Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03007

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03006 and MPMX19_03007 overlap by 4 nucleotidesMPMX19_03007 and MPMX19_03008 are separated by 88 nucleotides MPMX19_03006: MPMX19_03006 - Ribose import permease protein RbsC, at 268,679 to 269,668 _03006 MPMX19_03007: MPMX19_03007 - Arabinose import ATP-binding protein AraG, at 269,665 to 271,203 _03007 MPMX19_03008: MPMX19_03008 - hypothetical protein, at 271,292 to 272,239 _03008 Position (kb) 269 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.067 kb on + strand, within MPMX19_03006at 269.067 kb on + strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.200 kb on - strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.592 kb on + strandat 269.592 kb on + strandat 269.592 kb on + strandat 269.593 kb on - strandat 269.593 kb on - strandat 269.879 kb on + strand, within MPMX19_03007at 269.879 kb on + strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.960 kb on + strand, within MPMX19_03007at 269.961 kb on - strand, within MPMX19_03007at 270.176 kb on + strand, within MPMX19_03007at 270.177 kb on - strand, within MPMX19_03007at 270.177 kb on - strand, within MPMX19_03007at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.707 kb on + strand, within MPMX19_03008at 271.708 kb on - strand, within MPMX19_03008at 271.708 kb on - strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.881 kb on + strand, within MPMX19_03008at 271.882 kb on - strand, within MPMX19_03008

