Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03019

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03018 and MPMX19_03019 are separated by 82 nucleotidesMPMX19_03019 and MPMX19_03020 are separated by 11 nucleotides MPMX19_03018: MPMX19_03018 - UV DNA damage endonuclease, at 282,312 to 283,388 _03018 MPMX19_03019: MPMX19_03019 - hypothetical protein, at 283,471 to 284,160 _03019 MPMX19_03020: MPMX19_03020 - hypothetical protein, at 284,172 to 285,047 _03020 Position (kb) 283 284 285Strain fitness (log2 ratio) -2 -1 0 1 2at 282.526 kb on + strand, within MPMX19_03018at 282.526 kb on + strand, within MPMX19_03018at 282.526 kb on + strand, within MPMX19_03018at 282.526 kb on + strand, within MPMX19_03018at 282.527 kb on - strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.656 kb on - strand, within MPMX19_03018at 282.656 kb on - strand, within MPMX19_03018at 282.656 kb on - strand, within MPMX19_03018at 282.710 kb on + strand, within MPMX19_03018at 282.802 kb on + strand, within MPMX19_03018at 282.802 kb on + strand, within MPMX19_03018at 282.802 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.920 kb on - strand, within MPMX19_03018at 282.920 kb on - strand, within MPMX19_03018at 282.920 kb on - strand, within MPMX19_03018at 282.980 kb on - strand, within MPMX19_03018at 282.980 kb on - strand, within MPMX19_03018at 282.980 kb on - strand, within MPMX19_03018at 283.081 kb on + strand, within MPMX19_03018at 283.082 kb on - strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.109 kb on - strand, within MPMX19_03018at 283.109 kb on - strand, within MPMX19_03018at 283.151 kb on - strand, within MPMX19_03018at 283.151 kb on - strand, within MPMX19_03018at 283.327 kb on + strandat 283.327 kb on + strandat 283.327 kb on + strandat 283.327 kb on + strandat 283.327 kb on + strandat 283.327 kb on + strandat 283.327 kb on + strandat 283.327 kb on + strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.328 kb on - strandat 283.419 kb on + strandat 283.419 kb on + strandat 283.420 kb on - strandat 283.420 kb on - strandat 283.420 kb on - strandat 283.420 kb on - strandat 283.422 kb on + strandat 283.422 kb on + strandat 283.422 kb on + strandat 283.423 kb on - strandat 283.423 kb on - strandat 283.423 kb on - strandat 283.472 kb on + strandat 283.472 kb on + strandat 283.567 kb on + strand, within MPMX19_03019at 283.567 kb on + strand, within MPMX19_03019at 283.568 kb on - strand, within MPMX19_03019at 283.568 kb on - strand, within MPMX19_03019at 283.568 kb on - strand, within MPMX19_03019at 283.568 kb on - strand, within MPMX19_03019at 283.568 kb on - strand, within MPMX19_03019at 283.568 kb on - strand, within MPMX19_03019at 283.719 kb on - strand, within MPMX19_03019

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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282,526 + MPMX19_03018 0.20 +0.0
282,526 + MPMX19_03018 0.20 -1.4
282,526 + MPMX19_03018 0.20 -0.5
282,526 + MPMX19_03018 0.20 -0.2
282,527 - MPMX19_03018 0.20 +1.0
282,655 + MPMX19_03018 0.32 -0.9
282,655 + MPMX19_03018 0.32 +0.0
282,655 + MPMX19_03018 0.32 -0.4
282,655 + MPMX19_03018 0.32 -1.7
282,656 - MPMX19_03018 0.32 -1.4
282,656 - MPMX19_03018 0.32 -2.3
282,656 - MPMX19_03018 0.32 +1.0
282,710 + MPMX19_03018 0.37 +0.3
282,802 + MPMX19_03018 0.45 +0.2
282,802 + MPMX19_03018 0.45 -0.4
282,802 + MPMX19_03018 0.45 +0.2
282,919 + MPMX19_03018 0.56 -0.8
282,919 + MPMX19_03018 0.56 -1.5
282,919 + MPMX19_03018 0.56 -1.8
282,919 + MPMX19_03018 0.56 -0.4
282,920 - MPMX19_03018 0.56 -0.4
282,920 - MPMX19_03018 0.56 -0.5
282,920 - MPMX19_03018 0.56 -1.0
282,980 - MPMX19_03018 0.62 -0.4
282,980 - MPMX19_03018 0.62 -0.6
282,980 - MPMX19_03018 0.62 -0.9
283,081 + MPMX19_03018 0.71 -0.9
283,082 - MPMX19_03018 0.71 -1.1
283,108 + MPMX19_03018 0.74 +0.5
283,108 + MPMX19_03018 0.74 -1.4
283,108 + MPMX19_03018 0.74 -0.9
283,108 + MPMX19_03018 0.74 -1.0
283,109 - MPMX19_03018 0.74 +0.7
283,109 - MPMX19_03018 0.74 +0.3
283,151 - MPMX19_03018 0.78 +0.5
283,151 - MPMX19_03018 0.78 +0.3
283,327 + -0.5
283,327 + -0.9
283,327 + -0.8
283,327 + +0.5
283,327 + -0.7
283,327 + +0.0
283,327 + +2.0
283,327 + -1.0
283,328 - +0.6
283,328 - -0.8
283,328 - -1.2
283,328 - -0.3
283,328 - +0.0
283,328 - -0.7
283,328 - -0.3
283,328 - +1.6
283,328 - -0.1
283,328 - -1.1
283,419 + +0.2
283,419 + +0.0
283,420 - -1.0
283,420 - -0.5
283,420 - +0.4
283,420 - +0.5
283,422 + -0.7
283,422 + -1.0
283,422 + -0.1
283,423 - -0.5
283,423 - -0.0
283,423 - -1.1
283,472 + +1.0
283,472 + -0.8
283,567 + MPMX19_03019 0.14 +1.0
283,567 + MPMX19_03019 0.14 -0.1
283,568 - MPMX19_03019 0.14 -1.4
283,568 - MPMX19_03019 0.14 -1.1
283,568 - MPMX19_03019 0.14 -1.2
283,568 - MPMX19_03019 0.14 -0.8
283,568 - MPMX19_03019 0.14 -0.6
283,568 - MPMX19_03019 0.14 -0.2
283,719 - MPMX19_03019 0.36 +0.0

Or see this region's nucleotide sequence