Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03021 and MPMX19_03022 are separated by 112 nucleotides MPMX19_03022 and MPMX19_03023 are separated by 318 nucleotides
MPMX19_03021: MPMX19_03021 - hypothetical protein, at 285,971 to 287,161
_03021
MPMX19_03022: MPMX19_03022 - hypothetical protein, at 287,274 to 287,684
_03022
MPMX19_03023: MPMX19_03023 - Maltose O-acetyltransferase, at 288,003 to 288,563
_03023
Position (kb) 287
288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 287.174 kb on + strand at 287.174 kb on + strand at 287.174 kb on + strand at 287.174 kb on + strand at 287.175 kb on - strand at 287.175 kb on - strand at 287.196 kb on + strand at 287.245 kb on + strand at 287.245 kb on + strand at 287.246 kb on - strand at 287.275 kb on + strand at 287.276 kb on - strand at 287.293 kb on + strand at 287.293 kb on + strand at 287.326 kb on + strand, within MPMX19_03022 at 287.326 kb on + strand, within MPMX19_03022 at 287.326 kb on + strand, within MPMX19_03022 at 287.327 kb on - strand, within MPMX19_03022 at 287.327 kb on - strand, within MPMX19_03022 at 287.327 kb on - strand, within MPMX19_03022 at 287.362 kb on + strand, within MPMX19_03022 at 287.362 kb on + strand, within MPMX19_03022 at 287.362 kb on + strand, within MPMX19_03022 at 287.376 kb on - strand, within MPMX19_03022 at 287.383 kb on + strand, within MPMX19_03022 at 287.384 kb on - strand, within MPMX19_03022 at 287.384 kb on - strand, within MPMX19_03022 at 287.384 kb on - strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.386 kb on + strand, within MPMX19_03022 at 287.387 kb on - strand, within MPMX19_03022 at 287.387 kb on - strand, within MPMX19_03022 at 287.387 kb on - strand, within MPMX19_03022 at 287.387 kb on - strand, within MPMX19_03022 at 287.387 kb on - strand, within MPMX19_03022 at 287.387 kb on - strand, within MPMX19_03022 at 287.432 kb on + strand, within MPMX19_03022 at 287.439 kb on + strand, within MPMX19_03022 at 287.439 kb on + strand, within MPMX19_03022 at 287.439 kb on + strand, within MPMX19_03022 at 287.439 kb on + strand, within MPMX19_03022 at 287.439 kb on + strand, within MPMX19_03022 at 287.439 kb on + strand, within MPMX19_03022 at 287.439 kb on + strand, within MPMX19_03022 at 287.440 kb on - strand, within MPMX19_03022 at 287.440 kb on - strand, within MPMX19_03022 at 287.440 kb on - strand, within MPMX19_03022 at 287.440 kb on - strand, within MPMX19_03022 at 287.465 kb on - strand, within MPMX19_03022 at 287.525 kb on + strand, within MPMX19_03022 at 287.526 kb on - strand, within MPMX19_03022 at 287.526 kb on - strand, within MPMX19_03022 at 287.526 kb on - strand, within MPMX19_03022 at 287.567 kb on + strand, within MPMX19_03022 at 287.569 kb on + strand, within MPMX19_03022 at 287.569 kb on + strand, within MPMX19_03022 at 287.569 kb on + strand, within MPMX19_03022 at 287.569 kb on + strand, within MPMX19_03022 at 287.569 kb on + strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.570 kb on - strand, within MPMX19_03022 at 287.573 kb on + strand, within