Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02998 and MPMX19_02999 are separated by 100 nucleotides MPMX19_02999 and MPMX19_03000 are separated by 14 nucleotides MPMX19_03000 and MPMX19_03001 overlap by 4 nucleotides
MPMX19_02998: MPMX19_02998 - Colistin resistance protein EmrA, at 260,540 to 261,694
_02998
MPMX19_02999: MPMX19_02999 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 261,795 to 262,547
_02999
MPMX19_03000: MPMX19_03000 - Galactitol 2-dehydrogenase, at 262,562 to 263,308
_03000
MPMX19_03001: MPMX19_03001 - Ribulokinase, at 263,305 to 264,834
_03001
Position (kb)
261
262
263 Strain fitness (log2 ratio)
-2
-1
0
1 at 260.835 kb on + strand, within MPMX19_02998 at 260.835 kb on + strand, within MPMX19_02998 at 260.835 kb on + strand, within MPMX19_02998 at 260.836 kb on - strand, within MPMX19_02998 at 260.836 kb on - strand, within MPMX19_02998 at 260.836 kb on - strand, within MPMX19_02998 at 260.836 kb on - strand, within MPMX19_02998 at 260.836 kb on - strand, within MPMX19_02998 at 260.836 kb on - strand, within MPMX19_02998 at 260.901 kb on + strand, within MPMX19_02998 at 260.901 kb on + strand, within MPMX19_02998 at 260.901 kb on + strand, within MPMX19_02998 at 260.901 kb on + strand, within MPMX19_02998 at 260.902 kb on - strand, within MPMX19_02998 at 260.902 kb on - strand, within MPMX19_02998 at 260.902 kb on - strand, within MPMX19_02998 at 260.902 kb on - strand, within MPMX19_02998 at 261.352 kb on - strand, within MPMX19_02998 at 261.352 kb on - strand, within MPMX19_02998 at 261.474 kb on + strand, within MPMX19_02998 at 261.474 kb on + strand, within MPMX19_02998 at 261.474 kb on + strand, within MPMX19_02998 at 261.474 kb on + strand, within MPMX19_02998 at 261.474 kb on + strand, within MPMX19_02998 at 261.475 kb on - strand, within MPMX19_02998 at 261.475 kb on - strand, within MPMX19_02998 at 261.776 kb on + strand at 261.777 kb on - strand at 261.975 kb on - strand, within MPMX19_02999 at 262.084 kb on + strand, within MPMX19_02999 at 262.085 kb on - strand, within MPMX19_02999 at 262.085 kb on - strand, within MPMX19_02999 at 262.085 kb on - strand, within MPMX19_02999 at 262.085 kb on - strand, within MPMX19_02999 at 262.085 kb on - strand, within MPMX19_02999 at 262.575 kb on + strand at 262.576 kb on - strand at 262.576 kb on - strand at 262.576 kb on - strand at 262.755 kb on + strand, within MPMX19_03000 at 262.755 kb on + strand, within MPMX19_03000 at 262.756 kb on - strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.848 kb on + strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 262.849 kb on - strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.139 kb on + strand, within MPMX19_03000 at 263.140 kb on - strand, within MPMX19_03000 at 263.140 kb on - strand, within MPMX19_03000 at 263.375 kb on + strand at 263.376 kb on - strand at 263.387 kb on + strand at 263.387 kb on + strand at 263.387 kb on + strand at 263.388 kb on - strand at 263.388 kb on - strand at 263.388 kb on - strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.396 kb on + strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.397 kb on - strand at 263.408 kb on + strand at 263.408 kb on + strand at 263.409 kb on - strand at 263.409 kb on - strand at 263.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 260,835 + MPMX19_02998 0.26 -1.1 260,835 + MPMX19_02998 0.26 +0.2 260,835 + MPMX19_02998 0.26 +0.5 260,836 - MPMX19_02998 0.26 +0.2 260,836 - MPMX19_02998 0.26 +0.4 260,836 - MPMX19_02998 0.26 -1.3 260,836 - MPMX19_02998 0.26 -1.4 260,836 - MPMX19_02998 0.26 +0.3 260,836 - MPMX19_02998 0.26 -1.7 260,901 + MPMX19_02998 0.31 -0.2 260,901 + MPMX19_02998 0.31 +0.6 260,901 + MPMX19_02998 0.31 -0.4 260,901 + MPMX19_02998 0.31 -1.7 260,902 - MPMX19_02998 0.31 -0.1 260,902 - MPMX19_02998 0.31 -0.1 260,902 - MPMX19_02998 0.31 -0.4 260,902 - MPMX19_02998 0.31 -1.7 261,352 - MPMX19_02998 0.70 -1.7 261,352 - MPMX19_02998 0.70 -0.5 261,474 + MPMX19_02998 0.81 -1.7 261,474 + MPMX19_02998 0.81 -0.9 261,474 + MPMX19_02998 0.81 +0.2 261,474 + MPMX19_02998 0.81 -0.5 261,474 + MPMX19_02998 0.81 -0.6 261,475 - MPMX19_02998 0.81 -0.3 261,475 - MPMX19_02998 0.81 -1.3 261,776 + +0.1 261,777 - +1.3 261,975 - MPMX19_02999 0.24 +0.3 262,084 + MPMX19_02999 0.38 +0.2 262,085 - MPMX19_02999 0.39 -0.4 262,085 - MPMX19_02999 0.39 -0.1 262,085 - MPMX19_02999 0.39 -0.3 262,085 - MPMX19_02999 0.39 -1.6 262,085 - MPMX19_02999 0.39 +0.3 262,575 + -1.5 262,576 - -0.1 262,576 - -1.1 262,576 - +0.8 262,755 + MPMX19_03000 0.26 +0.0 262,755 + MPMX19_03000 0.26 -1.0 262,756 - MPMX19_03000 0.26 +0.1 262,848 + MPMX19_03000 0.38 -0.3 262,848 + MPMX19_03000 0.38 -0.3 262,848 + MPMX19_03000 0.38 -0.5 262,849 - MPMX19_03000 0.38 -1.0 262,849 - MPMX19_03000 0.38 +0.2 262,849 - MPMX19_03000 0.38 -1.0 263,139 + MPMX19_03000 0.77 -0.3 263,139 + MPMX19_03000 0.77 -0.8 263,139 + MPMX19_03000 0.77 -0.8 263,140 - MPMX19_03000 0.77 -1.4 263,140 - MPMX19_03000 0.77 -0.9 263,375 + -1.8 263,376 - -0.4 263,387 + -2.0 263,387 + -0.5 263,387 + -0.3 263,388 - -0.3 263,388 - +1.0 263,388 - -1.2 263,396 + -0.1 263,396 + +0.4 263,396 + -1.7 263,396 + -1.8 263,397 - +1.0 263,397 - +1.4 263,397 - +0.9 263,397 - -0.3 263,408 + -1.3 263,408 + -0.8 263,409 - +1.0 263,409 - -1.7 263,409 - -1.0
Or see this region's nucleotide sequence