Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03076 and MPMX19_03077 are separated by 440 nucleotides MPMX19_03077 and MPMX19_03078 are separated by 60 nucleotides MPMX19_03078 and MPMX19_03079 overlap by 4 nucleotides
MPMX19_03076: MPMX19_03076 - hypothetical protein, at 342,249 to 343,586
_03076
MPMX19_03077: MPMX19_03077 - N-acetylglucosamine-6-O-sulfatase, at 344,027 to 346,069
_03077
MPMX19_03078: MPMX19_03078 - hypothetical protein, at 346,130 to 346,315
_03078
MPMX19_03079: MPMX19_03079 - hypothetical protein, at 346,312 to 347,457
_03079
Position (kb)
344
345
346
347 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 343.045 kb on + strand, within MPMX19_03076 at 343.045 kb on + strand, within MPMX19_03076 at 343.045 kb on + strand, within MPMX19_03076 at 343.046 kb on - strand, within MPMX19_03076 at 343.339 kb on + strand, within MPMX19_03076 at 343.454 kb on - strand at 343.625 kb on - strand at 343.636 kb on + strand at 343.637 kb on - strand at 343.637 kb on - strand at 343.637 kb on - strand at 343.638 kb on + strand at 343.639 kb on - strand at 343.639 kb on - strand at 343.639 kb on - strand at 343.836 kb on + strand at 343.884 kb on + strand at 343.884 kb on + strand at 343.916 kb on + strand at 344.099 kb on + strand at 344.100 kb on - strand at 344.100 kb on - strand at 344.120 kb on + strand at 344.121 kb on - strand at 344.201 kb on + strand at 344.202 kb on - strand at 344.202 kb on - strand at 344.202 kb on - strand at 344.442 kb on - strand, within MPMX19_03077 at 344.453 kb on + strand, within MPMX19_03077 at 344.531 kb on + strand, within MPMX19_03077 at 344.532 kb on - strand, within MPMX19_03077 at 344.532 kb on - strand, within MPMX19_03077 at 344.640 kb on - strand, within MPMX19_03077 at 344.640 kb on - strand, within MPMX19_03077 at 344.640 kb on - strand, within MPMX19_03077 at 344.645 kb on + strand, within MPMX19_03077 at 344.645 kb on + strand, within MPMX19_03077 at 344.645 kb on + strand, within MPMX19_03077 at 344.645 kb on + strand, within MPMX19_03077 at 344.646 kb on - strand, within MPMX19_03077 at 344.646 kb on - strand, within MPMX19_03077 at 344.646 kb on - strand, within MPMX19_03077 at 344.759 kb on + strand, within MPMX19_03077 at 344.759 kb on + strand, within MPMX19_03077 at 344.759 kb on + strand, within MPMX19_03077 at 344.759 kb on + strand, within MPMX19_03077 at 344.759 kb on + strand, within MPMX19_03077 at 344.759 kb on + strand, within MPMX19_03077 at 344.759 kb on + strand, within MPMX19_03077 at 344.760 kb on - strand, within MPMX19_03077 at 344.760 kb on - strand, within MPMX19_03077 at 344.760 kb on - strand, within MPMX19_03077 at 344.760 kb on - strand, within MPMX19_03077 at 344.865 kb on - strand, within MPMX19_03077 at 344.865 kb on - strand, within MPMX19_03077 at 344.993 kb on + strand, within MPMX19_03077 at 344.994 kb on - strand, within MPMX19_03077 at 344.994 kb on - strand, within MPMX19_03077 at 344.994 kb on - strand, within MPMX19_03077 at 345.143 kb on + strand, within MPMX19_03077 at 345.167 kb on + strand, within MPMX19_03077 at 345.167 kb on + strand, within MPMX19_03077 at 345.167 kb on + strand, within MPMX19_03077 at 345.168 kb on - strand, within MPMX19_03077 at 345.168 kb on - strand, within MPMX19_03077 at 345.168 kb on - strand, within MPMX19_03077 at 345.168 kb on - strand, within MPMX19_03077 at 345.168 kb on - strand, within MPMX19_03077 at 345.168 kb on - strand, within MPMX19_03077 at 345.326 kb on + strand, within MPMX19_03077 at 345.326 kb on + strand, within MPMX19_03077 at 345.326 kb on + strand, within MPMX19_03077 at 345.327 kb on - strand, within MPMX19_03077 at 345.327 kb on - strand, within MPMX19_03077 at 345.578 kb on + strand, within MPMX19_03077 at 345.578 kb on + strand, within MPMX19_03077 at 345.578 kb on + strand, within MPMX19_03077 at 345.578 kb on + strand, within MPMX19_03077 at 345.578 kb on + strand, within MPMX19_03077 at 345.578 kb on + strand, within MPMX19_03077 at 345.579 kb on - strand, within MPMX19_03077 at 345.579 kb on - strand, within MPMX19_03077 at 345.671 kb on + strand, within MPMX19_03077 at 345.671 kb on + strand, within MPMX19_03077 at 345.671 kb on + strand, within MPMX19_03077 at 345.671 kb on + strand, within MPMX19_03077 at 345.671 kb on + strand, within MPMX19_03077 at 345.671 kb on + strand, within MPMX19_03077 at 345.671 kb on + strand, within MPMX19_03077 at 345.672 kb on - strand, within MPMX19_03077 at 345.672 kb on - strand, within MPMX19_03077 at 345.672 kb on - strand, within MPMX19_03077 at 345.672 kb on - strand, within MPMX19_03077 at 345.672 kb on - strand, within MPMX19_03077 at 345.674 kb on + strand, within MPMX19_03077 at 345.674 kb on + strand, within MPMX19_03077 at 345.674 kb on + strand, within MPMX19_03077 at 345.674 kb on + strand, within MPMX19_03077 at 345.675 kb on - strand, within MPMX19_03077 at 345.675 kb on - strand, within MPMX19_03077 at 345.683 kb on + strand, within MPMX19_03077 at 345.683 kb on + strand, within MPMX19_03077 at 345.683 kb on + strand, within MPMX19_03077 at 345.683 kb on + strand, within MPMX19_03077 at 345.692 kb on + strand, within MPMX19_03077 at 345.692 kb on + strand, within MPMX19_03077 at 345.692 kb on + strand, within MPMX19_03077 at 345.692 kb on + strand, within MPMX19_03077 at 345.692 kb on + strand, within MPMX19_03077 at 345.692 kb on + strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.693 kb on - strand, within MPMX19_03077 at 345.825 kb on - strand, within MPMX19_03077 at 345.825 kb on - strand, within MPMX19_03077 at 345.866 kb on + strand at 345.866 kb on + strand at 345.866 kb on + strand at 345.866 kb on + strand at 345.866 kb on + strand at 345.866 kb on + strand at 345.866 kb on + strand at 345.866 kb on + strand at 345.866 kb on + strand at 345.867 kb on - strand at 345.867 kb on - strand at 345.867 kb on - strand at 345.867 kb on - strand at 345.867 kb on - strand at 345.868 kb on - strand at 345.965 kb on + strand at 345.966 kb on - strand at 345.966 kb on - strand