Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03032 and MPMX19_03033 overlap by 4 nucleotides MPMX19_03033 and MPMX19_03034 are separated by 123 nucleotides
MPMX19_03032: MPMX19_03032 - hypothetical protein, at 299,197 to 301,047
_03032
MPMX19_03033: MPMX19_03033 - hypothetical protein, at 301,044 to 302,054
_03033
MPMX19_03034: MPMX19_03034 - hypothetical protein, at 302,178 to 303,023
_03034
Position (kb)
301
302
303 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 300.160 kb on + strand, within MPMX19_03032 at 300.160 kb on + strand, within MPMX19_03032 at 300.160 kb on + strand, within MPMX19_03032 at 300.160 kb on + strand, within MPMX19_03032 at 300.161 kb on - strand, within MPMX19_03032 at 300.161 kb on - strand, within MPMX19_03032 at 300.310 kb on + strand, within MPMX19_03032 at 300.310 kb on + strand, within MPMX19_03032 at 300.310 kb on + strand, within MPMX19_03032 at 300.310 kb on + strand, within MPMX19_03032 at 300.310 kb on + strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.311 kb on - strand, within MPMX19_03032 at 300.430 kb on + strand, within MPMX19_03032 at 300.431 kb on - strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.454 kb on + strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.455 kb on - strand, within MPMX19_03032 at 300.800 kb on - strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.808 kb on + strand, within MPMX19_03032 at 300.809 kb on - strand, within MPMX19_03032 at 300.809 kb on - strand, within MPMX19_03032 at 300.809 kb on - strand, within MPMX19_03032 at 300.809 kb on - strand, within MPMX19_03032 at 300.809 kb on - strand, within MPMX19_03032 at 300.809 kb on - strand, within MPMX19_03032 at 301.137 kb on + strand at 301.137 kb on + strand at 301.138 kb on - strand at 301.138 kb on - strand at 301.138 kb on - strand at 301.138 kb on - strand at 301.138 kb on - strand at 301.138 kb on - strand at 301.534 kb on + strand, within MPMX19_03033 at 301.534 kb on + strand, within MPMX19_03033 at 301.535 kb on - strand, within MPMX19_03033 at 301.549 kb on + strand, within MPMX19_03033 at 301.549 kb on + strand, within MPMX19_03033 at 301.550 kb on - strand, within MPMX19_03033 at 301.550 kb on - strand, within MPMX19_03033 at 301.550 kb on - strand, within MPMX19_03033 at 301.550 kb on - strand, within MPMX19_03033 at 301.732 kb on + strand, within MPMX19_03033 at 301.732 kb on + strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.733 kb on - strand, within MPMX19_03033 at 301.880 kb on - strand, within MPMX19_03033 at 301.880 kb on - strand, within MPMX19_03033 at 301.880 kb on - strand, within MPMX19_03033 at 301.880 kb on - strand, within MPMX19_03033 at 301.880 kb on - strand, within MPMX19_03033 at 302.045 kb on + strand at 302.049 kb on + strand at 302.050 kb on - strand at 302.050 kb on - strand at 302.070 kb on + strand at 302.070 kb on + strand at 302.071 kb on - strand at 302.071 kb on - strand at 302.071 kb on - strand at 302.071 kb on - strand at 302.071 kb on - strand at 302.071 kb on - strand at 302.077 kb on - strand at 302.124 kb on - strand at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.588 kb on + strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.589 kb on - strand, within MPMX19_03034 at 302.879 kb on + strand, within MPMX19_03034 at 303.033 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 300,160 + MPMX19_03032 0.52 -0.4 300,160 + MPMX19_03032 0.52 -1.9 300,160 + MPMX19_03032 0.52 +0.5 300,160 + MPMX19_03032 0.52 -0.3 300,161 - MPMX19_03032 0.52 -0.4 300,161 - MPMX19_03032 0.52 -1.5 300,310 + MPMX19_03032 0.60 +1.3 300,310 + MPMX19_03032 0.60 -0.9 300,310 + MPMX19_03032 0.60 +0.6 300,310 + MPMX19_03032 0.60 -1.0 300,310 + MPMX19_03032 0.60 +0.5 300,311 - MPMX19_03032 0.60 -1.1 300,311 - MPMX19_03032 0.60 -0.9 300,311 - MPMX19_03032 0.60 -1.3 300,311 - MPMX19_03032 0.60 -0.5 300,311 - MPMX19_03032 0.60 -0.5 300,311 - MPMX19_03032 0.60 -2.6 300,311 - MPMX19_03032 0.60 +1.3 300,311 - MPMX19_03032 0.60 -0.1 300,430 + MPMX19_03032 0.67 +0.3 300,431 - MPMX19_03032 0.67 +0.7 300,454 + MPMX19_03032 0.68 -1.3 300,454 + MPMX19_03032 0.68 +0.1 300,454 + MPMX19_03032 0.68 +0.5 300,454 + MPMX19_03032 0.68 +0.3 300,454 + MPMX19_03032 0.68 +0.7 300,454 + MPMX19_03032 0.68 -1.7 300,454 + MPMX19_03032 0.68 -0.4 300,454 + MPMX19_03032 0.68 +0.1 300,454 + MPMX19_03032 0.68 -0.3 300,454 + MPMX19_03032 0.68 +0.7 300,454 + MPMX19_03032 0.68 -1.1 300,454 + MPMX19_03032 0.68 -0.2 300,454 + MPMX19_03032 0.68 +0.1 300,455 - MPMX19_03032 0.68 -1.4 300,455 - MPMX19_03032 0.68 -1.2 300,455 - MPMX19_03032 0.68 +0.2 300,455 - MPMX19_03032 0.68 +1.8 300,455 - MPMX19_03032 0.68 -1.6 300,455 - MPMX19_03032 0.68 -0.3 300,455 - MPMX19_03032 0.68 +0.6 300,455 - MPMX19_03032 0.68 +1.1 300,455 - MPMX19_03032 0.68 -2.2 300,455 - MPMX19_03032 0.68 -0.3 300,455 - MPMX19_03032 0.68 -0.4 300,800 - MPMX19_03032 0.87 +0.5 300,808 + MPMX19_03032 0.87 +0.8 300,808 + MPMX19_03032 0.87 +0.0 300,808 + MPMX19_03032 0.87 -0.4 300,808 + MPMX19_03032 0.87 -2.3 300,808 + MPMX19_03032 0.87 -0.5 300,808 + MPMX19_03032 0.87 -0.1 300,808 + MPMX19_03032 0.87 -0.8 300,808 + MPMX19_03032 0.87 -1.6 300,809 - MPMX19_03032 0.87 +0.1 300,809 - MPMX19_03032 0.87 +0.6 300,809 - MPMX19_03032 0.87 -0.2 300,809 - MPMX19_03032 0.87 +0.1 300,809 - MPMX19_03032 0.87 -1.2 300,809 - MPMX19_03032 0.87 +0.4 301,137 + -0.5 301,137 + -1.1 301,138 - -1.6 301,138 - -2.5 301,138 - +0.7 301,138 - +0.5 301,138 - -0.5 301,138 - -1.2 301,534 + MPMX19_03033 0.48 -0.1 301,534 + MPMX19_03033 0.48 -1.0 301,535 - MPMX19_03033 0.49 -0.5 301,549 + MPMX19_03033 0.50 -0.2 301,549 + MPMX19_03033 0.50 -1.6 301,550 - MPMX19_03033 0.50 -1.3 301,550 - MPMX19_03033 0.50 -1.7 301,550 - MPMX19_03033 0.50 -1.4 301,550 - MPMX19_03033 0.50 -0.1 301,732 + MPMX19_03033 0.68 +0.1 301,732 + MPMX19_03033 0.68 +0.2 301,733 - MPMX19_03033 0.68 -0.5 301,733 - MPMX19_03033 0.68 -2.3 301,733 - MPMX19_03033 0.68 +0.8 301,733 - MPMX19_03033 0.68 +0.3 301,733 - MPMX19_03033 0.68 -0.6 301,733 - MPMX19_03033 0.68 -1.0 301,733 - MPMX19_03033 0.68 -1.7 301,733 - MPMX19_03033 0.68 -0.9 301,880 - MPMX19_03033 0.83 -0.6 301,880 - MPMX19_03033 0.83 -1.5 301,880 - MPMX19_03033 0.83 -1.1 301,880 - MPMX19_03033 0.83 -0.5 301,880 - MPMX19_03033 0.83 -2.1 302,045 + -0.6 302,049 + -0.4 302,050 - +0.5 302,050 - -0.3 302,070 + -1.2 302,070 + -0.7 302,071 - +0.2 302,071 - -0.3 302,071 - -0.9 302,071 - -1.1 302,071 - -0.3 302,071 - -0.6 302,077 - -0.7 302,124 - +0.1 302,588 + MPMX19_03034 0.48 -0.7 302,588 + MPMX19_03034 0.48 -0.7 302,588 + MPMX19_03034 0.48 -0.3 302,588 + MPMX19_03034 0.48 -0.3 302,588 + MPMX19_03034 0.48 -0.9 302,588 + MPMX19_03034 0.48 -0.7 302,588 + MPMX19_03034 0.48 +0.1 302,588 + MPMX19_03034 0.48 -0.7 302,588 + MPMX19_03034 0.48 -1.1 302,588 + MPMX19_03034 0.48 +0.5 302,588 + MPMX19_03034 0.48 -0.9 302,589 - MPMX19_03034 0.49 -1.6 302,589 - MPMX19_03034 0.49 -1.4 302,589 - MPMX19_03034 0.49 -1.5 302,589 - MPMX19_03034 0.49 -0.2 302,589 - MPMX19_03034 0.49 +1.1 302,589 - MPMX19_03034 0.49 -0.1 302,589 - MPMX19_03034 0.49 +0.4 302,589 - MPMX19_03034 0.49 -1.8 302,589 - MPMX19_03034 0.49 -0.3 302,589 - MPMX19_03034 0.49 -0.5 302,589 - MPMX19_03034 0.49 -0.3 302,589 - MPMX19_03034 0.49 -0.9 302,589 - MPMX19_03034 0.49 -1.7 302,589 - MPMX19_03034 0.49 +1.2 302,589 - MPMX19_03034 0.49 -1.7 302,589 - MPMX19_03034 0.49 -1.2 302,589 - MPMX19_03034 0.49 -1.8 302,589 - MPMX19_03034 0.49 -1.6 302,589 - MPMX19_03034 0.49 +0.7 302,589 - MPMX19_03034 0.49 +0.1 302,589 - MPMX19_03034 0.49 -0.2 302,589 - MPMX19_03034 0.49 -1.1 302,879 + MPMX19_03034 0.83 -0.0 303,033 + +0.3
Or see this region's nucleotide sequence