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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268,761 + -0.6
268,761 + +0.9
268,761 + -1.1
268,761 + -1.1
268,761 + -0.9
268,761 + -0.7
268,761 + +0.2
268,761 + +0.1
268,762 - -0.2
268,762 - +0.2
268,762 - -1.6
268,762 - +0.5
268,762 - -2.2
268,762 - -0.9
268,762 - -1.6
268,762 - -0.3
268,762 - +2.8
268,762 - -0.9
269,004 + MPMX19_03006 0.33 -0.5
269,004 + MPMX19_03006 0.33 +0.1
269,004 + MPMX19_03006 0.33 +0.9
269,004 + MPMX19_03006 0.33 +1.4
269,004 + MPMX19_03006 0.33 +0.1
269,004 + MPMX19_03006 0.33 +0.7
269,004 + MPMX19_03006 0.33 -1.8
269,005 - MPMX19_03006 0.33 -0.6
269,005 - MPMX19_03006 0.33 -0.7
269,005 - MPMX19_03006 0.33 +1.1
269,061 + MPMX19_03006 0.39 +0.1
269,061 + MPMX19_03006 0.39 -0.5
269,061 + MPMX19_03006 0.39 +1.5
269,062 - MPMX19_03006 0.39 +1.7
269,062 - MPMX19_03006 0.39 +0.6
269,062 - MPMX19_03006 0.39 -0.3
269,062 - MPMX19_03006 0.39 -0.4
269,067 + MPMX19_03006 0.39 -1.5
269,067 + MPMX19_03006 0.39 -1.4
269,068 - MPMX19_03006 0.39 -0.9
269,068 - MPMX19_03006 0.39 +0.1
269,068 - MPMX19_03006 0.39 -0.6
269,178 + MPMX19_03006 0.50 -0.5
269,178 + MPMX19_03006 0.50 -0.3
269,178 + MPMX19_03006 0.50 -0.9
269,178 + MPMX19_03006 0.50 +0.1
269,178 + MPMX19_03006 0.50 -0.9
269,178 + MPMX19_03006 0.50 -0.8
269,178 + MPMX19_03006 0.50 +0.9
269,179 - MPMX19_03006 0.51 -0.5
269,179 - MPMX19_03006 0.51 -0.3
269,179 - MPMX19_03006 0.51 -0.2
269,179 - MPMX19_03006 0.51 -1.6
269,179 - MPMX19_03006 0.51 -2.2
269,179 - MPMX19_03006 0.51 -2.3
269,179 - MPMX19_03006 0.51 -0.3
269,179 - MPMX19_03006 0.51 +0.6
269,179 - MPMX19_03006 0.51 +0.3
269,179 - MPMX19_03006 0.51 -2.9
269,199 + MPMX19_03006 0.53 -0.2
269,199 + MPMX19_03006 0.53 -0.5
269,199 + MPMX19_03006 0.53 -0.2
269,199 + MPMX19_03006 0.53 -0.1
269,199 + MPMX19_03006 0.53 -0.4
269,200 - MPMX19_03006 0.53 +0.1
269,418 + MPMX19_03006 0.75 -1.5
269,418 + MPMX19_03006 0.75 -0.5
269,418 + MPMX19_03006 0.75 +0.3
269,592 + +0.5
269,592 + +1.6
269,592 + +0.5
269,593 - -0.6
269,593 - +0.5
269,879 + MPMX19_03007 0.14 -0.9
269,879 + MPMX19_03007 0.14 -1.0
269,880 - MPMX19_03007 0.14 -0.4
269,880 - MPMX19_03007 0.14 -0.3
269,880 - MPMX19_03007 0.14 -0.4
269,880 - MPMX19_03007 0.14 -1.6
269,960 + MPMX19_03007 0.19 -3.5
269,961 - MPMX19_03007 0.19 -0.3
270,176 + MPMX19_03007 0.33 -0.8
270,177 - MPMX19_03007 0.33 -0.4
270,177 - MPMX19_03007 0.33 -2.0
271,626 + MPMX19_03008 0.35 +1.0
271,626 + MPMX19_03008 0.35 -0.1
271,626 + MPMX19_03008 0.35 -2.4
271,626 + MPMX19_03008 0.35 -0.1
271,626 + MPMX19_03008 0.35 -1.0
271,626 + MPMX19_03008 0.35 -1.3
271,626 + MPMX19_03008 0.35 -0.2
271,627 - MPMX19_03008 0.35 -1.5
271,627 - MPMX19_03008 0.35 -1.0
271,627 - MPMX19_03008 0.35 -0.3
271,627 - MPMX19_03008 0.35 +0.7
271,627 - MPMX19_03008 0.35 +0.8
271,668 + MPMX19_03008 0.40 -0.1
271,668 + MPMX19_03008 0.40 -2.0
271,668 + MPMX19_03008 0.40 -1.2
271,668 + MPMX19_03008 0.40 +0.0
271,668 + MPMX19_03008 0.40 +0.6
271,668 + MPMX19_03008 0.40 +2.5
271,668 + MPMX19_03008 0.40 -0.5
271,668 + MPMX19_03008 0.40 +0.0
271,668 + MPMX19_03008 0.40 -1.2
271,669 - MPMX19_03008 0.40 +0.1
271,669 - MPMX19_03008 0.40 -0.4
271,669 - MPMX19_03008 0.40 -1.4
271,669 - MPMX19_03008 0.40 -0.6
271,669 - MPMX19_03008 0.40 -2.2
271,669 - MPMX19_03008 0.40 -2.2
271,707 + MPMX19_03008 0.44 -0.5
271,708 - MPMX19_03008 0.44 -0.4
271,708 - MPMX19_03008 0.44 +0.0
271,815 + MPMX19_03008 0.55 -2.0
271,815 + MPMX19_03008 0.55 +0.9
271,815 + MPMX19_03008 0.55 +2.0
271,815 + MPMX19_03008 0.55 -1.0
271,816 - MPMX19_03008 0.55 -1.0
271,816 - MPMX19_03008 0.55 -1.1
271,816 - MPMX19_03008 0.55 -1.2
271,816 - MPMX19_03008 0.55 +0.2
271,816 - MPMX19_03008 0.55 -2.0
271,881 + MPMX19_03008 0.62 -0.1
271,882 - MPMX19_03008 0.62 -0.5

Or see this region's nucleotide sequence