Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02999 and MPMX19_03000 are separated by 14 nucleotides MPMX19_03000 and MPMX19_03001 overlap by 4 nucleotides MPMX19_03001 and MPMX19_03002 are separated by 108 nucleotides MPMX19_03002 and MPMX19_03003 overlap by 8 nucleotides
MPMX19_02999: MPMX19_02999 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 261,795 to 262,547
_02999
MPMX19_03000: MPMX19_03000 - Galactitol 2-dehydrogenase, at 262,562 to 263,308
_03000
MPMX19_03001: MPMX19_03001 - Ribulokinase, at 263,305 to 264,834
_03001
MPMX19_03002: MPMX19_03002 - hypothetical protein, at 264,943 to 265,278
_03002
MPMX19_03003: MPMX19_03003 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 265,271 to 266,587
_03003
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 262.575 kb on + strand at 262.576 kb on - strand at 262.576 kb on - strand at 262.576 kb on - strand at 262.755 kb on + strand, within MPMX19_03000 at 262.755 kb on + strand, within MPMX19_03000 at 262.756 kb on - strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.140 kb on - strand, within MPMX19_03000 at 263.140 kb on - strand, within MPMX19_03000 at 263.375 kb on + strand at 263.376 kb on - strand at 263.387 kb on + strand at 263.387 kb on + strand at 263.387 kb on + strand at 263.388 kb on - strand at 263.388 kb on - strand at 263.388 kb on - strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.408 kb on + strand at 263.408 kb on + strand at 263.409 kb on - strand at 263.409 kb on - strand at 263.409 kb on - strand at 263.783 kb on + strand, within MPMX19_03001 at 263.783 kb on + strand, within MPMX19_03001 at 263.784 kb on - strand, within MPMX19_03001 at 263.784 kb on - strand, within MPMX19_03001 at 263.784 kb on - strand, within MPMX19_03001 at 263.979 kb on - strand, within MPMX19_03001 at 264.287 kb on + strand, within MPMX19_03001 at 264.288 kb on - strand, within MPMX19_03001 at 264.288 kb on - strand, within MPMX19_03001 at 264.363 kb on - strand, within MPMX19_03001 at 264.740 kb on + strand at 264.741 kb on - strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.782 kb on + strand at 264.783 kb on - strand at 264.783 kb on - strand at 264.783 kb on - strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.827 kb on + strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.828 kb on - strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.830 kb on + strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.831 kb on - strand at 264.867 kb on - strand at 264.867 kb on - strand at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.983 kb on + strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 264.984 kb on - strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.082 kb on + strand, within MPMX19_03002 at 265.083 kb on - strand, within MPMX19_03002 at 265.083 kb on - strand, within MPMX19_03002