MPMX19_03022 at 287.573 kb on + strand, within MPMX19_03022 at 287.574 kb on - strand, within MPMX19_03022 at 287.574 kb on - strand, within MPMX19_03022 at 287.602 kb on + strand, within MPMX19_03022 at 287.602 kb on + strand, within MPMX19_03022 at 287.602 kb on + strand, within MPMX19_03022 at 287.602 kb on + strand, within MPMX19_03022 at 287.602 kb on + strand, within MPMX19_03022 at 287.602 kb on + strand, within MPMX19_03022 at 287.602 kb on + strand, within MPMX19_03022 at 287.603 kb on - strand, within MPMX19_03022 at 287.603 kb on - strand, within MPMX19_03022 at 287.603 kb on - strand, within MPMX19_03022 at 287.603 kb on - strand, within MPMX19_03022 at 287.603 kb on - strand, within MPMX19_03022 at 287.603 kb on - strand, within MPMX19_03022 at 287.717 kb on + strand at 287.717 kb on + strand at 287.748 kb on + strand at 287.749 kb on - strand at 287.771 kb on + strand at 287.771 kb on + strand at 287.771 kb on + strand at 287.771 kb on + strand at 287.771 kb on + strand at 287.771 kb on + strand at 287.771 kb on + strand at 287.771 kb on + strand at 287.772 kb on + strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.772 kb on - strand at 287.831 kb on + strand at 287.832 kb on - strand at 287.835 kb on + strand at 287.835 kb on + strand at 287.945 kb on + strand at 287.946 kb on - strand at 287.946 kb on - strand at 287.946 kb on - strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.120 kb on + strand, within MPMX19_03023 at 288.120 kb on + strand, within MPMX19_03023 at 288.120 kb on + strand, within MPMX19_03023 at 288.121 kb on - strand, within MPMX19_03023 at 288.121 kb on - strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.229 kb on - strand, within MPMX19_03023 at 288.229 kb on - strand, within MPMX19_03023 at 288.234 kb on + strand, within MPMX19_03023 at 288.234 kb on + strand, within MPMX19_03023 at 288.235 kb on - strand, within MPMX19_03023
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 287,174 + +0.5 287,174 + -0.3 287,174 + +0.5 287,174 + +0.4 287,175 - -0.8 287,175 - +0.6 287,196 + -1.0 287,245 + +0.7 287,245 + +0.2 287,246 - -1.6 287,275 + -0.3 287,276 - +1.2 287,293 + -1.1 287,293 + -1.4 287,326 + MPMX19_03022 0.13 -0.1 287,326 + MPMX19_03022 0.13 -1.6 287,326 + MPMX19_03022 0.13 -1.4 287,327 - MPMX19_03022 0.13 +0.4 287,327 - MPMX19_03022 0.13 +0.4 287,327 - MPMX19_03022 0.13 +0.4 287,362 + MPMX19_03022 0.21 -1.2 287,362 + MPMX19_03022 0.21 -1.5 287,362 + MPMX19_03022 0.21 -0.5 287,376 - MPMX19_03022 0.25 +0.5 287,383 + MPMX19_03022 0.27 -0.5 287,384 - MPMX19_03022 0.27 -1.3 287,384 - MPMX19_03022 0.27 -1.0 287,384 - MPMX19_03022 0.27 -0.1 287,386 + MPMX19_03022 0.27 +0.1 287,386 + MPMX19_03022 0.27 -1.3 287,386 + MPMX19_03022 0.27 +0.6 287,386 + MPMX19_03022 0.27 -2.3 287,386 + MPMX19_03022 0.27 -0.9 287,386 + MPMX19_03022 0.27 +0.2 287,386 + MPMX19_03022 0.27 +0.7 287,386 + MPMX19_03022 0.27 +0.9 287,386 + MPMX19_03022 0.27 -0.8 287,386 + MPMX19_03022 0.27 -1.0 287,386 + MPMX19_03022 0.27 -0.3 287,386 + MPMX19_03022 0.27 -0.0 