Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03077

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03076 and MPMX19_03077 are separated by 440 nucleotidesMPMX19_03077 and MPMX19_03078 are separated by 60 nucleotidesMPMX19_03078 and MPMX19_03079 overlap by 4 nucleotides MPMX19_03076: MPMX19_03076 - hypothetical protein, at 342,249 to 343,586 _03076 MPMX19_03077: MPMX19_03077 - N-acetylglucosamine-6-O-sulfatase, at 344,027 to 346,069 _03077 MPMX19_03078: MPMX19_03078 - hypothetical protein, at 346,130 to 346,315 _03078 MPMX19_03079: MPMX19_03079 - hypothetical protein, at 346,312 to 347,457 _03079 Position (kb) 344 345 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 343.045 kb on + strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.046 kb on - strand, within MPMX19_03076at 343.339 kb on + strand, within MPMX19_03076at 343.454 kb on - strandat 343.625 kb on - strandat 343.636 kb on + strandat 343.637 kb on - strandat 343.637 kb on - strandat 343.637 kb on - strandat 343.638 kb on + strandat 343.639 kb on - strandat 343.639 kb on - strandat 343.639 kb on - strandat 343.836 kb on + strandat 343.884 kb on + strandat 343.884 kb on + strandat 343.916 kb on + strandat 344.099 kb on + strandat 344.100 kb on - strandat 344.100 kb on - strandat 344.120 kb on + strandat 344.121 kb on - strandat 344.201 kb on + strandat 344.202 kb on - strandat 344.202 kb on - strandat 344.202 kb on - strandat 344.442 kb on - strand, within MPMX19_03077at 344.453 kb on + strand, within MPMX19_03077at 344.531 kb on + strand, within MPMX19_03077at 344.532 kb on - strand, within MPMX19_03077at 344.532 kb on - strand, within MPMX19_03077at 344.640 kb on - strand, within MPMX19_03077at 344.640 kb on - strand, within MPMX19_03077at 344.640 kb on - strand, within MPMX19_03077at 344.645 kb on + strand, within MPMX19_03077at 344.645 kb on + strand, within MPMX19_03077at 344.645 kb on + strand, within MPMX19_03077at 344.645 kb on + strand, within MPMX19_03077at 344.646 kb on - strand, within MPMX19_03077at 344.646 kb on - strand, within MPMX19_03077at 344.646 kb on - strand, within MPMX19_03077at 344.759 kb on + strand, within MPMX19_03077at 344.759 kb on + strand, within MPMX19_03077at 344.759 kb on + strand, within MPMX19_03077at 344.759 kb on + strand, within MPMX19_03077at 344.759 kb on + strand, within MPMX19_03077at 344.759 kb on + strand, within MPMX19_03077at 344.759 kb on + strand, within MPMX19_03077at 344.760 kb on - strand, within MPMX19_03077at 344.760 kb on - strand, within MPMX19_03077at 344.760 kb on - strand, within MPMX19_03077at 344.760 kb on - strand, within MPMX19_03077at 344.865 kb on - strand, within MPMX19_03077at 344.865 kb on - strand, within MPMX19_03077at 344.993 kb on + strand, within MPMX19_03077at 344.994 kb on - strand, within MPMX19_03077at 344.994 kb on - strand, within MPMX19_03077at 344.994 kb on - strand, within MPMX19_03077at 345.143 kb on + strand, within MPMX19_03077at 345.167 kb on + strand, within MPMX19_03077at 345.167 kb on + strand, within MPMX19_03077at 345.167 kb on + strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.327 kb on - strand, within MPMX19_03077at 345.327 kb on - strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.579 kb on - strand, within MPMX19_03077at 345.579 kb on - strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.675 kb on - strand, within MPMX19_03077at 345.675 kb on - strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.825 kb on - strand, within MPMX19_03077at 345.825 kb on - strand, within MPMX19_03077at 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.868 kb on - strandat 345.965 kb on + strandat 345.966 kb on - strandat 345.966 kb on - strandat 345.966 kb on - strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.048 kb on - strandat 346.048 kb on - strandat 346.048 kb on - strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.472 kb on + strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.625 kb on + strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.965 kb on - strand, within MPMX19_03079

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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343,045 + MPMX19_03076 0.59 +1.0
343,045 + MPMX19_03076 0.59 -0.7
343,045 + MPMX19_03076 0.59 -0.6
343,046 - MPMX19_03076 0.60 +0.7
343,339 + MPMX19_03076 0.81 +0.4
343,454 - -1.5
343,625 - -0.5
343,636 + -1.2
343,637 - +0.4
343,637 - -0.5
343,637 - -0.0
343,638 + +0.1
343,639 - -2.7
343,639 - -1.1
343,639 - -1.4
343,836 + -0.2
343,884 + -0.2
343,884 + +0.5
343,916 + -0.2
344,099 + -0.4
344,100 - -0.7
344,100 - -0.5
344,120 + +0.4
344,121 - -1.4
344,201 + -0.6
344,202 - -0.1
344,202 - -0.2
344,202 - -0.5
344,442 - MPMX19_03077 0.20 +0.2
344,453 + MPMX19_03077 0.21 +0.1
344,531 + MPMX19_03077 0.25 -0.9
344,532 - MPMX19_03077 0.25 -0.5
344,532 - MPMX19_03077 0.25 -0.5
344,640 - MPMX19_03077 0.30 -1.3
344,640 - MPMX19_03077 0.30 +0.5
344,640 - MPMX19_03077 0.30 +1.1
344,645 + MPMX19_03077 0.30 +1.6
344,645 + MPMX19_03077 0.30 +2.7
344,645 + MPMX19_03077 0.30 +1.1
344,645 + MPMX19_03077 0.30 -0.2
344,646 - MPMX19_03077 0.30 -0.5
344,646 - MPMX19_03077 0.30 +2.1
344,646 - MPMX19_03077 0.30 -0.8
344,759 + MPMX19_03077 0.36 -0.1
344,759 + MPMX19_03077 0.36 -1.1
344,759 + MPMX19_03077 0.36 -0.8
344,759 + MPMX19_03077 0.36 +0.3
344,759 + MPMX19_03077 0.36 +0.1
344,759 + MPMX19_03077 0.36 -0.3
344,759 + MPMX19_03077 0.36 +0.5
344,760 - MPMX19_03077 0.36 -1.6
344,760 - MPMX19_03077 0.36 -0.4
344,760 - MPMX19_03077 0.36 +0.1
344,760 - MPMX19_03077 0.36 -0.8
344,865 - MPMX19_03077 0.41 +0.1
344,865 - MPMX19_03077 0.41 +1.1
344,993 + MPMX19_03077 0.47 +0.1
344,994 - MPMX19_03077 0.47 +0.2
344,994 - MPMX19_03077 0.47 -1.7
344,994 - MPMX19_03077 0.47 -2.8
345,143 + MPMX19_03077 0.55 -0.7
345,167 + MPMX19_03077 0.56 -0.5
345,167 + MPMX19_03077 0.56 -1.5
345,167 + MPMX19_03077 0.56 -0.9
345,168 - MPMX19_03077 0.56 -0.1
345,168 - MPMX19_03077 0.56 +1.1
345,168 - MPMX19_03077 0.56 -0.5
345,168 - MPMX19_03077 0.56 +0.1
345,168 - MPMX19_03077 0.56 -1.4
345,168 - MPMX19_03077 0.56 +0.7
345,326 + MPMX19_03077 0.64 +1.5
345,326 + MPMX19_03077 0.64 +0.3
