Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03070 and MPMX19_03071 are separated by 114 nucleotides MPMX19_03071 and MPMX19_03072 are separated by 61 nucleotides MPMX19_03072 and MPMX19_03073 are separated by 39 nucleotides
MPMX19_03070: MPMX19_03070 - Inner membrane protein YdcO, at 334,864 to 336,096
_03070
MPMX19_03071: MPMX19_03071 - HTH-type transcriptional regulatory protein GabR, at 336,211 to 337,701
_03071
MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870
_03072
MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584
_03073
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.571 kb on - strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.738 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.804 kb on + strand, within MPMX19_03070 at 335.804 kb on + strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.918 kb on - strand, within MPMX19_03070 at 335.959 kb on + strand, within MPMX19_03070 at 335.959 kb on + strand, within MPMX19_03070 at 336.008 kb on + strand at 336.008 kb on + strand at 336.008 kb on + strand at 336.008 kb on + strand at 336.008 kb on + strand at 336.009 kb on + strand at 336.009 kb on - strand at 336.009 kb on - strand at 336.009 kb on - strand at 336.009 kb on - strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.156 kb on + strand at 336.156 kb on + strand at 336.157 kb on - strand at 336.157 kb on - strand at 336.412 kb on + strand, within MPMX19_03071 at 336.639 kb on + strand, within MPMX19_03071 at 336.760 kb on + strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.895 kb on + strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.898 kb on + strand, within MPMX19_03071 at 336.898 kb on + strand, within MPMX19_03071 at 336.898 kb on + strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.983 kb on + strand, within MPMX19_03071 at 336.983 kb on + strand, within MPMX19_03071 at 337.126 kb on + strand, within MPMX19_03071 at 337.126 kb on + strand, within MPMX19_03071 at 337.126 kb on + strand, within MPMX19_03071 at 337.127 kb on - strand, within MPMX19_03071 at 337.127 kb on - strand, within MPMX19_03071 at 337.127 kb on - strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.250 kb on - strand, within MPMX19_03071 at 337.250 kb on - strand, within MPMX19_03071 at 337.250 kb on - strand, within MPMX19_03071 at 337.274 kb on + strand, within MPMX19_03071 at 337.275 kb on - strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.376 kb on + strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.525 kb on - strand, within MPMX19_03071 at 337.525 kb on - strand, within MPMX19_03071 at 337.582 kb on + strand at 337.582 kb on + strand at 337.583 kb on - strand at 337.630 kb on + strand at 337.630 kb on + strand at 337.630 kb on + strand at 337.631 kb on - strand at 337.631 kb on - strand at 337.700 kb on - strand at 337.714 kb on + strand at 337.715 kb on - strand at 337.715 kb on - strand at 337.715 kb on - strand at 337.771 kb on + strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.777 kb on + strand, within MPMX19_03072 at 337.777 kb on + strand, within MPMX19_03072 at 337.778 kb on - strand, within MPMX19_03072 