Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03004

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03003 and MPMX19_03004 overlap by 4 nucleotidesMPMX19_03004 and MPMX19_03005 are separated by 11 nucleotides MPMX19_03003: MPMX19_03003 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 265,271 to 266,587 _03003 MPMX19_03004: MPMX19_03004 - 2-oxoisovalerate dehydrogenase subunit beta, at 266,584 to 267,579 _03004 MPMX19_03005: MPMX19_03005 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 267,591 to 268,664 _03005 Position (kb) 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1at 266.004 kb on + strand, within MPMX19_03003at 266.004 kb on + strand, within MPMX19_03003at 266.004 kb on + strand, within MPMX19_03003at 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.573 kb on - strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.930 kb on + strand, within MPMX19_03004at 266.930 kb on + strand, within MPMX19_03004at 266.930 kb on + strand, within MPMX19_03004at 266.931 kb on - strand, within MPMX19_03004at 266.948 kb on + strand, within MPMX19_03004at 266.949 kb on - strand, within MPMX19_03004at 267.044 kb on + strand, within MPMX19_03004at 267.045 kb on - strand, within MPMX19_03004at 267.045 kb on - strand, within MPMX19_03004at 267.110 kb on + strand, within MPMX19_03004at 267.110 kb on + strand, within MPMX19_03004at 267.111 kb on - strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.462 kb on - strand, within MPMX19_03004at 267.474 kb on - strand, within MPMX19_03004at 267.557 kb on + strandat 267.558 kb on - strandat 267.658 kb on + strandat 267.889 kb on + strand, within MPMX19_03005at 267.889 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.333 kb on + strand, within MPMX19_03005at 268.576 kb on + strandat 268.576 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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266,004 + MPMX19_03003 0.56 -0.3
266,004 + MPMX19_03003 0.56 +0.7
266,004 + MPMX19_03003 0.56 +0.9
266,572 + -1.4
266,572 + -0.2
266,572 + -1.1
266,572 + -2.8
266,572 + -0.3
266,572 + +1.5
266,572 + +1.1
266,573 - -1.9
266,576 + -0.6
266,576 + +1.5
266,576 + -0.7
266,576 + -0.8
266,576 + -0.9
266,576 + -1.8
266,576 + -0.3
266,576 + +0.1
266,576 + -0.4
266,576 + -1.6
266,576 + -1.0
266,576 + +0.4
266,576 + -0.6
266,576 + -1.3
266,576 + -1.4
266,577 - -1.1
266,577 - -1.9
266,577 - -0.1
266,577 - -0.9
266,577 - +1.5
266,577 - -1.0
266,577 - -1.4
266,577 - -0.0
266,577 - -0.8
266,577 - -2.3
266,930 + MPMX19_03004 0.35 -0.6
266,930 + MPMX19_03004 0.35 +0.1
266,930 + MPMX19_03004 0.35 -2.3
266,931 - MPMX19_03004 0.35 -0.9
266,948 + MPMX19_03004 0.37 -0.4
266,949 - MPMX19_03004 0.37 +0.2
267,044 + MPMX19_03004 0.46 -1.1
267,045 - MPMX19_03004 0.46 +0.6
267,045 - MPMX19_03004 0.46 -0.8
267,110 + MPMX19_03004 0.53 +0.7
267,110 + MPMX19_03004 0.53 -0.5
267,111 - MPMX19_03004 0.53 -1.1
267,167 + MPMX19_03004 0.59 -1.6
267,167 + MPMX19_03004 0.59 +1.5
267,167 + MPMX19_03004 0.59 +1.5
267,167 + MPMX19_03004 0.59 +0.7
267,168 - MPMX19_03004 0.59 -2.4
267,168 - MPMX19_03004 0.59 -1.5
267,168 - MPMX19_03004 0.59 +1.3
267,266 + MPMX19_03004 0.68 +1.5
267,266 + MPMX19_03004 0.68 +1.2
267,266 + MPMX19_03004 0.68 -1.0
267,326 + MPMX19_03004 0.74 -1.1
267,326 + MPMX19_03004 0.74 -1.5
267,326 + MPMX19_03004 0.74 +0.5
267,326 + MPMX19_03004 0.74 -0.6
267,326 + MPMX19_03004 0.74 +1.5
267,326 + MPMX19_03004 0.74 -1.5
267,326 + MPMX19_03004 0.74 -0.7
267,326 + MPMX19_03004 0.74 +0.2
267,326 + MPMX19_03004 0.74 -1.9
267,326 + MPMX19_03004 0.74 -0.6
267,326 + MPMX19_03004 0.74 -1.5
267,326 + MPMX19_03004 0.74 -2.6
267,326 + MPMX19_03004 0.74 -1.1
267,326 + MPMX19_03004 0.74 -1.1
267,326 + MPMX19_03004 0.74 -0.5
267,326 + MPMX19_03004 0.74 -1.3
267,326 + MPMX19_03004 0.74 -0.5
267,326 + MPMX19_03004 0.74 -1.4
267,326 + MPMX19_03004 0.74 +1.4
267,327 - MPMX19_03004 0.75 -0.2
267,327 - MPMX19_03004 0.75 -1.5
267,327 - MPMX19_03004 0.75 -0.1
267,461 + MPMX19_03004 0.88 -0.7
267,461 + MPMX19_03004 0.88 +0.2
267,461 + MPMX19_03004 0.88 -1.0
267,462 - MPMX19_03004 0.88 -1.4
267,474 - MPMX19_03004 0.89 +1.0
267,557 + -1.1
267,558 - +0.7
267,658 + -1.4
267,889 + MPMX19_03005 0.28 -0.9
267,889 + MPMX19_03005 0.28 +0.2
268,147 + MPMX19_03005 0.52 -0.9
268,147 + MPMX19_03005 0.52 -1.9
268,147 + MPMX19_03005 0.52 -0.1
268,147 + MPMX19_03005 0.52 -0.5
268,333 + MPMX19_03005 0.69 -1.5
268,576 + -0.6
268,576 + -0.1

Or see this region's nucleotide sequence