Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03100

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03099 and MPMX19_03100 are separated by 445 nucleotidesMPMX19_03100 and MPMX19_03101 are separated by 10 nucleotidesMPMX19_03101 and MPMX19_03102 are separated by 38 nucleotides MPMX19_03099: MPMX19_03099 - hypothetical protein, at 369,328 to 370,107 _03099 MPMX19_03100: MPMX19_03100 - hypothetical protein, at 370,553 to 371,212 _03100 MPMX19_03101: MPMX19_03101 - hypothetical protein, at 371,223 to 371,885 _03101 MPMX19_03102: MPMX19_03102 - hypothetical protein, at 371,924 to 372,661 _03102 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 369.617 kb on + strand, within MPMX19_03099at 369.617 kb on + strand, within MPMX19_03099at 369.617 kb on + strand, within MPMX19_03099at 369.618 kb on - strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.695 kb on + strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.855 kb on - strand, within MPMX19_03099at 369.855 kb on - strand, within MPMX19_03099at 369.873 kb on - strand, within MPMX19_03099at 369.873 kb on - strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 370.031 kb on + strandat 370.031 kb on + strandat 370.031 kb on + strandat 370.032 kb on - strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.108 kb on - strandat 370.208 kb on - strandat 370.209 kb on + strandat 370.212 kb on - strandat 370.217 kb on + strandat 370.217 kb on + strandat 370.264 kb on + strandat 370.360 kb on - strandat 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.255 kb on + strandat 371.596 kb on - strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.727 kb on + strand, within MPMX19_03101at 371.727 kb on + strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.179 kb on + strand, within MPMX19_03102at 372.179 kb on + strand, within MPMX19_03102at 372.180 kb on - strand, within MPMX19_03102