287,386 + MPMX19_03022 0.27 -0.4 287,387 - MPMX19_03022 0.27 -0.9 287,387 - MPMX19_03022 0.27 -0.5 287,387 - MPMX19_03022 0.27 -0.4 287,387 - MPMX19_03022 0.27 +1.6 287,387 - MPMX19_03022 0.27 -2.5 287,387 - MPMX19_03022 0.27 -1.0 287,432 + MPMX19_03022 0.38 -0.2 287,439 + MPMX19_03022 0.40 -0.7 287,439 + MPMX19_03022 0.40 -1.7 287,439 + MPMX19_03022 0.40 +0.5 287,439 + MPMX19_03022 0.40 +0.5 287,439 + MPMX19_03022 0.40 +0.8 287,439 + MPMX19_03022 0.40 +0.5 287,439 + MPMX19_03022 0.40 -0.7 287,440 - MPMX19_03022 0.40 -1.5 287,440 - MPMX19_03022 0.40 -0.6 287,440 - MPMX19_03022 0.40 -1.3 287,440 - MPMX19_03022 0.40 -0.5 287,465 - MPMX19_03022 0.46 -1.5 287,525 + MPMX19_03022 0.61 +0.5 287,526 - MPMX19_03022 0.61 -0.4 287,526 - MPMX19_03022 0.61 -1.2 287,526 - MPMX19_03022 0.61 -0.5 287,567 + MPMX19_03022 0.71 +0.2 287,569 + MPMX19_03022 0.72 +0.5 287,569 + MPMX19_03022 0.72 -1.2 287,569 + MPMX19_03022 0.72 -0.5 287,569 + MPMX19_03022 0.72 +0.5 287,569 + MPMX19_03022 0.72 -0.2 287,570 - MPMX19_03022 0.72 +0.2 287,570 - MPMX19_03022 0.72 -0.5 287,570 - MPMX19_03022 0.72 -0.5 287,570 - MPMX19_03022 0.72 -0.3 287,570 - MPMX19_03022 0.72 -0.8 287,570 - MPMX19_03022 0.72 -1.2 287,570 - MPMX19_03022 0.72 -0.1 287,570 - MPMX19_03022 0.72 -1.0 287,570 - MPMX19_03022 0.72 -0.1 287,570 - MPMX19_03022 0.72 -0.1 287,570 - MPMX19_03022 0.72 +0.6 287,573 + MPMX19_03022 0.73 -0.9 287,573 + MPMX19_03022 0.73 +2.1 287,574 - MPMX19_03022 0.73 -0.2 287,574 - MPMX19_03022 0.73 -0.8 287,602 + MPMX19_03022 0.80 +1.1 287,602 + MPMX19_03022 0.80 +0.1 287,602 + MPMX19_03022 0.80 +0.7 287,602 + MPMX19_03022 0.80 -0.1 287,602 + MPMX19_03022 0.80 -0.4 287,602 + MPMX19_03022 0.80 +0.2 287,602 + MPMX19_03022 0.80 +0.2 287,603 - MPMX19_03022 0.80 -1.5 287,603 - MPMX19_03022 0.80 -1.0 287,603 - MPMX19_03022 0.80 -0.3 287,603 - MPMX19_03022 0.80 -0.2 287,603 - MPMX19_03022 0.80 +1.2 287,603 - MPMX19_03022 0.80 +0.8 287,717 + +2.8 287,717 + -0.8 287,748 + -0.5 287,749 - +0.5 287,771 + -0.8 287,771 + +1.1 287,771 + +0.4 287,771 + +0.3 287,771 + -0.3 287,771 + -0.2 287,771 + -0.9 287,771 + -0.5 287,772 + -0.0 287,772 - -0.3 287,772 - +0.5 287,772 - -0.9 287,772 - -1.0 287,772 - -1.8 287,772 - +0.1 287,772 - -1.4 287,772 - -2.3 287,772 - -1.1 287,772 - -0.3 287,831 + +0.6 287,832 - -1.5 287,835 + -1.4 287,835 + -1.8 287,945 + -0.4 287,946 - -0.6 287,946 - -0.7 287,946 - +0.2 288,057 + +0.6 288,057 + -2.0 288,057 + -1.7 288,057 + +0.5 288,057 + -2.0 288,058 - +0.2 288,058 - -0.8 288,058 - -1.0 288,058 - -0.8 288,058 - +0.5 288,058 - -1.4 288,120 + MPMX19_03023 0.21 -0.1 288,120 + MPMX19_03023 0.21 -0.5 288,120 + MPMX19_03023 0.21 -2.3 288,121 - MPMX19_03023 0.21 -1.4 288,121 - MPMX19_03023 0.21 +1.2 288,228 + MPMX19_03023 0.40 -0.6 288,228 + MPMX19_03023 0.40 -1.2 288,228 + MPMX19_03023 0.40 +0.0 288,228 + MPMX19_03023 0.40 -1.3 288,229 - MPMX19_03023 0.40 -0.3 288,229 - MPMX19_03023 0.40 +0.3 288,234 + MPMX19_03023 0.41 -0.1 288,234 + MPMX19_03023 0.41 -0.9 288,235 - MPMX19_03023 0.41 -0.5
Or see this region's nucleotide sequence