at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.879 kb on + strand at 337.879 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.929 kb on - strand at 337.929 kb on - strand at 337.972 kb on + strand at 338.027 kb on + strand, within MPMX19_03073 at 338.027 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 335,393 + MPMX19_03070 0.43 -0.6 335,393 + MPMX19_03070 0.43 -1.2 335,393 + MPMX19_03070 0.43 -1.1 335,393 + MPMX19_03070 0.43 +0.5 335,393 + MPMX19_03070 0.43 -1.4 335,393 + MPMX19_03070 0.43 -0.5 335,393 + MPMX19_03070 0.43 +0.1 335,393 + MPMX19_03070 0.43 +0.2 335,394 - MPMX19_03070 0.43 -0.4 335,394 - MPMX19_03070 0.43 -2.8 335,394 - MPMX19_03070 0.43 -1.6 335,394 - MPMX19_03070 0.43 -0.9 335,394 - MPMX19_03070 0.43 -0.7 335,571 - MPMX19_03070 0.57 -1.1 335,600 + MPMX19_03070 0.60 -0.9 335,600 + MPMX19_03070 0.60 -1.9 335,600 + MPMX19_03070 0.60 -0.9 335,600 + MPMX19_03070 0.60 +0.2 335,600 + MPMX19_03070 0.60 -1.1 335,600 + MPMX19_03070 0.60 -0.7 335,601 - MPMX19_03070 0.60 -0.2 335,601 - MPMX19_03070 0.60 -0.7 335,601 - MPMX19_03070 0.60 -1.1 335,601 - MPMX19_03070 0.60 -0.6 335,601 - MPMX19_03070 0.60 -0.2 335,601 - MPMX19_03070 0.60 -0.2 335,738 + MPMX19_03070 0.71 -1.1 335,783 + MPMX19_03070 0.75 +1.7 335,783 + MPMX19_03070 0.75 -0.0 335,783 + MPMX19_03070 0.75 +0.7 335,783 + MPMX19_03070 0.75 -0.4 335,783 + MPMX19_03070 0.75 -1.3 335,783 + MPMX19_03070 0.75 -0.7 335,783 + MPMX19_03070 0.75 +1.1 335,784 - MPMX19_03070 0.75 -0.1 335,784 - MPMX19_03070 0.75 -0.1 335,784 - MPMX19_03070 0.75 -0.7 335,784 - MPMX19_03070 0.75 -1.4 335,784 - MPMX19_03070 0.75 -0.5 335,784 - MPMX19_03070 0.75 -0.2 335,784 - MPMX19_03070 0.75 -0.1 335,784 - MPMX19_03070 0.75 +0.5 335,804 + MPMX19_03070 0.76 -0.5 335,804 + MPMX19_03070 0.76 -0.7 335,805 - MPMX19_03070 0.76 -0.2 335,805 - MPMX19_03070 0.76 -1.2 335,805 - MPMX19_03070 0.76 +0.1 335,805 - MPMX19_03070 0.76 -1.4 335,918 - MPMX19_03070 0.85 +2.1 335,959 + MPMX19_03070 0.89 -0.7 335,959 + MPMX19_03070 0.89 -0.5 336,008 + -1.6 336,008 + +0.2 336,008 + +0.5 336,008 + -0.5 336,008 + -1.5 336,009 + -0.3 336,009 - -0.1 336,009 - -0.2 336,009 - -1.2 336,009 - -0.8 336,088 + +0.0 336,088 + -0.2 336,088 + -0.9 336,088 + -1.9 336,088 + -0.1 336,088 + +2.1 336,088 + -1.2 336,088 + -1.2 336,088 + -1.5 336,088 + +0.3 336,088 + -0.5 336,088 + -1.1 336,088 + -1.4 336,088 + -0.5 336,088 + -0.4 336,088 + -1.4 336,088 + -0.7 336,088 + -0.9 336,088 + -2.0 336,088 + -1.7 336,088 + -0.1 336,089 - -1.1 336,089 - +2.1 336,089 - +0.1 336,089 - -0.5 336,089 - -1.1 336,089 - -1.0 336,089 - -0.1 336,089 - +0.1 336,089 - -0.5 336,089 - -0.5 336,089 - -0.2 336,089 - -1.2 336,089 - +1.1 336,089 - +0.3 336,089 - +1.1 336,089 - +0.5 336,089 - -1.4 336,089 - -0.1 336,089 - -2.3 336,156 + -2.9 336,156 + -0.7 336,157 - -0.9 336,157 - +0.2 336,412 + MPMX19_03071 0.13 -0.4 336,639 + MPMX19_03071 0.29 -0.7 336,760 + MPMX19_03071 0.37 -1.2 336,761 - MPMX19_03071 0.37 -0.7 336,761 - MPMX19_03071 0.37 +0.1 336,761 - MPMX19_03071 0.37 -0.0 336,761 - MPMX19_03071 0.37 -0.2 336,895 + MPMX19_03071 0.46 -1.0 336,896 - MPMX19_03071 0.46 +1.8 336,896 - MPMX19_03071 0.46 -0.5 336,896 - MPMX19_03071 0.46 +0.8 