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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369,617 + MPMX19_03099 0.37 -0.9
369,617 + MPMX19_03099 0.37 +0.9
369,617 + MPMX19_03099 0.37 -3.3
369,618 - MPMX19_03099 0.37 +0.3
369,626 + MPMX19_03099 0.38 -1.2
369,626 + MPMX19_03099 0.38 -0.7
369,626 + MPMX19_03099 0.38 -1.2
369,626 + MPMX19_03099 0.38 -0.7
369,626 + MPMX19_03099 0.38 -1.8
369,626 + MPMX19_03099 0.38 +0.3
369,626 + MPMX19_03099 0.38 -1.1
369,626 + MPMX19_03099 0.38 +1.1
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 +0.3
369,626 + MPMX19_03099 0.38 -1.2
369,626 + MPMX19_03099 0.38 -2.9
369,626 + MPMX19_03099 0.38 +0.5
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 +0.1
369,626 + MPMX19_03099 0.38 -2.1
369,627 - MPMX19_03099 0.38 +0.4
369,627 - MPMX19_03099 0.38 +1.1
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 -1.4
369,627 - MPMX19_03099 0.38 -0.7
369,627 - MPMX19_03099 0.38 -1.4
369,627 - MPMX19_03099 0.38 -1.2
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 -1.1
369,627 - MPMX19_03099 0.38 +0.3
369,627 - MPMX19_03099 0.38 +1.1
369,627 - MPMX19_03099 0.38 -1.1
369,627 - MPMX19_03099 0.38 -0.7
369,627 - MPMX19_03099 0.38 +1.1
369,627 - MPMX19_03099 0.38 +0.8
369,627 - MPMX19_03099 0.38 -0.8
369,695 + MPMX19_03099 0.47 -0.6
369,696 - MPMX19_03099 0.47 +0.2
369,696 - MPMX19_03099 0.47 +0.3
369,696 - MPMX19_03099 0.47 -0.5
369,854 + MPMX19_03099 0.67 +0.1
369,854 + MPMX19_03099 0.67 -0.1
369,854 + MPMX19_03099 0.67 -1.1
369,855 - MPMX19_03099 0.68 -1.4
369,855 - MPMX19_03099 0.68 -1.7
369,873 - MPMX19_03099 0.70 -0.6
369,873 - MPMX19_03099 0.70 +1.1
369,914 + MPMX19_03099 0.75 +0.8
369,914 + MPMX19_03099 0.75 +1.7
369,914 + MPMX19_03099 0.75 -1.0
369,914 + MPMX19_03099 0.75 +0.5
369,914 + MPMX19_03099 0.75 -0.9
369,915 - MPMX19_03099 0.75 -0.3
369,915 - MPMX19_03099 0.75 -0.6
369,915 - MPMX19_03099 0.75 -0.8
369,915 - MPMX19_03099 0.75 -0.2
369,915 - MPMX19_03099 0.75 +1.1
369,915 - MPMX19_03099 0.75 +1.1
369,915 - MPMX19_03099 0.75 -1.5
369,915 - MPMX19_03099 0.75 +0.3
370,031 + -1.0
370,031 + +0.1
370,031 + +0.5
370,032 - -1.0
370,107 + -0.2
370,107 + -0.4
370,108 - -1.1
370,208 - +0.8
370,209 + -0.3
370,212 - -0.7
370,217 + -1.6
370,217 + -0.8
370,264 + +1.5
370,360 - -0.7
371,087 + MPMX19_03100 0.81 +0.8
371,087 + MPMX19_03100 0.81 -1.8
371,087 + MPMX19_03100 0.81 +0.1
371,087 + MPMX19_03100 0.81 +0.1
371,087 + MPMX19_03100 0.81 -1.3
371,087 + MPMX19_03100 0.81 +2.1
371,087 + MPMX19_03100 0.81 -0.3
371,087 + MPMX19_03100 0.81 -0.5
371,088 - MPMX19_03100 0.81 +0.5
371,088 - MPMX19_03100 0.81 +0.3
371,088 - MPMX19_03100 0.81 +0.4
371,088 - MPMX19_03100 0.81 +0.4
371,088 - MPMX19_03100 0.81 +0.2
371,088 - MPMX19_03100 0.81 +0.0
371,088 - MPMX19_03100 0.81 -1.4
371,088 - MPMX19_03100 0.81 -0.1
371,203 + +0.5
371,203 + -0.5
371,203 + -1.7
371,203 + -0.2
371,203 + -0.7
371,203 + +0.6
371,203 + -0.3
371,203 + -0.1
371,203 + +0.9
371,203 + +0.1
371,203 + -0.9
371,204 - -0.2
371,204 - -0.9
371,204 - -0.6
371,204 - +0.1
371,204 - -0.0
371,204 - +2.7
371,204 - -0.9
371,204 - +1.8
371,235 + -1.5
371,235 + -0.8
371,235 + -0.6
371,235 + +0.1
371,235 + -2.0
371,236 - -0.9
371,236 - +0.2
371,236 - -0.4
371,236 - -0.2
371,236 - -1.8
371,236 - -1.2
371,236 - -0.1
371,236 - +0.5
371,236 - -0.2
371,236 - -0.7
371,236 - -0.6
371,236 - +0.2
371,255 + -0.9
371,596 - MPMX19_03101 0.56 -0.5
371,700 + MPMX19_03101 0.72 -0.1
371,700 + MPMX19_03101 0.72 +1.1
371,700 + MPMX19_03101 0.72 +0.5
371,700 + MPMX19_03101 0.72 -0.8
371,701 - MPMX19_03101 0.72 -0.8
371,701 - MPMX19_03101 0.72 -0.2
371,701 - MPMX19_03101 0.72 -0.5
371,701 - MPMX19_03101 0.72 -1.4
371,727 + MPMX19_03101 0.76 -0.1
371,727 + MPMX19_03101 0.76 +0.8
371,728 - MPMX19_03101 0.76 -0.1
371,728 - MPMX19_03101 0.76 -0.8
371,728 - MPMX19_03101 0.76 -0.7
371,728 - MPMX19_03101 0.76 +0.9
371,728 - MPMX19_03101 0.76 -0.6
372,071 + MPMX19_03102 0.20 +2.1
372,071 + MPMX19_03102 0.20 +0.5
372,071 + MPMX19_03102 0.20 +0.5
372,071 + MPMX19_03102 0.20 -0.4
372,071 + MPMX19_03102 0.20 -0.7
372,071 + MPMX19_03102 0.20 +0.3
372,071 + MPMX19_03102 0.20 +0.1
372,071 + MPMX19_03102 0.20 -0.2
372,071 + MPMX19_03102 0.20 -1.2
372,071 + MPMX19_03102 0.20 -0.1
372,071 + MPMX19_03102 0.20 +0.7
372,071 + MPMX19_03102 0.20 +0.9
372,071 + MPMX19_03102 0.20 -0.5
372,071 + MPMX19_03102 0.20 -0.5
372,071 + MPMX19_03102 0.20 -0.2
372,072 - MPMX19_03102 0.20 -0.1
372,072 - MPMX19_03102 0.20 -2.9
372,072 - MPMX19_03102 0.20 -1.6
372,072 - MPMX19_03102 0.20 +2.1
372,072 - MPMX19_03102 0.20 -0.6
372,072 - MPMX19_03102 0.20 -0.7
372,072 - MPMX19_03102 0.20 +0.1
372,072 - MPMX19_03102 0.20 -1.2
372,072 - MPMX19_03102 0.20 -1.2
372,072 - MPMX19_03102 0.20 -0.5
372,072 - MPMX19_03102 0.20 -0.1
372,072 - MPMX19_03102 0.20 +0.9
372,072 - MPMX19_03102 0.20 -0.6
372,072 - MPMX19_03102 0.20 +0.1
372,072 - MPMX19_03102 0.20 -3.1
372,072 - MPMX19_03102 0.20 -0.5
372,179 + MPMX19_03102 0.35 +0.1
372,179 + MPMX19_03102 0.35 +0.8
372,180 - MPMX19_03102 0.35 -2.2

Or see this region's nucleotide sequence