345,326 + MPMX19_03077 0.64 -1.5
345,327 - MPMX19_03077 0.64 -0.7
345,327 - MPMX19_03077 0.64 +1.2
345,578 + MPMX19_03077 0.76 -0.6
345,578 + MPMX19_03077 0.76 +0.4
345,578 + MPMX19_03077 0.76 -0.5
345,578 + MPMX19_03077 0.76 +0.9
345,578 + MPMX19_03077 0.76 -1.1
345,578 + MPMX19_03077 0.76 -0.5
345,579 - MPMX19_03077 0.76 -0.3
345,579 - MPMX19_03077 0.76 -0.3
345,671 + MPMX19_03077 0.80 +1.0
345,671 + MPMX19_03077 0.80 +0.6
345,671 + MPMX19_03077 0.80 -0.7
345,671 + MPMX19_03077 0.80 -1.8
345,671 + MPMX19_03077 0.80 -0.8
345,671 + MPMX19_03077 0.80 -0.4
345,671 + MPMX19_03077 0.80 -0.7
345,672 - MPMX19_03077 0.81 -0.0
345,672 - MPMX19_03077 0.81 -0.5
345,672 - MPMX19_03077 0.81 -0.8
345,672 - MPMX19_03077 0.81 -1.3
345,672 - MPMX19_03077 0.81 -1.2
345,674 + MPMX19_03077 0.81 -0.1
345,674 + MPMX19_03077 0.81 +1.4
345,674 + MPMX19_03077 0.81 -0.2
345,674 + MPMX19_03077 0.81 -1.5
345,675 - MPMX19_03077 0.81 -0.5
345,675 - MPMX19_03077 0.81 -0.5
345,683 + MPMX19_03077 0.81 -0.2
345,683 + MPMX19_03077 0.81 +0.4
345,683 + MPMX19_03077 0.81 -0.7
345,683 + MPMX19_03077 0.81 -1.6
345,692 + MPMX19_03077 0.81 +0.0
345,692 + MPMX19_03077 0.81 +1.1
345,692 + MPMX19_03077 0.81 +0.5
345,692 + MPMX19_03077 0.81 +0.3
345,692 + MPMX19_03077 0.81 +0.3
345,692 + MPMX19_03077 0.81 -1.4
345,693 - MPMX19_03077 0.82 -0.4
345,693 - MPMX19_03077 0.82 -1.6
345,693 - MPMX19_03077 0.82 -0.1
345,693 - MPMX19_03077 0.82 -0.9
345,693 - MPMX19_03077 0.82 -0.4
345,693 - MPMX19_03077 0.82 +0.1
345,693 - MPMX19_03077 0.82 -0.5
345,693 - MPMX19_03077 0.82 +0.7
345,693 - MPMX19_03077 0.82 -1.4
345,825 - MPMX19_03077 0.88 +0.1
345,825 - MPMX19_03077 0.88 -0.1
345,866 + -1.0
345,866 + -1.1
345,866 + -0.3
345,866 + -1.8
345,866 + +0.1
345,866 + -0.6
345,866 + -0.9
345,866 + -1.0
345,866 + -1.5
345,867 - +0.1
345,867 - +2.1
345,867 - -1.1
345,867 - +1.1
345,867 - -0.5
345,868 - -1.2
345,965 + -0.8
345,966 - -1.1
345,966 - +0.2
345,966 - -0.4
346,047 + -0.2
346,047 + -0.9
346,047 + -0.5
346,047 + -1.1
346,048 - +0.1
346,048 - -0.9
346,048 - -0.7
346,397 + -2.9
346,397 + -0.3
346,397 + +0.3
346,397 + -0.5
346,398 - -0.8
346,398 - -0.5
346,398 - -0.1
346,398 - -0.9
346,472 + MPMX19_03079 0.14 -0.1
346,473 - MPMX19_03079 0.14 -0.6
346,473 - MPMX19_03079 0.14 -0.5
346,473 - MPMX19_03079 0.14 +0.2
346,517 + MPMX19_03079 0.18 +0.8
346,517 + MPMX19_03079 0.18 -1.6
346,517 + MPMX19_03079 0.18 +0.1
346,517 + MPMX19_03079 0.18 -0.8
346,517 + MPMX19_03079 0.18 +0.3
346,517 + MPMX19_03079 0.18 +0.3
346,517 + MPMX19_03079 0.18 -0.6
346,517 + MPMX19_03079 0.18 +0.8
346,517 + MPMX19_03079 0.18 -1.5
346,517 + MPMX19_03079 0.18 -0.5
346,518 - MPMX19_03079 0.18 -0.1
346,518 - MPMX19_03079 0.18 +0.3
346,518 - MPMX19_03079 0.18 -1.7
346,518 - MPMX19_03079 0.18 -0.2
346,518 - MPMX19_03079 0.18 -1.1
346,518 - MPMX19_03079 0.18 -0.1
346,518 - MPMX19_03079 0.18 +0.3
346,518 - MPMX19_03079 0.18 -0.9
346,625 + MPMX19_03079 0.27 -0.1
346,797 - MPMX19_03079 0.42 +0.3
346,797 - MPMX19_03079 0.42 -0.1
346,965 - MPMX19_03079 0.57 -0.1

Or see this region's nucleotide sequence