336,896 - MPMX19_03071 0.46 +0.6 336,898 + MPMX19_03071 0.46 -0.2 336,898 + MPMX19_03071 0.46 +0.7 336,898 + MPMX19_03071 0.46 +1.1 336,899 - MPMX19_03071 0.46 -0.5 336,899 - MPMX19_03071 0.46 +0.1 336,899 - MPMX19_03071 0.46 -1.7 336,899 - MPMX19_03071 0.46 +0.2 336,983 + MPMX19_03071 0.52 +0.2 336,983 + MPMX19_03071 0.52 -0.2 337,126 + MPMX19_03071 0.61 -2.0 337,126 + MPMX19_03071 0.61 -0.1 337,126 + MPMX19_03071 0.61 -1.1 337,127 - MPMX19_03071 0.61 -0.9 337,127 - MPMX19_03071 0.61 +0.1 337,127 - MPMX19_03071 0.61 -0.2 337,201 + MPMX19_03071 0.66 -0.4 337,201 + MPMX19_03071 0.66 +1.1 337,201 + MPMX19_03071 0.66 -1.2 337,201 + MPMX19_03071 0.66 +0.8 337,201 + MPMX19_03071 0.66 -0.5 337,201 + MPMX19_03071 0.66 -0.2 337,202 - MPMX19_03071 0.66 -1.6 337,202 - MPMX19_03071 0.66 -0.7 337,202 - MPMX19_03071 0.66 -1.2 337,202 - MPMX19_03071 0.66 -1.7 337,202 - MPMX19_03071 0.66 -0.6 337,202 - MPMX19_03071 0.66 -1.6 337,202 - MPMX19_03071 0.66 -0.7 337,249 + MPMX19_03071 0.70 -1.4 337,249 + MPMX19_03071 0.70 -0.4 337,249 + MPMX19_03071 0.70 -1.1 337,249 + MPMX19_03071 0.70 -0.1 337,250 - MPMX19_03071 0.70 +0.3 337,250 - MPMX19_03071 0.70 +0.8 337,250 - MPMX19_03071 0.70 -0.9 337,274 + MPMX19_03071 0.71 -0.9 337,275 - MPMX19_03071 0.71 -1.5 337,375 + MPMX19_03071 0.78 +0.1 337,375 + MPMX19_03071 0.78 -0.8 337,375 + MPMX19_03071 0.78 +0.5 337,375 + MPMX19_03071 0.78 +0.2 337,376 + MPMX19_03071 0.78 -0.8 337,376 - MPMX19_03071 0.78 +0.3 337,376 - MPMX19_03071 0.78 -0.5 337,376 - MPMX19_03071 0.78 -0.5 337,376 - MPMX19_03071 0.78 -0.5 337,376 - MPMX19_03071 0.78 +1.1 337,376 - MPMX19_03071 0.78 -0.2 337,376 - MPMX19_03071 0.78 +2.3 337,376 - MPMX19_03071 0.78 -1.5 337,376 - MPMX19_03071 0.78 +0.3 337,399 + MPMX19_03071 0.80 -0.5 337,399 + MPMX19_03071 0.80 -1.1 337,399 + MPMX19_03071 0.80 +0.9 337,399 + MPMX19_03071 0.80 -0.2 337,400 - MPMX19_03071 0.80 -1.0 337,400 - MPMX19_03071 0.80 -0.5 337,400 - MPMX19_03071 0.80 -1.0 337,400 - MPMX19_03071 0.80 -0.8 337,400 - MPMX19_03071 0.80 -0.5 337,400 - MPMX19_03071 0.80 +0.1 337,400 - MPMX19_03071 0.80 +0.8 337,400 - MPMX19_03071 0.80 -0.9 337,400 - MPMX19_03071 0.80 +2.1 337,400 - MPMX19_03071 0.80 -0.2 337,525 - MPMX19_03071 0.88 -1.2 337,525 - MPMX19_03071 0.88 +1.1 337,582 + -0.2 337,582 + -0.2 337,583 - +0.1 337,630 + +1.2 337,630 + -0.2 337,630 + +0.1 337,631 - -1.2 337,631 - +0.3 337,700 - -1.3 337,714 + +0.5 337,715 - -0.6 337,715 - -0.2 337,715 - -0.7 337,771 + -1.4 337,772 - -2.4 337,772 - -0.6 337,772 - +1.2 337,777 + MPMX19_03072 0.13 +0.5 337,777 + MPMX19_03072 0.13 -0.7 337,778 - MPMX19_03072 0.14 -0.8 337,868 + -0.4 337,868 + -0.9 337,868 + -0.0 337,868 + -0.3 337,868 + -0.9 337,869 - +1.3 337,869 - -3.0 337,869 - -0.5 337,879 + -1.7 337,879 + -0.1 337,928 + -2.6 337,928 + +0.0 337,928 + -0.1 337,928 + -0.7 337,928 + +0.3 337,929 - -2.0 337,929 - -0.0 337,972 + -2.2 338,027 + MPMX19_03073 0.17 +0.7 338,027 + MPMX19_03073 0.17 -1.9 338,465 + MPMX19_03073 0.82 -0.9 338,465 + MPMX19_03073 0.82 +0.3 338,465 + MPMX19_03073 0.82 +0.9 338,466 - MPMX19_03073 0.82 -0.8 338,466 - MPMX19_03073 0.82 +0.5 338,466 - MPMX19_03073 0.82 -1.0
Or see this region's nucleotide sequence