at 345.966 kb on - strand at 346.047 kb on + strand at 346.047 kb on + strand at 346.047 kb on + strand at 346.047 kb on + strand at 346.048 kb on - strand at 346.048 kb on - strand at 346.048 kb on - strand at 346.397 kb on + strand at 346.397 kb on + strand at 346.397 kb on + strand at 346.397 kb on + strand at 346.398 kb on - strand at 346.398 kb on - strand at 346.398 kb on - strand at 346.398 kb on - strand at 346.472 kb on + strand, within MPMX19_03079 at 346.473 kb on - strand, within MPMX19_03079 at 346.473 kb on - strand, within MPMX19_03079 at 346.473 kb on - strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.517 kb on + strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.518 kb on - strand, within MPMX19_03079 at 346.625 kb on + strand, within MPMX19_03079 at 346.797 kb on - strand, within MPMX19_03079 at 346.797 kb on - strand, within MPMX19_03079 at 346.965 kb on - strand, within MPMX19_03079
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 343,045 + MPMX19_03076 0.59 +1.0 343,045 + MPMX19_03076 0.59 -0.7 343,045 + MPMX19_03076 0.59 -0.6 343,046 - MPMX19_03076 0.60 +0.7 343,339 + MPMX19_03076 0.81 +0.4 343,454 - -1.5 343,625 - -0.5 343,636 + -1.2 343,637 - +0.4 343,637 - -0.5 343,637 - -0.0 343,638 + +0.1 343,639 - -2.7 343,639 - -1.1 343,639 - -1.4 343,836 + -0.2 343,884 + -0.2 343,884 + +0.5 343,916 + -0.2 344,099 + -0.4 344,100 - -0.7 344,100 - -0.5 344,120 + +0.4 344,121 - -1.4 344,201 + -0.6 344,202 - -0.1 344,202 - -0.2 344,202 - -0.5 344,442 - MPMX19_03077 0.20 +0.2 344,453 + MPMX19_03077 0.21 +0.1 344,531 + MPMX19_03077 0.25 -0.9 344,532 - MPMX19_03077 0.25 -0.5 344,532 - MPMX19_03077 0.25 -0.5 344,640 - MPMX19_03077 0.30 -1.3 344,640 - MPMX19_03077 0.30 +0.5 344,640 - MPMX19_03077 0.30 +1.1 344,645 + MPMX19_03077 0.30 +1.6 344,645 + MPMX19_03077 0.30 +2.7 344,645 + MPMX19_03077 0.30 +1.1 344,645 + MPMX19_03077 0.30 -0.2 344,646 - MPMX19_03077 0.30 -0.5 344,646 - MPMX19_03077 0.30 +2.1 344,646 - MPMX19_03077 0.30 -0.8 344,759 + MPMX19_03077 0.36 -0.1 344,759 + MPMX19_03077 0.36 -1.1 344,759 + MPMX19_03077 0.36 -0.8 344,759 + MPMX19_03077 0.36 +0.3 344,759 + MPMX19_03077 0.36 +0.1 344,759 + MPMX19_03077 0.36 -0.3 344,759 + MPMX19_03077 0.36 +0.5 344,760 - MPMX19_03077 0.36 -1.6 344,760 - MPMX19_03077 0.36 -0.4 344,760 - MPMX19_03077 0.36 +0.1 344,760 - MPMX19_03077 0.36 -0.8 344,865 - MPMX19_03077 0.41 +0.1 344,865 - MPMX19_03077 0.41 +1.1 344,993 + MPMX19_03077 0.47 +0.1 344,994 - MPMX19_03077 0.47 +0.2 344,994 - MPMX19_03077 0.47 -1.7 344,994 - MPMX19_03077 0.47 -2.8 345,143 + MPMX19_03077 0.55 -0.7 345,167 + MPMX19_03077 0.56 -0.5 345,167 + MPMX19_03077 0.56 -1.5 345,167 + MPMX19_03077 0.56 -0.9 345,168 - MPMX19_03077 0.56 -0.1 345,168 - MPMX19_03077 0.56 +1.1 345,168 - MPMX19_03077 0.56 -0.5 345,168 - MPMX19_03077 0.56 +0.1 345,168 - MPMX19_03077 0.56 -1.4 345,168 - MPMX19_03077 0.56 +0.7 345,326 + MPMX19_03077 0.64 +1.5 345,326 + MPMX19_03077 0.64 +0.3 345,326 + MPMX19_03077 0.64 -1.5 345,327 - MPMX19_03077 