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 262,575 + -1.5 262,576 - -0.1 262,576 - -1.1 262,576 - +0.8 262,755 + MPMX19_03000 0.26 +0.0 262,755 + MPMX19_03000 0.26 -1.0 262,756 - MPMX19_03000 0.26 +0.1 262,848 + MPMX19_03000 0.38 -0.3 262,848 + MPMX19_03000 0.38 -0.3 262,848 + MPMX19_03000 0.38 -0.5 262,849 - MPMX19_03000 0.38 -1.0 262,849 - MPMX19_03000 0.38 +0.2 262,849 - MPMX19_03000 0.38 -1.0 263,139 + MPMX19_03000 0.77 -0.3 263,139 + MPMX19_03000 0.77 -0.8 263,139 + MPMX19_03000 0.77 -0.8 263,140 - MPMX19_03000 0.77 -1.4 263,140 - MPMX19_03000 0.77 -0.9 263,375 + -1.8 263,376 - -0.4 263,387 + -2.0 263,387 + -0.5 263,387 + -0.3 263,388 - -0.3 263,388 - +1.0 263,388 - -1.2 263,396 + -0.1 263,396 + +0.4 263,396 + -1.7 263,396 + -1.8 263,397 - +1.0 263,397 - +1.4 263,397 - +0.9 263,397 - -0.3 263,408 + -1.3 263,408 + -0.8 263,409 - +1.0 263,409 - -1.7 263,409 - -1.0 263,783 + MPMX19_03001 0.31 -1.5 263,783 + MPMX19_03001 0.31 -0.3 263,784 - MPMX19_03001 0.31 +1.0 263,784 - MPMX19_03001 0.31 +1.2 263,784 - MPMX19_03001 0.31 +0.0 263,979 - MPMX19_03001 0.44 +1.0 264,287 + MPMX19_03001 0.64 +0.1 264,288 - MPMX19_03001 0.64 +1.2 264,288 - MPMX19_03001 0.64 -1.1 264,363 - MPMX19_03001 0.69 -0.2 264,740 + +1.2 264,741 - +0.2 264,782 + -1.8 264,782 + -1.6 264,782 + +0.3 264,782 + -0.6 264,782 + +0.1 264,783 - +0.2 264,783 - -0.1 264,783 - +0.1 264,827 + -0.3 264,827 + -0.3 264,827 + -0.3 264,827 + -0.0 264,827 + -0.3 264,827 + -0.9 264,828 - -1.1 264,828 - -1.4 264,828 - -0.9 264,828 - -1.2 264,828 - +0.3 264,828 - -0.8 264,828 - +0.2 264,828 - +0.6 264,828 - -1.2 264,828 - -0.1 264,828 - +0.1 264,830 + +0.2 264,830 + -0.6 264,830 + +0.9 264,830 + -1.3 264,830 + -1.1 264,830 + -1.5 264,830 + -1.2 264,830 + -2.0 264,830 + +0.5 264,830 + +0.1 264,830 + -1.2 264,830 + +0.0 264,830 + -2.8 264,831 - -0.3 264,831 - -0.3 264,831 - -0.9 264,831 - -1.1 264,831 - +0.6 264,831 - +0.5 264,831 - +0.8 264,831 - -0.2 264,831 - -1.4 264,831 - -1.4 264,867 - +0.8 264,867 - +1.1 264,983 + MPMX19_03002 0.12 -1.9 264,983 + MPMX19_03002 0.12 -0.9 264,983 + MPMX19_03002 0.12 +0.6 264,983 + MPMX19_03002 0.12 -1.6 264,983 + MPMX19_03002 0.12 -0.4 264,983 + MPMX19_03002 0.12 +1.3 264,983 + MPMX19_03002 0.12 +0.9 264,983 + MPMX19_03002 0.12 -1.4 264,983 + MPMX19_03002 0.12 -1.1 264,984 - MPMX19_03002 0.12 -1.1 264,984 - MPMX19_03002 0.12 -1.5 264,984 - MPMX19_03002 0.12 +0.5 264,984 - MPMX19_03002 0.12 -0.5 264,984 - MPMX19_03002 0.12 -0.9 264,984 - MPMX19_03002 0.12 -0.9 264,984 - MPMX19_03002 0.12 -0.3 264,984 - MPMX19_03002 0.12 -2.0 264,984 - MPMX19_03002 0.12 -0.5 264,984 - MPMX19_03002 0.12 -0.9 264,984 - MPMX19_03002 0.12 +1.3 264,984 - MPMX19_03002 0.12 +0.1 264,984 - MPMX19_03002 0.12 -1.1 264,984 - MPMX19_03002 0.12 +0.4 264,984 - MPMX19_03002 0.12 +0.7 264,984 - MPMX19_03002 0.12 +1.5 264,984 - MPMX19_03002 0.12 -0.3 264,984 - MPMX19_03002 0.12 -0.3 265,082 + MPMX19_03002 0.41 +0.7 265,082 + MPMX19_03002 0.41 +0.9 265,082 + MPMX19_03002 0.41 -2.0 265,082 + MPMX19_03002 0.41 -0.9 265,083 - MPMX19_03002 0.42 +2.1 265,083 - MPMX19_03002 0.42 -1.6
Or see this region's nucleotide sequence