 + MPMX19_03108 0.88 -0.5
393,773 - MPMX19_03108 0.88 -1.7
393,773 - MPMX19_03108 0.88 -1.7
393,773 - MPMX19_03108 0.88 -0.2
393,790 + MPMX19_03108 0.88 -0.6
393,790 + MPMX19_03108 0.88 -0.6
393,791 - MPMX19_03108 0.89 -0.9
393,791 - MPMX19_03108 0.89 -1.4
393,791 - MPMX19_03108 0.89 -0.7
393,791 - MPMX19_03108 0.89 -1.8
393,791 - MPMX19_03108 0.89 -0.1
393,791 - MPMX19_03108 0.89 -0.2
393,791 - MPMX19_03108 0.89 -0.4
393,791 - MPMX19_03108 0.89 +0.5
393,791 - MPMX19_03108 0.89 +0.1
393,791 - MPMX19_03108 0.89 +2.1
393,859 + MPMX19_03108 0.90 -0.5
393,859 + MPMX19_03108 0.90 -0.4
393,859 + MPMX19_03108 0.90 +0.7
393,859 + MPMX19_03108 0.90 +1.5
393,859 + MPMX19_03108 0.90 -1.6
393,859 + MPMX19_03108 0.90 -1.6
393,859 + MPMX19_03108 0.90 +0.1
393,859 + MPMX19_03108 0.90 -0.9
393,859 + MPMX19_03108 0.90 +2.1
393,859 + MPMX19_03108 0.90 -0.7
393,860 - MPMX19_03108 0.90 -0.1
393,860 - MPMX19_03108 0.90 +0.4
393,860 - MPMX19_03108 0.90 -0.2
393,860 - MPMX19_03108 0.90 +0.2
393,860 - MPMX19_03108 0.90 +1.1
393,860 - MPMX19_03108 0.90 -0.7
393,860 - MPMX19_03108 0.90 -0.6
393,910 + +1.2
393,976 + +0.5
393,977 - +0.5
393,977 - +0.1
393,977 - -0.3
393,977 - +0.1
394,006 + -1.7
394,006 + -0.1
394,006 + -0.7
394,006 + -1.2
394,006 + -0.2
394,006 + -1.5
394,006 + -0.6
394,006 + +0.6
394,007 - -2.8
394,007 - +0.3
394,007 - -0.3
394,007 - +0.7
394,063 + +0.1
394,063 + -1.0
394,063 + -0.7
394,063 + +2.7
394,063 + -0.0
394,063 + -0.7
394,064 - -0.7
394,064 - +3.1
394,064 - -1.0
394,064 - -0.8
394,064 - -0.4
394,078 + -0.9
394,079 - +0.1
394,079 - +0.2
394,132 + +0.7
394,132 + -1.0
394,132 + -0.7
394,133 - -1.5
394,133 - +1.1
394,133 - -1.2
394,133 - -0.5
394,133 - -0.2
394,133 - -1.1
394,133 - +0.8
394,133 - -0.1
394,201 + +0.3
394,202 - -1.8
394,303 - -0.9
394,516 + MPMX19_03109 0.20 +1.2
394,516 + MPMX19_03109 0.20 +0.7
394,516 + MPMX19_03109 0.20 +0.0
394,516 + MPMX19_03109 0.20 +0.3
394,516 + MPMX19_03109 0.20 -0.4
394,517 - MPMX19_03109 0.20 +0.3
394,517 - MPMX19_03109 0.20 +0.1
394,517 - MPMX19_03109 0.20 +0.2
394,517 - MPMX19_03109 0.20 -1.4
394,517 - MPMX19_03109 0.20 -0.9
394,931 - MPMX19_03110 0.16 -2.5
394,990 + MPMX19_03110 0.21 +0.2
394,990 + MPMX19_03110 0.21 -0.5
394,990 + MPMX19_03110 0.21 -0.0
394,990 + MPMX19_03110 0.21 -0.2
394,991 - MPMX19_03110 0.21 +0.1
394,991 - MPMX19_03110 0.21 -0.1
394,991 - MPMX19_03110 0.21 -1.3
394,991 - MPMX19_03110 0.21 +0.4
394,991 - MPMX19_03110 0.21 -0.5
395,344 + MPMX19_03110 0.49 +0.7
395,344 + MPMX19_03110 0.49 -1.8
395,344 + MPMX19_03110 0.49 +0.6
395,344 + MPMX19_03110 0.49 +1.1
395,344 + MPMX19_03110 0.49 +0.9
395,344 + MPMX19_03110 0.49 -0.9
395,344 + MPMX19_03110 0.49 -1.6
395,344 + MPMX19_03110 0.49 -1.4
395,344 + MPMX19_03110 0.49 -1.1
395,344 + MPMX19_03110 0.49 +1.1
395,344 + MPMX19_03110 0.49 -0.7
395,345 - MPMX19_03110 0.49 -0.2
395,345 - MPMX19_03110 0.49 -0.8
395,345 - MPMX19_03110 0.49 +0.2
395,345 - MPMX19_03110 0.49 -2.0
395,345 - MPMX19_03110 0.49 -0.5
395,345 - MPMX19_03110 0.49 -1.1
395,345 - MPMX19_03110 0.49 -0.1
395,345 - MPMX19_03110 0.49 +0.3
395,345 - MPMX19_03110 0.49 -1.0
395,629 + MPMX19_03110 0.72 +0.5
395,630 - MPMX19_03110 0.72 -1.1

Or see this region's nucleotide sequence