0.64 -0.7 345,327 - MPMX19_03077 0.64 +1.2 345,578 + MPMX19_03077 0.76 -0.6 345,578 + MPMX19_03077 0.76 +0.4 345,578 + MPMX19_03077 0.76 -0.5 345,578 + MPMX19_03077 0.76 +0.9 345,578 + MPMX19_03077 0.76 -1.1 345,578 + MPMX19_03077 0.76 -0.5 345,579 - MPMX19_03077 0.76 -0.3 345,579 - MPMX19_03077 0.76 -0.3 345,671 + MPMX19_03077 0.80 +1.0 345,671 + MPMX19_03077 0.80 +0.6 345,671 + MPMX19_03077 0.80 -0.7 345,671 + MPMX19_03077 0.80 -1.8 345,671 + MPMX19_03077 0.80 -0.8 345,671 + MPMX19_03077 0.80 -0.4 345,671 + MPMX19_03077 0.80 -0.7 345,672 - MPMX19_03077 0.81 -0.0 345,672 - MPMX19_03077 0.81 -0.5 345,672 - MPMX19_03077 0.81 -0.8 345,672 - MPMX19_03077 0.81 -1.3 345,672 - MPMX19_03077 0.81 -1.2 345,674 + MPMX19_03077 0.81 -0.1 345,674 + MPMX19_03077 0.81 +1.4 345,674 + MPMX19_03077 0.81 -0.2 345,674 + MPMX19_03077 0.81 -1.5 345,675 - MPMX19_03077 0.81 -0.5 345,675 - MPMX19_03077 0.81 -0.5 345,683 + MPMX19_03077 0.81 -0.2 345,683 + MPMX19_03077 0.81 +0.4 345,683 + MPMX19_03077 0.81 -0.7 345,683 + MPMX19_03077 0.81 -1.6 345,692 + MPMX19_03077 0.81 +0.0 345,692 + MPMX19_03077 0.81 +1.1 345,692 + MPMX19_03077 0.81 +0.5 345,692 + MPMX19_03077 0.81 +0.3 345,692 + MPMX19_03077 0.81 +0.3 345,692 + MPMX19_03077 0.81 -1.4 345,693 - MPMX19_03077 0.82 -0.4 345,693 - MPMX19_03077 0.82 -1.6 345,693 - MPMX19_03077 0.82 -0.1 345,693 - MPMX19_03077 0.82 -0.9 345,693 - MPMX19_03077 0.82 -0.4 345,693 - MPMX19_03077 0.82 +0.1 345,693 - MPMX19_03077 0.82 -0.5 345,693 - MPMX19_03077 0.82 +0.7 345,693 - MPMX19_03077 0.82 -1.4 345,825 - MPMX19_03077 0.88 +0.1 345,825 - MPMX19_03077 0.88 -0.1 345,866 + -1.0 345,866 + -1.1 345,866 + -0.3 345,866 + -1.8 345,866 + +0.1 345,866 + -0.6 345,866 + -0.9 345,866 + -1.0 345,866 + -1.5 345,867 - +0.1 345,867 - +2.1 345,867 - -1.1 345,867 - +1.1 345,867 - -0.5 345,868 - -1.2 345,965 + -0.8 345,966 - -1.1 345,966 - +0.2 345,966 - -0.4 346,047 + -0.2 346,047 + -0.9 346,047 + -0.5 346,047 + -1.1 346,048 - +0.1 346,048 - -0.9 346,048 - -0.7 346,397 + -2.9 346,397 + -0.3 346,397 + +0.3 346,397 + -0.5 346,398 - -0.8 346,398 - -0.5 346,398 - -0.1 346,398 - -0.9 346,472 + MPMX19_03079 0.14 -0.1 346,473 - MPMX19_03079 0.14 -0.6 346,473 - MPMX19_03079 0.14 -0.5 346,473 - MPMX19_03079 0.14 +0.2 346,517 + MPMX19_03079 0.18 +0.8 346,517 + MPMX19_03079 0.18 -1.6 346,517 + MPMX19_03079 0.18 +0.1 346,517 + MPMX19_03079 0.18 -0.8 346,517 + MPMX19_03079 0.18 +0.3 346,517 + MPMX19_03079 0.18 +0.3 346,517 + MPMX19_03079 0.18 -0.6 346,517 + MPMX19_03079 0.18 +0.8 346,517 + MPMX19_03079 0.18 -1.5 346,517 + MPMX19_03079 0.18 -0.5 346,518 - MPMX19_03079 0.18 -0.1 346,518 - MPMX19_03079 0.18 +0.3 346,518 - MPMX19_03079 0.18 -1.7 346,518 - MPMX19_03079 0.18 -0.2 346,518 - MPMX19_03079 0.18 -1.1 346,518 - MPMX19_03079 0.18 -0.1 346,518 - MPMX19_03079 0.18 +0.3 346,518 - MPMX19_03079 0.18 -0.9 346,625 + MPMX19_03079 0.27 -0.1 346,797 - MPMX19_03079 0.42 +0.3 346,797 - MPMX19_03079 0.42 -0.1 346,965 - MPMX19_03079 0.57 -0.1
Or see this region's nucleotide sequence